Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005289

Physical Location & Seq

Genomic Coordinates Reverse (-)

8987995 .. 8989046

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTTGCTTCCATTTTCAGGTGATGCTTCACAACTAATTGGCTTGGTACAAAGAAAGCCTGGTCGCGGTGATACAACATTATCAGTTAGTTGCTCTGACAAGATAGCCCCCTGGAATGTTGTTGGAGTTAAAGACGTCTTATCAAGAAATCAAGGTATGGTCAATACTCCAGATACTGATTTACAGACTTCTTTATATAATATTTTGTTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004000 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_deamin

Protein Analysis

72

Amino Acids

7.66

Weight (kDa)

5.94

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01760 AT1G01760 AT1G01760 AT1G01760
fragaria_vesca	FvH4_7g13861
malus_domestica	MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1
prunus_persica	Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1
pyrus_communis	pycom01g07990
rosa_chinensis	RchiOBHm_Chr1g0354081
rosa_laevigata	RLG00000028228
rosa_multiflora	Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003
rosa_roxburghii	Rroxscaffold_4G00301240
rosa_rugosa	Rorug01G0241100
rosa_samantha	Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900
rosa_wichuraiana	Rw1G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AccII	CGCG	1 cut(s)	66
AciI	CCGC	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	17, 65
AjnI	CCWGG	2 cut(s)	58, 110
AlwNI	CAGNNNCTG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	32, 80
BciT130I	CCWGG	2 cut(s)	60, 112
BfaI	CTAG	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	60, 112
BmrFI	CCNGG	2 cut(s)	60, 112
BmsI	GCATC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 65
BseBI	CCWGG	2 cut(s)	60, 112
BseDI	CCNNGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	17, 65
Bsh1236I	CGCG	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	17, 65
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	60, 112
BstACI	GRCGYC	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstNI	CCWGG	2 cut(s)	60, 112
BstSCI	CCNGG	2 cut(s)	58, 110
BstUI	CGCG	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	47
CviJI	RGCY	3 cut(s)	42, 58, 107
CviKI_1	RGCY	3 cut(s)	42, 58, 107
CviQI	GTAC	1 cut(s)	47
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	58, 110
FaiI	YATR	3 cut(s)	158, 196, 198
FspBI	CTAG	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	135
HphI	GGTGA	2 cut(s)	32, 80
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	144, 170
HpyCH4IV	ACGT	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	210
LpnPI	CCDG	6 cut(s)	3, 45, 72, 97, 124, 183
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	214
MaeII	ACGT	1 cut(s)	135
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MluCI	AATT	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	103
MseI	TTAA	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	60, 112
MvaI	CCWGG	2 cut(s)	60, 112
MvnI	CGCG	1 cut(s)	66
NdeII	GATC	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	58, 110
PspGI	CCWGG	2 cut(s)	58, 110
PstNI	CAGNNNCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	60, 112
SetI	ASST	3 cut(s)	22, 138, 157
SfaNI	GCATC	1 cut(s)	13
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	58, 110
TaiI	ACGT	1 cut(s)	138
TasI	AATT	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
XspI	CTAG	1 cut(s)	214
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.