Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005289

Physical Location & Seq

Genomic Coordinates Forward (+)

12355702 .. 12358011

Gene Structure 2310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13861.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCGTCAACGATTCCCACGCTGAGGTTCTTCTATGCACAGATTGGATGTGTTTCGCAAATTTATAGCGAGGAAAGAGATGACAATGCAAGCAAACGGTTGCGAAATGATGATGCGAAAAAGTTTGTTTTCGAATTGGAACCGGATGGTGGTGGTGGAGAAAGGAAATACGTAATGAGGAAGGGTTGGAAATTGCACATGTATATATCGCAACTGCCTTGTGGGATTGCTTCGCCGAGTTCTCTGTTGTCTCCAGTGAAGAATGTCTCACCTACTGGAGGCATAAACAATGGTGACGCTTCACAACTAATTGGCACGGTTCAAAGAAAGCCTGGCCGTGGGGATACAACATTATCAGTTAGTTGCTCTGACAAGATAGCCCGTTGGAATGTCGTTGGAGTTCAAGGAGCTTTGCTTTCCTTCTTTCTTCAACCAGTATACCTTTCTTCCATTACTGTTGGACAATCCCCTAACAACTCTGAGAAGGTTCTTGTGGTTGATTGTCTGAAACAAGCTCTGCATGATCGTGTCCTACCATTATCCAGTGAGCTGACCAGTCCTTTCCAAGTCAACCAGCCACTACTCTTGGAAGCTCCAATGCCACCAAAGGAATTTCAACATTCTGAGACCGCTTTGACCACTATAACATGCGGGTATTCAATATGTTGGAATAAATCTGGTTTGCATGAAGTCATTCTTGGAACCATAGGAAGGAAGCAAGGCGCTGCAAAAGGGGCACGCAGTCCGTCTACTGAATCCCCTATATGCAAAAAGCGGCTTTTGGAGATGTTCTTGTCCCTAAGAAATGAATGCCCCACCAAAATCCATGTTAATGAGATTTCATATCGAGAAATCAAGGAAAGGGCTTATGAATACAATGCAACGTCAAAAGTTCTAAAAAGAACACATACCTTTAGTAATTGGCTATTGAAGCCCCCAGATTTGGAGACATTCTCTGCTATGGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004000 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_deamin

Protein Analysis

324

Amino Acids

35.79

Weight (kDa)

