Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005289

Physical Location & Seq

Genomic Coordinates Forward (+)

21459483 .. 21461910

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G165000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCGTCGCCGTCCTGCTTGGAAACGCCGTCGTCTGCTCTTTCTTCTTCTTCAAAAATAGTGTGGGGCGAGAAGGTCTCGGACAAGAAAGGCAAGCCTCAGGGTCGCGAAGTCACCGTCTTGGCCGCTTTCCTCGTTTCCTCTCCTTCTCAAGAATTGGAAGTTGTCGCGTTGGGAACTGGGACCAAATGTCTTGGGCGTTCACTCTTGAGCTCCAACGGTGATGTCTGTATGGTGCTTATTGGTATACTTGGCTTCTCTGGCACTAGGTTCTTCTATGCACAGATTCAGTGTTTTACTCAAGTTTATAGTAAGCAAAGTGATAGCAATGGAAGCATACAATTGCAAAATGACGATGCCAAAAACTTGCCCTTTGAATTAGACCCTAATGGTGATGGCCAAGGAAAATACAAACTGAGGAAGGGTTTGCAATTACAGTTGTACATATCACAACTACCATGTGATGTTTCACAACTAATTGGCTCGGTTCAAAGAATGCCCGGTTGTGGTGATACAACTTTATCAGTTAGTTGCTCTGACAAGATGGCTCGTTGGAGAGCTCTGCTTTCATTCTATCTGCAACCTGTTTACCTTTCTTCCATTACTGTGGGACAATCGCCTCATGGCTCTGAAATGGTTCTTGTTGTTGATCTCTTGAAACAAGCGCTGCATGATCGCATTCTACCATTGTCAAATGAGCTAATGAGTCCCTTTCAAGTGAACCAGAAGGTTGATAAGAAGCGGCTGTTGCAGATTTTCTTGTCCCTAAGACTTGAATGCCCTGCCAAAATCCCAGTCAATCAGATTTCGTATCGAGAAATCAAGGAAATGGCGCAGGAATTCAATTTAACCTCAAAAATTCTAAAAAGAAGACCTCCCTTTAGTAATTGGCCTTTGAAACTCCCACATTTTGAGGCATTCTCTGCCATGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004000 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_deamin

Protein Analysis

312

Amino Acids

34.4

Weight (kDa)

