Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8163372.1

Orthogroup ID

OG0005289

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 665

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8163372.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 212 bp

tcagtctacaactcgctccctaagaaagggaagccccagggccgcgaagtcaccgtcttggccgccttcctcctctcctctcctcttcaagaattggaagttgtggcattgggaaccggaaccaaatgcgtcggccgctcactcctcagcccccacggcgatatcgtcaacgattcccacgccgaggtcatcgctcgccgcgctttaatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004000 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_deamin

Protein Analysis

70

Amino Acids

7.41

Weight (kDa)

9.03

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01760 AT1G01760 AT1G01760 AT1G01760
fragaria_vesca	FvH4_7g13861
malus_domestica	MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1
prunus_persica	Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1
pyrus_communis	pycom01g07990
rosa_chinensis	RchiOBHm_Chr1g0354081
rosa_laevigata	RLG00000028228
rosa_multiflora	Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003
rosa_roxburghii	Rroxscaffold_4G00301240
rosa_rugosa	Rorug01G0241100
rosa_samantha	Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900
rosa_wichuraiana	Rw1G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	2 cut(s)	45, 201
AciI	CCGC	4 cut(s)	43, 63, 136, 199
AcoI	YGGCCR	2 cut(s)	60, 133
AfiI	CCNNNNNNNGG	2 cut(s)	26, 184
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	36
AoxI	GGCC	3 cut(s)	40, 60, 133
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	4 cut(s)	43, 63, 136, 199
BlsI	GCNGC	4 cut(s)	44, 64, 137, 200
Bme1390I	CCNGG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	115, 121
BmrFI	CCNGG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	36, 37, 154, 183
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 184
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	4 cut(s)	36, 37, 154, 183
BseLI	CCNNNNNNNGG	2 cut(s)	26, 184
BseMII	CTCAG	1 cut(s)	160
BseRI	GAGGAG	4 cut(s)	62, 67, 72, 134
BseX3I	CGGCCG	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	45, 201
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	3 cut(s)	42, 62, 135
BsiEI	CGRYCG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	26, 184
BsnI	GGCC	3 cut(s)	42, 62, 135
BspACI	CCGC	4 cut(s)	43, 63, 136, 199
BspANI	GGCC	3 cut(s)	42, 62, 135
BspCNI	CTCAG	1 cut(s)	159
BspFNI	CGCG	2 cut(s)	45, 201
BspLI	GGNNCC	2 cut(s)	115, 121
BsrBI	CCGCTC	1 cut(s)	138
BssECI	CCNNGG	4 cut(s)	36, 37, 154, 183
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	21, 146
BstDSI	CCRYGG	1 cut(s)	154
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstFNI	CGCG	2 cut(s)	45, 201
BstHHI	GCGC	1 cut(s)	203
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 156, 200
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	2 cut(s)	45, 201
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	42, 62, 135
BtgI	CCRYGG	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	118
CviJI	RGCY	5 cut(s)	34, 42, 62, 135, 150
CviKI_1	RGCY	5 cut(s)	34, 42, 62, 135, 150
DdeI	CTNAG	2 cut(s)	21, 146
EaeI	YGGCCR	2 cut(s)	60, 133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EclXI	CGGCCG	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	43, 63, 136, 199
Fsp4HI	GCNGC	4 cut(s)	43, 63, 136, 199
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	4 cut(s)	43, 63, 136, 199
HaeIII	GGCC	3 cut(s)	42, 62, 135
HapII	CCGG	1 cut(s)	117
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	7, 169
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	7, 169
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 156, 200
HpyF3I	CTNAG	2 cut(s)	21, 146
HspAI	GCGC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	3 cut(s)	23, 50, 130
MaeIII	GTNAC	1 cut(s)	49
MbiI	CCGCTC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	6 cut(s)	80, 83, 88, 93, 155, 178
MseI	TTAA	1 cut(s)	206
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	2 cut(s)	45, 201
MwoI	GCNNNNNNNGC	3 cut(s)	135, 156, 200
NlaIV	GGNNCC	2 cut(s)	115, 121
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	49
PasI	CCCWGGG	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	44, 64, 137, 200
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	115, 121
PspPI	GGNCC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	4 cut(s)	43, 63, 136, 199
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	1 cut(s)	189
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	4 cut(s)	43, 63, 136, 199
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	55
TasI	AATT	1 cut(s)	92
TauI	GCSGC	4 cut(s)	45, 65, 138, 201
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
XagI	CCTNNNNNAGG	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.