Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004632.1

Orthogroup ID

OG0005289

Physical Location & Seq

Genomic Coordinates Forward (+)

66019 .. 69274

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004632.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atgacgtcgcctcgctgcttcgaaacgccgtcgtttcgtccttcttctccagactcagactggggacacaaagtctcagacaaggtgctttcagtctacaactcgctccctaagaaagggaagccccagggccgcgaagtcaccgtcttggccgccttcctcctctcctctcctcttcaagaattggaagttgtggcattgggaaccggaaccaaatgcgtcggccgctcactcctcagcccccacggcgatatcgtcaacgattcccacgccgaggtcatcgctcgccgcgctttaatcaggttcttctatgcacagatacaatgtctttctcaaatttatagtaagcaaagagataacaatggaagcaaacagttgcgaaacgatgatgcgaaaaagtttatttttgaattggaccctgatgatgggcaaggaaaatacacaatgaggaagggttggaaattgcacatgtatatatcgcaactaccttgtgggattgcttcgccaagttcattgatgtctcccccgaaaaatatctcacctagcggagtgggttcattactggaggagcttaatgagtccataaatgaggaggctttgattgagaataatggtgacgcttcacaactaattggcacggttcaaagaaagcctggtcgtggtgatactacattatcagttagctgctctgacaagatagcccgttggaatgttgttggagttcaaggagctttgctttccttctttcttcaacctgtatacctttcttccattactgttggacaatcccctatcaactccgaaaaggttcatgtggctgattgtctgaaacaagctttgcatgatcgtgtcctaccattatcaagtgagctgatcagtccctttcaggtgaaccagccactactctgggaagctccaatgccaccaaaggaatttcaacattctgagaccgctttgatcactataacatgcgggtattcaatatgttggaataagtctggtttgcatgaagtcattcttggaaccataggaagaaagcaaggcgctgcaaaaggagcacgcagtccgtctactgaatcccctatatgcaaaaaacggcttttggagattttcttgtccctaaggaatgaatgccccaccaaaatccatgtcgatgagatgtcgtatcgagaaattaaggaaacggcacatgaatacaatgcaatgtcaaaagttctaaaaagaagacatacctttagtaattggctattgaagcccccagatttggaggcattctctgctatgggagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004000 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_deamin

Protein Analysis

430

Amino Acids

47.6

Weight (kDa)