9.04

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01760 AT1G01760 AT1G01760 AT1G01760
fragaria_vesca	FvH4_7g13861
malus_domestica	MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1
prunus_persica	Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1
pyrus_communis	pycom01g07990
rosa_chinensis	RchiOBHm_Chr1g0354081
rosa_laevigata	RLG00000028228
rosa_multiflora	Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003
rosa_roxburghii	Rroxscaffold_4G00301240
rosa_rugosa	Rorug01G0241100
rosa_samantha	Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900
rosa_wichuraiana	Rw1G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	247
AccII	CGCG	2 cut(s)	108, 170
AciI	CCGC	2 cut(s)	126, 742
AcoI	YGGCCR	2 cut(s)	123, 397
AcsI	RAATTY	2 cut(s)	839, 858
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	443
AfeI	AGCGCT	1 cut(s)	666
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	8 cut(s)	54, 377, 491, 658, 716, 776, 844, 898
AhdI	GACNNNNNGTC	1 cut(s)	189
AluBI	AGCT	3 cut(s)	213, 560, 700
AluI	AGCT	3 cut(s)	213, 560, 700
Alw21I	GWGCWC	2 cut(s)	215, 562
Alw26I	GTCTC	1 cut(s)	82
Aor51HI	AGCGCT	1 cut(s)	666
AoxI	GGCC	3 cut(s)	123, 397, 890
ApeKI	GCWGC	1 cut(s)	667
ApoI	RAATTY	2 cut(s)	839, 858
ArsI	GACNNNNNNTTYG	4 cut(s)	102, 134, 780, 812
Asp700I	GAANNNNTTC	1 cut(s)	636
AspLEI	GCGC	2 cut(s)	667, 835
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	4 cut(s)	106, 233, 404, 521
AvaII	GGWCC	1 cut(s)	183
AxyI	CCTNAGG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	399
BanII	GRGCYC	2 cut(s)	215, 562
BbsI	GAAGAC	1 cut(s)	877
Bbv12I	GWGCWC	2 cut(s)	215, 562
BbvI	GCAGC	1 cut(s)	654
BccI	CCATC	2 cut(s)	389, 538
BceAI	ACGGC	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	668
BisI	GCNGC	3 cut(s)	126, 668, 743
BlsI	GCNGC	3 cut(s)	127, 669, 744
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	183
BmeRI	GACNNNNNGTC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	501
BmrI	ACTGGG	2 cut(s)	189, 788
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	2 cut(s)	189, 788
BpiI	GAAGAC	1 cut(s)	877
BplI	GAGNNNNNCTC	3 cut(s)	62, 94, 905
BpuEI	CTTGAG	3 cut(s)	135, 229, 285
BpuMI	CCSGG	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	2 cut(s)	184, 794
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	113, 407
BseNI	ACTGG	2 cut(s)	184, 794
BseXI	GCAGC	1 cut(s)	654
Bsh1236I	CGCG	2 cut(s)	108, 170
BshFI	GGCC	3 cut(s)	125, 399, 892
BsiHKAI	GWGCWC	2 cut(s)	215, 562
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	4 cut(s)	196, 624, 693, 748
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	4 cut(s)	196, 624, 693, 748
BsmI	GAATGC	4 cut(s)	501, 678, 782, 917
BsnI	GGCC	3 cut(s)	125, 399, 892
Bso31I	GGTCTC	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	215, 562
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	649, 673
Bsp68I	TCGCGA	1 cut(s)	108
BspACI	CCGC	2 cut(s)	126, 742
BspANI	GGCC	3 cut(s)	125, 399, 892
BspCNI	CTCAG	2 cut(s)	112, 408
BspFNI	CGCG	2 cut(s)	108, 170
BspLI	GGNNCC	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	184, 794
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	2 cut(s)	649, 673
BssNAI	GTATAC	1 cut(s)	248
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	400
Bst1107I	GTATAC	1 cut(s)	248
Bst4CI	ACNGT	4 cut(s)	118, 221, 438, 607
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	99, 416, 767
BstFNI	CGCG	2 cut(s)	108, 170
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	2 cut(s)	667, 835
BstKTI	GATC	2 cut(s)	652, 676
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	649, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 333, 748, 923
BstSCI	CCNGG	1 cut(s)	499
BstUI	CGCG	2 cut(s)	108, 170
BstV1I	GCAGC	1 cut(s)	654
BstV2I	GAAGAC	1 cut(s)	877
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstZ17I	GTATAC	1 cut(s)	248
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	125, 399, 892
BtsIMutI	CAGTG	1 cut(s)	296
BtuMI	TCGCGA	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	2 cut(s)	667, 835
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	4 cut(s)	459, 623, 671, 928
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	99, 416, 767
DpnI	GATC	2 cut(s)	651, 675
DpnII	GATC	2 cut(s)	649, 673