9.02

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deamin	PF02137	38 - 312	2.7e-56	Adenosine-deaminase (editase) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01760 AT1G01760 AT1G01760 AT1G01760
fragaria_vesca	FvH4_7g13861
malus_domestica	MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1
prunus_persica	Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1
pyrus_communis	pycom01g07990
rosa_chinensis	RchiOBHm_Chr1g0354081
rosa_laevigata	RLG00000028228
rosa_multiflora	Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003
rosa_roxburghii	Rroxscaffold_4G00301240
rosa_rugosa	Rorug01G0241100
rosa_samantha	Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900
rosa_wichuraiana	Rw1G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	438, 749
AciI	CCGC	3 cut(s)	630, 651, 775
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	60, 611
AfiI	CCNNNNNNNGG	6 cut(s)	24, 149, 278, 338, 711, 943
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	6 cut(s)	323, 404, 431, 617, 660, 931
AjnI	CCWGG	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
AluBI	AGCT	4 cut(s)	410, 515, 550, 593
AluI	AGCT	4 cut(s)	410, 515, 550, 593
Alw26I	GTCTC	4 cut(s)	255, 271, 620, 941
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	2 cut(s)	60, 611
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	725
AsuHPI	GGTGA	2 cut(s)	261, 305
AsuII	TTCGAA	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	739
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	333
BciVI	GTATCC	1 cut(s)	337
BcoDI	GTCTC	4 cut(s)	255, 271, 620, 941
BfoI	RGCGCY	1 cut(s)	726
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	726, 776
BlsI	GCNGC	2 cut(s)	727, 777
Bme1390I	CCNGG	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	141, 703
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	938, 970
BpmI	CTGGAG	2 cut(s)	237, 297
Bpu10I	CCTNAGC	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	337
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	6 cut(s)	24, 149, 278, 338, 711, 943
Bse1I	ACTGG	5 cut(s)	254, 280, 434, 543, 555
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	53, 151
BseLI	CCNNNNNNNGG	6 cut(s)	24, 149, 278, 338, 711, 943
BseMII	CTCAG	3 cut(s)	14, 471, 615
BseNI	ACTGG	5 cut(s)	254, 280, 434, 543, 555
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	1 cut(s)	712
BshFI	GGCC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	781
BslI	CCNNNNNNNGG	6 cut(s)	24, 149, 278, 338, 711, 943
BsmAI	GTCTC	4 cut(s)	255, 271, 620, 941
BsmFI	GGGAC	1 cut(s)	781
BsmI	GAATGC	1 cut(s)	815
BsnI	GGCC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp143I	GATC	1 cut(s)	523
BspACI	CCGC	3 cut(s)	630, 651, 775
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	3 cut(s)	15, 472, 616
BspLI	GGNNCC	2 cut(s)	141, 703
BspT104I	TTCGAA	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	620
BsrI	ACTGG	5 cut(s)	254, 280, 434, 543, 555
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	1 cut(s)	523
BssNAI	GTATAC	1 cut(s)	439
Bst1107I	GTATAC	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	99, 319, 457
BstBAI	YACGTR	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	91, 739
BstDEI	CTNAG	4 cut(s)	23, 480, 624, 800
BstDSI	CCRYGG	1 cut(s)	337
BstENI	CCTNNNNNAGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	53, 151
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	4 cut(s)	255, 271, 620, 941
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	2 cut(s)	734, 931
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	2 cut(s)	202, 651
BstSCI	CCNGG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	739
BstSNI	TACGTA	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	712
BstZ17I	GTATAC	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	53, 151
BtsIMutI	CAGTG	2 cut(s)	261, 550
Cac8I	GCNNGC	2 cut(s)	91, 739
CfoI	GCGC	1 cut(s)	725
CseI	GACGC	1 cut(s)	305
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	5 cut(s)	199, 521, 648, 686, 827
DdeI	CTNAG	4 cut(s)	23, 480, 624, 800
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	334
Eco105I	TACGTA	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	5 cut(s)	202, 524, 651, 689, 830
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	1 cut(s)	781
FatI	CATG	5 cut(s)	198, 520, 647, 685, 826
FauI	CCCGC	1 cut(s)	644
FblI	GTMKAC	2 cut(s)	438, 749
Fnu4HI	GCNGC	2 cut(s)	726, 776
FokI	GGATG	2 cut(s)	60, 158
Fsp4HI	GCNGC	2 cut(s)	726, 776
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	2 cut(s)	726, 776
GsuI	CTGGAG	2 cut(s)	237, 297
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	202, 524, 651, 689, 830
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HincII	GTYRAC	2 cut(s)	9, 571
HindII	GTYRAC	2 cut(s)	9, 571
HinfI	GANTC	2 cut(s)	13, 755
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	2 cut(s)	261, 305
Hpy166II	GTNNAC	4 cut(s)	9, 439, 571, 750
Hpy188I	TCNGA	4 cut(s)	370, 481, 507, 625
Hpy188III	TCNNGA	1 cut(s)	848
Hpy8I	GTNNAC	4 cut(s)	9, 439, 571, 750
HpyAV	CCTTC	4 cut(s)	175, 430, 478, 705
HpyCH4III	ACNGT	3 cut(s)	99, 319, 457
HpyCH4IV	ACGT	2 cut(s)	171, 884
HpyCH4V	TGCA	8 cut(s)	38, 89, 196, 520, 685, 728, 768, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	734, 931
HpyF3I	CTNAG	4 cut(s)	23, 480, 624, 800
HpySE526I	ACGT	2 cut(s)	171, 884
Hsp92II	CATG	5 cut(s)	202, 524, 651, 689, 830
HspAI	GCGC	1 cut(s)	723
Kzo9I	GATC	1 cut(s)	523
LmnI	GCTCC	2 cut(s)	407, 598
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	2 cut(s)	171, 884
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	4 cut(s)	22, 271, 419, 438
MhlI	GDGCHC	1 cut(s)	739
MluCI	AATT	6 cut(s)	60, 134, 191, 309, 611, 919
MmeI	TCCRAC	5 cut(s)	167, 365, 376, 439, 647
MnlI	CCTC	4 cut(s)	18, 64, 171, 272
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	1 cut(s)	831
MslI	CAYNNNNRTG	2 cut(s)	525, 831
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	815
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	734, 931
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	5 cut(s)	202, 524, 651, 689, 830
NlaIV	GGNNCC	2 cut(s)	141, 703
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	2 cut(s)	202, 651
NspV	TTCGAA	1 cut(s)	132
PciI	ACATGT	1 cut(s)	198
PctI	GAATGC	1 cut(s)	815
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	13, 755
PkrI	GCNGC	2 cut(s)	727, 777
Ppu21I	YACGTR	1 cut(s)	172
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	141, 703
RseI	CAYNNNNRTG	2 cut(s)	525, 831
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	2 cut(s)	726, 776
Sau3AI	GATC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	132
SmiMI	CAYNNNNRTG	2 cut(s)	525, 831
SnaBI	TACGTA	1 cut(s)	172
Sse9I	AATT	6 cut(s)	60, 134, 191, 309, 611, 919
SsiI	CCGC	3 cut(s)	630, 651, 775
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	99, 319, 457
TaiI	ACGT	2 cut(s)	174, 887
TaqI	TCGA	2 cut(s)	132, 847
TasI	AATT	6 cut(s)	60, 134, 191, 309, 611, 919
TauI	GCSGC	1 cut(s)	778
TfiI	GAWTC	2 cut(s)	13, 755
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	2 cut(s)	261, 550
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	702, 822, 831, 885
TspGWI	ACGGA	1 cut(s)	735
TspRI	CASTG	2 cut(s)	261, 550
XagI	CCTNNNNNAGG	1 cut(s)	276
XapI	RAATTY	2 cut(s)	60, 611
XceI	RCATGY	2 cut(s)	202, 651
XmiI	GTMKAC	2 cut(s)	438, 749
XmnI	GAANNNNTTC	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.