8.57

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01760 AT1G01760 AT1G01760 AT1G01760
fragaria_vesca	FvH4_7g13861
malus_domestica	MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1
prunus_persica	Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1
pyrus_communis	pycom01g07990
rosa_chinensis	RchiOBHm_Chr1g0354081
rosa_laevigata	RLG00000028228
rosa_multiflora	Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003
rosa_roxburghii	Rroxscaffold_4G00301240
rosa_rugosa	Rorug01G0241100
rosa_samantha	Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900
rosa_wichuraiana	Rw1G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	3 cut(s)	96, 759, 1070
AccII	CGCG	2 cut(s)	135, 291
AciI	CCGC	7 cut(s)	133, 153, 226, 289, 546, 951, 972
AcoI	YGGCCR	2 cut(s)	150, 223
AcsI	RAATTY	2 cut(s)	336, 932
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	5 cut(s)	116, 274, 425, 659, 1264
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	8 cut(s)	179, 410, 644, 725, 752, 938, 981, 1252
AhdI	GACNNNNNGTC	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	126, 652
AjuI	GAANNNNNNNTTGG	2 cut(s)	1002, 1034
AluBI	AGCT	6 cut(s)	571, 684, 731, 836, 871, 914
AluI	AGCT	6 cut(s)	571, 684, 731, 836, 871, 914
Alw21I	GWGCWC	1 cut(s)	1060
Alw26I	GTCTC	3 cut(s)	79, 525, 941
AoxI	GGCC	3 cut(s)	130, 150, 223
ApeKI	GCWGC	3 cut(s)	15, 684, 1046
ApoI	RAATTY	2 cut(s)	336, 932
ArsI	GACNNNNNNTTYG	4 cut(s)	129, 161, 1134, 1166
Asp700I	GAANNNNTTC	2 cut(s)	807, 1014
AspLEI	GCGC	2 cut(s)	293, 1046
AspS9I	GGNCC	2 cut(s)	130, 415
AsuHPI	GGTGA	5 cut(s)	133, 531, 626, 674, 901
AsuII	TTCGAA	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	1121
BbsI	GAAGAC	1 cut(s)	1231
Bbv12I	GWGCWC	1 cut(s)	1060
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	3 cut(s)	2, 671, 1033
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	4 cut(s)	13, 262, 1112, 1200
BciT130I	CCWGG	2 cut(s)	128, 654
BclI	TGATCA	2 cut(s)	873, 957
BcoDI	GTCTC	3 cut(s)	79, 525, 941
BfaI	CTAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	1047
BglI	GCCNNNNNGGC	1 cut(s)	246
BisI	GCNGC	7 cut(s)	16, 133, 153, 226, 289, 685, 1047
BlsI	GCNGC	7 cut(s)	17, 134, 154, 227, 290, 686, 1048
Bme1390I	CCNGG	2 cut(s)	128, 654
Bme18I	GGWCC	1 cut(s)	415
BmeRI	GACNNNNNGTC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	130, 415
BmiI	GGNNCC	4 cut(s)	205, 211, 417, 1024
BmrFI	CCNGG	2 cut(s)	128, 654
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	1231
BplI	GAGNNNNNCTC	2 cut(s)	1259, 1291
BpmI	CTGGAG	2 cut(s)	33, 584
Bpu10I	CCTNAGC	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	941
BsaJI	CCNNGG	4 cut(s)	126, 127, 244, 273
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 274, 425, 659, 1264
Bse1I	ACTGG	2 cut(s)	65, 567
Bse21I	CCTNAGG	1 cut(s)	1121
Bse3DI	GCAATG	1 cut(s)	1209
BseBI	CCWGG	2 cut(s)	128, 654
BseDI	CCNNGG	4 cut(s)	126, 127, 244, 273
BseLI	CCNNNNNNNGG	5 cut(s)	116, 274, 425, 659, 1264
BseMI	GCAATG	1 cut(s)	1209
BseMII	CTCAG	4 cut(s)	69, 90, 250, 936
BseNI	ACTGG	2 cut(s)	65, 567
BseRI	GAGGAG	6 cut(s)	152, 157, 162, 224, 581, 605
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	2, 671, 1033
Bsh1236I	CGCG	2 cut(s)	135, 291
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	132, 152, 225
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	1060
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	3 cut(s)	78, 864, 1102
BslI	CCNNNNNNNGG	5 cut(s)	116, 274, 425, 659, 1264
BsmAI	GTCTC	3 cut(s)	79, 525, 941
BsmFI	GGGAC	3 cut(s)	78, 864, 1102
BsmI	GAATGC	2 cut(s)	1136, 1271
BsnI	GGCC	3 cut(s)	132, 152, 225