DriI	GACNNNNNGTC	1 cut(s)	189
EaeI	YGGCCR	2 cut(s)	123, 397
Eam1105I	GACNNNNNGTC	1 cut(s)	189
Ecl136II	GAGCTC	2 cut(s)	213, 560
Eco130I	CCWWGG	1 cut(s)	400
Eco24I	GRGCYC	2 cut(s)	215, 562
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	183
Eco47III	AGCGCT	1 cut(s)	666
Eco53kI	GAGCTC	2 cut(s)	213, 560
Eco81I	CCTNAGG	1 cut(s)	99
EcoICRI	GAGCTC	2 cut(s)	213, 560
EcoRI	GAATTC	1 cut(s)	839
EcoT14I	CCWWGG	1 cut(s)	400
EcoT38I	GRGCYC	2 cut(s)	215, 562
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	4 cut(s)	462, 626, 674, 931
FaqI	GGGAC	4 cut(s)	196, 624, 693, 748
FatI	CATG	4 cut(s)	458, 622, 670, 927
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	126, 668, 743
FriOI	GRGCYC	2 cut(s)	215, 562
Fsp4HI	GCNGC	3 cut(s)	126, 668, 743
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	2 cut(s)	666, 834
GluI	GCNGC	3 cut(s)	126, 668, 743
HaeII	RGCGCY	1 cut(s)	668
HaeIII	GGCC	3 cut(s)	125, 399, 892
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	2 cut(s)	667, 835
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	462, 626, 674, 931
Hin6I	GCGC	2 cut(s)	665, 833
HinP1I	GCGC	2 cut(s)	665, 833
HinfI	GANTC	2 cut(s)	286, 706
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	4 cut(s)	106, 233, 404, 521
Hpy166II	GTNNAC	4 cut(s)	203, 248, 589, 721
Hpy188I	TCNGA	4 cut(s)	82, 538, 631, 804
Hpy188III	TCNNGA	5 cut(s)	107, 152, 208, 655, 815
Hpy8I	GTNNAC	4 cut(s)	203, 248, 589, 721
Hpy99I	CGWCG	2 cut(s)	10, 34
HpyAV	CCTTC	4 cut(s)	67, 156, 415, 721
HpyCH4III	ACNGT	4 cut(s)	118, 221, 438, 607
HpyCH4V	TGCA	6 cut(s)	281, 346, 430, 580, 670, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 333, 748, 923
HpyF3I	CTNAG	3 cut(s)	99, 416, 767
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	462, 626, 674, 931
HspAI	GCGC	2 cut(s)	665, 833
Kzo9I	GATC	2 cut(s)	649, 673
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	1 cut(s)	654
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	651, 675
MboI	GATC	2 cut(s)	649, 673
MboII	GAAGA	6 cut(s)	36, 39, 42, 265, 588, 882
MfeI	CAATTG	1 cut(s)	341
MhlI	GDGCHC	2 cut(s)	215, 562
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	9 cut(s)	155, 341, 377, 431, 477, 839, 844, 858, 886
MluNI	TGGCCA	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	715
MmeI	TCCRAC	2 cut(s)	240, 533
MnlI	CCTC	8 cut(s)	108, 143, 151, 411, 630, 862, 885, 907
Mox20I	TGGCCA	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	1 cut(s)	848
MslI	CAYNNNNRTG	1 cut(s)	605
Msp20I	TGGCCA	1 cut(s)	399
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	341
Mva1269I	GAATGC	4 cut(s)	501, 678, 782, 917
MvnI	CGCG	2 cut(s)	108, 170
MwoI	GCNNNNNNNGC	4 cut(s)	261, 333, 748, 923
NciI	CCSGG	1 cut(s)	501
NdeII	GATC	2 cut(s)	649, 673
NlaIII	CATG	4 cut(s)	462, 626, 674, 931
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	112
NruI	TCGCGA	1 cut(s)	108
PctI	GAATGC	4 cut(s)	501, 678, 782, 917
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	127, 669, 744
PleI	GAGTC	1 cut(s)	714
PpsI	GAGTC	1 cut(s)	714
Psp124BI	GAGCTC	2 cut(s)	215, 562
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	183
RruI	TCGCGA	1 cut(s)	108
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	605
SacI	GAGCTC	2 cut(s)	215, 562
SaqAI	TTAA	1 cut(s)	848
SatI	GCNGC	3 cut(s)	126, 668, 743
Sau3AI	GATC	2 cut(s)	649, 673
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	215, 562
SfaNI	GCATC	1 cut(s)	346
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	3 cut(s)	150, 208, 300
SmoI	CTYRAG	3 cut(s)	150, 208, 300
Sse9I	AATT	9 cut(s)	155, 341, 377, 431, 477, 839, 844, 858, 886
SsiI	CCGC	2 cut(s)	126, 742
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	2 cut(s)	215, 562
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	4 cut(s)	118, 221, 438, 607
TaqI	TCGA	1 cut(s)	814
TasI	AATT	9 cut(s)	155, 341, 377, 431, 477, 839, 844, 858, 886
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	2 cut(s)	128, 745
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	848
Tru9I	TTAA	1 cut(s)	848
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	667
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	2 cut(s)	839, 858
XmiI	GTMKAC	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.