Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006777.1

Orthogroup ID

OG0005289

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 171

Gene Structure 170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006777.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 170 bp

atgacgtcgcctcgctgcttcgaaacgccgtcgtttcgtccttcttctccagactcagactggggacacaaggtctcagacaaggtgctctcagtctacaactcgctccctaagaaagggaagccccagggccgcgaagtcaccgtcttggccgccttcctcctctcctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004000 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_deamin

Protein Analysis

57

Amino Acids

6.27

Weight (kDa)

9.43

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01760 AT1G01760 AT1G01760 AT1G01760
fragaria_vesca	FvH4_7g13861
malus_domestica	MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1
prunus_persica	Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1
pyrus_communis	pycom01g07990
rosa_chinensis	RchiOBHm_Chr1g0354081
rosa_laevigata	RLG00000028228
rosa_multiflora	Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003
rosa_roxburghii	Rroxscaffold_4G00301240
rosa_rugosa	Rorug01G0241100
rosa_samantha	Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900
rosa_wichuraiana	Rw1G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	133, 153
AcoI	YGGCCR	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	116
AhdI	GACNNNNNGTC	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	126
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	2 cut(s)	130, 150
ApeKI	GCWGC	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	2
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	16, 133, 153
BlsI	GCNGC	3 cut(s)	17, 134, 154
Bme1390I	CCNGG	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	126, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	126, 127
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	3 cut(s)	69, 90, 105
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	2 cut(s)	152, 157
BseXI	GCAGC	1 cut(s)	2
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	132, 152
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	132, 152
Bso31I	GGTCTC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	133, 153
BspANI	GGCC	2 cut(s)	132, 152
BspCNI	CTCAG	3 cut(s)	68, 89, 104
BspFNI	CGCG	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	126, 127
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	21
BstDEI	CTNAG	4 cut(s)	55, 76, 91, 111
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	2
BsuRI	GGCC	2 cut(s)	132, 152
Cfr13I	GGNCC	1 cut(s)	130
CviJI	RGCY	3 cut(s)	124, 132, 152
CviKI_1	RGCY	3 cut(s)	124, 132, 152
DdeI	CTNAG	4 cut(s)	55, 76, 91, 111
DriI	GACNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	126
FaqI	GGGAC	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	16, 133, 153
Fsp4HI	GCNGC	3 cut(s)	16, 133, 153
GluI	GCNGC	3 cut(s)	16, 133, 153
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	132, 152
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	58, 79
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	2 cut(s)	10, 34
HpyAV	CCTTC	2 cut(s)	51, 166
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	5
HpyF3I	CTNAG	4 cut(s)	55, 76, 91, 111
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	4 cut(s)	46, 63, 113, 140
Lsp1109I	GCAGC	1 cut(s)	2
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	21, 170
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	21
PasI	CCCWGGG	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	17, 134, 154
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	130
SatI	GCNGC	3 cut(s)	16, 133, 153
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	3 cut(s)	8, 75, 87
SfuI	TTCGAA	1 cut(s)	21
SsiI	CCGC	2 cut(s)	133, 153
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	21
TauI	GCSGC	2 cut(s)	135, 155
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	139
XagI	CCTNNNNNAGG	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	96
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.