Bso31I	GGTCTC	1 cut(s)	941
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	1060
Bsp143I	GATC	3 cut(s)	844, 873, 957
BspACI	CCGC	7 cut(s)	133, 153, 226, 289, 546, 951, 972
BspANI	GGCC	3 cut(s)	132, 152, 225
BspCNI	CTCAG	4 cut(s)	68, 89, 249, 937
BspFNI	CGCG	2 cut(s)	135, 291
BspLI	GGNNCC	4 cut(s)	205, 211, 417, 1024
BspT104I	TTCGAA	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	941
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	1209
BsrI	ACTGG	2 cut(s)	65, 567
BssECI	CCNNGG	4 cut(s)	126, 127, 244, 273
BssMI	GATC	3 cut(s)	844, 873, 957
BssNAI	GTATAC	1 cut(s)	760
BssNI	GRCGYC	1 cut(s)	5
Bst1107I	GTATAC	1 cut(s)	760
Bst2UI	CCWGG	2 cut(s)	128, 654
Bst4CI	ACNGT	4 cut(s)	145, 375, 640, 778
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	1277
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	286, 1060
BstDEI	CTNAG	6 cut(s)	55, 76, 111, 236, 945, 1121
BstDSI	CCRYGG	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstFNI	CGCG	2 cut(s)	135, 291
BstH2I	RGCGCY	1 cut(s)	1047
BstHHI	GCGC	2 cut(s)	293, 1046
BstKTI	GATC	3 cut(s)	847, 876, 960
BstMAI	GTCTC	3 cut(s)	79, 525, 941
BstMBI	GATC	3 cut(s)	844, 873, 957
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	6 cut(s)	225, 246, 290, 1055, 1252, 1277
BstNI	CCWGG	2 cut(s)	128, 654
BstNSI	RCATGY	2 cut(s)	472, 972
BstSCI	CCNGG	2 cut(s)	126, 652
BstUI	CGCG	2 cut(s)	135, 291
BstV1I	GCAGC	3 cut(s)	2, 671, 1033
BstV2I	GAAGAC	1 cut(s)	1231
BstXI	CCANNNNNNTGG	1 cut(s)	906
BstZ17I	GTATAC	1 cut(s)	760
BstZI	CGGCCG	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	1121
BsuRI	GGCC	3 cut(s)	132, 152, 225
BtgI	CCRYGG	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	286, 1060
CfoI	GCGC	2 cut(s)	293, 1046
Cfr13I	GGNCC	2 cut(s)	130, 415
CseI	GACGC	2 cut(s)	208, 626
CviAII	CATG	7 cut(s)	469, 812, 842, 969, 1007, 1148, 1190
DdeI	CTNAG	6 cut(s)	55, 76, 111, 236, 945, 1121
DpnI	GATC	3 cut(s)	846, 875, 959
DpnII	GATC	3 cut(s)	844, 873, 957
DriI	GACNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	2 cut(s)	150, 223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	180
Eam1105I	GACNNNNNGTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	180
EclXI	CGGCCG	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	941
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	415
Eco52I	CGGCCG	1 cut(s)	223
Eco81I	CCTNAGG	1 cut(s)	1121
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	126, 652
EcoRV	GATATC	1 cut(s)	253
FaeI	CATG	7 cut(s)	472, 815, 845, 972, 1010, 1151, 1193
FalI	AAGNNNNNCTT	2 cut(s)	1002, 1034
FaqI	GGGAC	3 cut(s)	78, 864, 1102
FatI	CATG	7 cut(s)	468, 811, 841, 968, 1006, 1147, 1189
FauI	CCCGC	1 cut(s)	965
FbaI	TGATCA	2 cut(s)	873, 957
FblI	GTMKAC	3 cut(s)	96, 759, 1070
Fnu4HI	GCNGC	7 cut(s)	16, 133, 153, 226, 289, 685, 1047
Fsp4HI	GCNGC	7 cut(s)	16, 133, 153, 226, 289, 685, 1047
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	2 cut(s)	292, 1045
GluI	GCNGC	7 cut(s)	16, 133, 153, 226, 289, 685, 1047
GsuI	CTGGAG	2 cut(s)	33, 584
HaeII	RGCGCY	1 cut(s)	1047
HaeIII	GGCC	3 cut(s)	132, 152, 225
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	2 cut(s)	208, 626
HhaI	GCGC	2 cut(s)	293, 1046
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	472, 815, 845, 972, 1010, 1151, 1193
Hin6I	GCGC	2 cut(s)	291, 1044
HinP1I	GCGC	2 cut(s)	291, 1044
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	4 cut(s)	53, 263, 578, 1076
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	5 cut(s)	133, 531, 626, 674, 901
Hpy166II	GTNNAC	5 cut(s)	97, 259, 760, 892, 1071
