Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020013.1

Orthogroup ID

OG0005289

Physical Location & Seq

Genomic Coordinates Reverse (-)

6870 .. 7697

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020013.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgcttgcacttcatatagtgtacagagctttgctttccttctttcttcaacctgtatacctttcttccattactgttggacaatcccctatcaactccgaaaaggttcatgtggctgattgtctgaaacaagctttgcatgatcgtgtcctaccattatcaagtgagctgatcagtccctttcaggtgaaccagccactactctgggaagctccaatgccaccaaaggaatttcaacattctgagaccgctttgatcactataacatgcgggtattcaatatgttggaataagtctggtttgcatgaagtcattcttggaaccataggaagaaagcaaggcgctgcaaaaggagcacgcagtccgtctactgaatcccctatatgcaaaaaacggcttttggagattttcttgtccctaaggaatgaatgccccaccaaaatccatgtcgatgagatgtcgtatcgagaaattaaggtagaatcagtattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004000 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_deamin

Protein Analysis

164

Amino Acids

18.4

Weight (kDa)

8.29

Isoelectric Point (pI)

63.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01760 AT1G01760 AT1G01760 AT1G01760
fragaria_vesca	FvH4_7g13861
malus_domestica	MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1
prunus_persica	Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1
pyrus_communis	pycom01g07990
rosa_chinensis	RchiOBHm_Chr1g0354081
rosa_laevigata	RLG00000028228
rosa_multiflora	Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003
rosa_roxburghii	Rroxscaffold_4G00301240
rosa_rugosa	Rorug01G0241100
rosa_samantha	Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900
rosa_wichuraiana	Rw1G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	57, 368
AciI	CCGC	2 cut(s)	249, 270
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	50, 236, 279
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	4 cut(s)	29, 134, 169, 212
AluI	AGCT	4 cut(s)	29, 134, 169, 212
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
Asp700I	GAANNNNTTC	2 cut(s)	105, 312
AspLEI	GCGC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	199
AxyI	CCTNAGG	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	410
BclI	TGATCA	2 cut(s)	171, 255
BcoDI	GTCTC	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	345
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	239
Bse21I	CCTNAGG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	358
BslFI	GGGAC	2 cut(s)	162, 400
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	2 cut(s)	162, 400
BsmI	GAATGC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	142, 171, 255
BspACI	CCGC	2 cut(s)	249, 270
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	21
BssMI	GATC	3 cut(s)	142, 171, 255
BssNAI	GTATAC	1 cut(s)	58
Bst1107I	GTATAC	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	6, 358
BstDEI	CTNAG	2 cut(s)	243, 419
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	3 cut(s)	145, 174, 258
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	3 cut(s)	142, 171, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstZ17I	GTATAC	1 cut(s)	58
Bsu36I	CCTNAGG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	6, 358
CfoI	GCGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	5 cut(s)	110, 140, 267, 305, 446
CviJI	RGCY	7 cut(s)	29, 116, 134, 169, 196, 212, 397
CviKI_1	RGCY	7 cut(s)	29, 116, 134, 169, 196, 212, 397
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	2 cut(s)	243, 419
DpnI	GATC	3 cut(s)	144, 173, 257
DpnII	GATC	3 cut(s)	142, 171, 255
Eco31I	GGTCTC	1 cut(s)	239
Eco81I	CCTNAGG	1 cut(s)	419
FaeI	CATG	5 cut(s)	113, 143, 270, 308, 449
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	2 cut(s)	162, 400
FatI	CATG	5 cut(s)	109, 139, 266, 304, 445
FauI	CCCGC	1 cut(s)	263
FbaI	TGATCA	2 cut(s)	171, 255
FblI	GTMKAC	2 cut(s)	57, 368
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	345
HhaI	GCGC	1 cut(s)	344
Hin1II	CATG	5 cut(s)	113, 143, 270, 308, 449
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	2 cut(s)	374, 482
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	4 cut(s)	22, 58, 190, 369
Hpy188I	TCNGA	4 cut(s)	100, 126, 244, 494
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	4 cut(s)	22, 58, 190, 369
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	5 cut(s)	8, 139, 304, 347, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	243, 419
Hsp92II	CATG	5 cut(s)	113, 143, 270, 308, 449
HspAI	GCGC	1 cut(s)	342
Ksp22I	TGATCA	2 cut(s)	171, 255
Kzo9I	GATC	3 cut(s)	142, 171, 255
LmnI	GCTCC	2 cut(s)	217, 353
LpnPI	CCDG	5 cut(s)	66, 170, 190, 206, 282
Lsp1109I	GCAGC	1 cut(s)	331
MalI	GATC	3 cut(s)	144, 173, 257
MboI	GATC	3 cut(s)	142, 171, 255
MboII	GAAGA	3 cut(s)	38, 57, 342
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	2 cut(s)	230, 471
MmeI	TCCRAC	2 cut(s)	58, 266
MroXI	GAANNNNTTC	2 cut(s)	105, 312
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	2 cut(s)	144, 450
Mva1269I	GAATGC	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	3 cut(s)	142, 171, 255
NlaIII	CATG	5 cut(s)	113, 143, 270, 308, 449
NlaIV	GGNNCC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	270
PctI	GAATGC	1 cut(s)	434
PdmI	GAANNNNTTC	2 cut(s)	105, 312
PfeI	GAWTC	2 cut(s)	374, 482
PkrI	GCNGC	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	322
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	2 cut(s)	144, 450
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	3 cut(s)	142, 171, 255
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	9 cut(s)	31, 55, 63, 108, 136, 171, 189, 214, 480
SmiMI	CAYNNNNRTG	2 cut(s)	144, 450
Sse9I	AATT	2 cut(s)	230, 471
SsiI	CCGC	2 cut(s)	249, 270
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	450, 466
TasI	AATT	2 cut(s)	230, 471
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	374, 482
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	98, 321, 441
TspGWI	ACGGA	1 cut(s)	354
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	270
XmiI	GTMKAC	2 cut(s)	57, 368
XmnI	GAANNNNTTC	2 cut(s)	105, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.