Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005289

Physical Location & Seq

Genomic Coordinates Forward (+)

34282381 .. 34283424

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG223900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCCACCAAAGGAATTTCAACATTCTGAGACCGCTTTGACCACAATAACATGCGGGTATTCAATATGTTGGAATAAGTCTGGTTTGCATGAAGTCATTCTTGGAACCATAGGAAGAAAGCAAGGCACTGCTAAAGGAGCACGCAGTCCGTCTACTGAATCCCCTATATGCAAAAAACGGCTTTTGCAGATTTTCTTGTCCCTAAGGAATGAATGCCCCACCAAAATCCATGTCAATGAGATTTCATATCGAGAAATTAAGGAAAGGGCTCATGAATACAATGCAATGTCAAAAGTTCTAAAAAGAAGACATACCTTTAGTAATTGGCTATTGAAGCCCCCAGATTTGGAGGCATTCTCTGCTATGGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004000 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_deamin

Protein Analysis

124

Amino Acids

14.12

Weight (kDa)

9.44

Isoelectric Point (pI)

60.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deamin	PF02137	7 - 113	6.7e-18	Adenosine-deaminase (editase) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01760 AT1G01760 AT1G01760 AT1G01760
fragaria_vesca	FvH4_7g13861
malus_domestica	MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1
prunus_persica	Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1
pyrus_communis	pycom01g07990
rosa_chinensis	RchiOBHm_Chr1g0354081
rosa_laevigata	RLG00000028228
rosa_multiflora	Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003
rosa_roxburghii	Rroxscaffold_4G00301240
rosa_rugosa	Rorug01G0241100
rosa_samantha	Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900
rosa_wichuraiana	Rw1G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	2 cut(s)	33, 54
AcsI	RAATTY	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	20, 63, 334
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
Asp700I	GAANNNNTTC	1 cut(s)	96
AxyI	CCTNAGG	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BsaI	GGTCTC	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse21I	CCTNAGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	2 cut(s)	218, 353
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	142, 271
BspACI	CCGC	2 cut(s)	33, 54
BspCNI	CTCAG	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	27, 203
BstMAI	GTCTC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 334, 359
BstNSI	RCATGY	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	313
Bsu36I	CCTNAGG	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	271
CviAII	CATG	4 cut(s)	51, 89, 230, 272
CviJI	RGCY	4 cut(s)	181, 269, 328, 337
CviKI_1	RGCY	4 cut(s)	181, 269, 328, 337
DdeI	CTNAG	2 cut(s)	27, 203
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	4 cut(s)	54, 92, 233, 275
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	4 cut(s)	50, 88, 229, 271
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	271
Hin1II	CATG	4 cut(s)	54, 92, 233, 275
HinfI	GANTC	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	2 cut(s)	251, 272
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	88, 171, 187, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 334, 359
HpyF3I	CTNAG	2 cut(s)	27, 203
Hsp92II	CATG	4 cut(s)	54, 92, 233, 275
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	2 cut(s)	66, 354
MboII	GAAGA	2 cut(s)	126, 318
MhlI	GDGCHC	2 cut(s)	142, 271
MluCI	AATT	3 cut(s)	14, 255, 322
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	234
Mva1269I	GAATGC	2 cut(s)	218, 353
MwoI	GCNNNNNNNGC	3 cut(s)	137, 334, 359
NlaIII	CATG	4 cut(s)	54, 92, 233, 275
NlaIV	GGNNCC	1 cut(s)	106
NspI	RCATGY	1 cut(s)	54
PagI	TCATGA	1 cut(s)	271
PctI	GAATGC	2 cut(s)	218, 353
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	258
SduI	GDGCHC	2 cut(s)	142, 271
SetI	ASST	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	14, 255, 322
SsiI	CCGC	2 cut(s)	33, 54
TaqI	TCGA	1 cut(s)	250
TasI	AATT	3 cut(s)	14, 255, 322
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	105, 225, 234, 288
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.