Hpy188I	TCNGA	6 cut(s)	58, 79, 691, 802, 828, 946
Hpy188III	TCNNGA	3 cut(s)	50, 179, 1169
Hpy8I	GTNNAC	5 cut(s)	97, 259, 760, 892, 1071
Hpy99I	CGWCG	3 cut(s)	10, 34, 224
HpyAV	CCTTC	4 cut(s)	51, 166, 445, 751
HpyCH4III	ACNGT	4 cut(s)	145, 375, 640, 778
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	7 cut(s)	314, 466, 841, 1006, 1049, 1089, 1202
HpyF10VI	GCNNNNNNNGC	6 cut(s)	225, 246, 290, 1055, 1252, 1277
HpyF3I	CTNAG	6 cut(s)	55, 76, 111, 236, 945, 1121
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	472, 815, 845, 972, 1010, 1151, 1193
HspAI	GCGC	2 cut(s)	291, 1044
Ksp22I	TGATCA	2 cut(s)	873, 957
Kzo9I	GATC	3 cut(s)	844, 873, 957
LmnI	GCTCC	5 cut(s)	111, 568, 728, 919, 1055
Lsp1109I	GCAGC	3 cut(s)	2, 671, 1033
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	139, 614
MalI	GATC	3 cut(s)	846, 875, 959
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	3 cut(s)	844, 873, 957
MboII	GAAGA	7 cut(s)	36, 167, 298, 740, 759, 1044, 1236
MhlI	GDGCHC	1 cut(s)	1060
MluCI	AATT	8 cut(s)	182, 336, 410, 461, 630, 932, 1173, 1240
MlyI	GAGTC	2 cut(s)	47, 587
MmeI	TCCRAC	5 cut(s)	437, 686, 697, 760, 968
MroXI	GAANNNNTTC	2 cut(s)	807, 1014
MseI	TTAA	3 cut(s)	296, 573, 1176
MslI	CAYNNNNRTG	2 cut(s)	846, 1152
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	128, 654
Mva1269I	GAATGC	2 cut(s)	1136, 1271
MvaI	CCWGG	2 cut(s)	128, 654
MvnI	CGCG	2 cut(s)	135, 291
MwoI	GCNNNNNNNGC	6 cut(s)	225, 246, 290, 1055, 1252, 1277
NdeII	GATC	3 cut(s)	844, 873, 957
NlaIII	CATG	7 cut(s)	472, 815, 845, 972, 1010, 1151, 1193
NlaIV	GGNNCC	4 cut(s)	205, 211, 417, 1024
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	2 cut(s)	139, 614
NspI	RCATGY	2 cut(s)	472, 972
NspV	TTCGAA	1 cut(s)	21
PasI	CCCWGGG	1 cut(s)	127
PciI	ACATGT	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	2 cut(s)	1136, 1271
PdmI	GAANNNNTTC	2 cut(s)	807, 1014
PfeI	GAWTC	2 cut(s)	263, 1076
PkrI	GCNGC	7 cut(s)	17, 134, 154, 227, 290, 686, 1048
PleI	GAGTC	2 cut(s)	47, 586
PpsI	GAGTC	2 cut(s)	47, 586
PscI	ACATGT	1 cut(s)	468
Psp6I	CCWGG	2 cut(s)	126, 652
PspGI	CCWGG	2 cut(s)	126, 652
PspN4I	GGNNCC	4 cut(s)	205, 211, 417, 1024
PspPI	GGNCC	2 cut(s)	130, 415
RseI	CAYNNNNRTG	2 cut(s)	846, 1152
SaqAI	TTAA	3 cut(s)	296, 573, 1176
SatI	GCNGC	7 cut(s)	16, 133, 153, 226, 289, 685, 1047
Sau3AI	GATC	3 cut(s)	844, 873, 957
Sau96I	GGNCC	2 cut(s)	130, 415
SchI	GAGTC	2 cut(s)	47, 587
ScrFI	CCNGG	2 cut(s)	128, 654
SduI	GDGCHC	1 cut(s)	1060
SfaNI	GCATC	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	21
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	846, 1152
Sse9I	AATT	8 cut(s)	182, 336, 410, 461, 630, 932, 1173, 1240
SsiI	CCGC	7 cut(s)	133, 153, 226, 289, 546, 951, 972
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	126, 652
TaaI	ACNGT	4 cut(s)	145, 375, 640, 778
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	21, 1152, 1168
TasI	AATT	8 cut(s)	182, 336, 410, 461, 630, 932, 1173, 1240
TauI	GCSGC	4 cut(s)	135, 155, 228, 291
TfiI	GAWTC	2 cut(s)	263, 1076
Tru1I	TTAA	3 cut(s)	296, 573, 1176
Tru9I	TTAA	3 cut(s)	296, 573, 1176
TseFI	GTSAC	2 cut(s)	139, 614
TseI	GCWGC	3 cut(s)	15, 684, 1046
Tsp45I	GTSAC	2 cut(s)	139, 614
TspDTI	ATGAA	6 cut(s)	501, 546, 800, 1023, 1143, 1206
TspGWI	ACGGA	1 cut(s)	1056
VpaK11BI	GGWCC	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	2 cut(s)	336, 932
XceI	RCATGY	2 cut(s)	472, 972
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XmiI	GTMKAC	3 cut(s)	96, 759, 1070
XmnI	GAANNNNTTC	2 cut(s)	807, 1014
XspI	CTAG	1 cut(s)	543
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.