MD01G1055100.v1.1

tRNA-specific adenosine deaminase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
15956369 .. 15967398
11030 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1055100.v1.1.491

Sequence Viewer

Length: 1320 bp
ATGGCGTCGACTCCCTGCTCCGAAACGCCGTCGTCTCCTTCTCGTTCTTCCTCAGAAGTAGCATGGGGCACTAAGGTCTCAGACAAAGTGTTCGCACTCTACAACTCCCTCCCCAAGAAAGGCAAGCCTCAGGGCCGCGAAGTCACCGTCTTGGCCGCTTTCCTCCTCTCCTCCCCTTCTCAAGAGCTTGAAGTCGTCGTATTGGGAACTGGGACCAAATGCATAGGGCGGTCACTGAGGAGTCCCCACGGCGACGTCGTCAACGATTCCCACGCCGAGATTGTAGCTCGAAGATCTTTACTCAGGTTCTTCTATGCACAGATTCAATGTCTTTCTCAAATTTGTAGTAAGAAGAGTGATGACGATGAAAGCACGCAGATTCAAAACTGTGATGCTAAAAACTTGATTTTTGAATTGGACCCGGGTGGTGATGGCGAAAGAAAATACACAATGAAGAAGGATTGGAATTTGCACTTGTACATATCGCAACTGCCATGTGGGGTTGCTTCTCCGAGTTCACTATTGTCTCCTCCAAAACATACTGCACCGAGAGAACGGGGTTCATCTTTGGACGAGCTTAATAATGTCATCGCAGGAGAGGCTCCACCAAAGACTAATGGTAGTGATGCTTCACAACTAATTGGCTTGGTACAAAGAAAGCCTGGTCGCGGTGATACAACATTATCAGTTAGTTGCTCTGACAAGATAGCCCGCTGGAATGTTGTTGGAGTTCAAGGATCTTTGCTTTCATTCTTTCTGCAACCTGTATACCTTTCTTCGGTCACTGTTGGGCAATCCCGAAACTATAAAATGGTTTCTGTGGTTGATCAATTGAAACAAGCGTTGCACGATCGCGTTCAACCATTATCAAATGAGCTGATGAGTCCTTTCCAAGTGAACCAGCCATTAATATGGGCAGCTCCAACACCACAAAAGGAATTTCAGCATTCTGAGACAGCTTTGACCACTTTAACATGCGGGTATTCGATATGTTGGAATAAATCTGGTCTGCATGAAGTCATTCTTGGAACCACCGGAAGAAAGCAAGGAACTGCTGCGAAAGGGGCACATTATCCATCAACTGAGTCATTATTATGCAAAAAGCGGCTGTTGGAAATTTTCTTGTCTCTAAGACATGAATGCCCTATCAAAATCCCAGTGAATGAGATGTCTTATCAAGAAATCAAGGAAAGGGCACAGGAATACAATTTAACCTCAAAACTTCTAAAAACAAGACCTCCCTTTAGTAATTGGCCATTGAAACCCCCACATTTTGAGGCATTCGCTGCCATGATACAGAATCAGGACATCAGTGGTTAG

Protein Analysis

440

Amino Acids

48.31

Weight (kDa)

8.84

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_deamin PF02137 68 - 422 1.2e-80 Adenosine-deaminase (editase) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccI GTMKAC 2 cut(s) 8, 768
AccII CGCG 3 cut(s) 138, 669, 855
AciI CCGC 7 cut(s) 136, 156, 229, 669, 712, 978, 1105
AclWI GGATC 1 cut(s) 745
AcoI YGGCCR 2 cut(s) 153, 1253
AcsI RAATTY 4 cut(s) 339, 466, 938, 1116
AcyI GRCGYC 2 cut(s) 5, 255
AfaI GTAC 2 cut(s) 479, 651
AfiI CCNNNNNNNGG 3 cut(s) 119, 668, 778
AgsI TTSAA 8 cut(s) 191, 326, 383, 413, 734, 835, 860, 1261
AjnI CCWGG 1 cut(s) 661
AjuI GAANNNNNNNTTGG 2 cut(s) 1008, 1040
AluBI AGCT 6 cut(s) 187, 287, 577, 877, 920, 959
AluI AGCT 6 cut(s) 187, 287, 577, 877, 920, 959
Alw26I GTCTC 5 cut(s) 39, 82, 531, 947, 1131
AlwI GGATC 1 cut(s) 745
Ama87I CYCGRG 1 cut(s) 421
AoxI GGCC 3 cut(s) 133, 153, 1253
ApeKI GCWGC 3 cut(s) 917, 1055, 1286
ApoI RAATTY 4 cut(s) 339, 466, 938, 1116
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 132, 164
AseI ATTAAT 1 cut(s) 908
Asp700I GAANNNNTTC 1 cut(s) 1020
AspS9I GGNCC 3 cut(s) 133, 213, 418
AsuC2I CCSGG 2 cut(s) 422, 423
AsuHPI GGTGA 3 cut(s) 136, 440, 683
AvaI CYCGRG 1 cut(s) 421
AvaII GGWCC 2 cut(s) 213, 418
AxyI CCTNAGG 1 cut(s) 129
BaeGI GKGCMC 3 cut(s) 71, 1069, 1198
BalI TGGCCA 1 cut(s) 1255
BarI GAAGNNNNNNTAC 2 cut(s) 613, 645
BbvI GCAGC 3 cut(s) 929, 1042, 1273
BccI CCATC 2 cut(s) 425, 1084
BceAI ACGGC 2 cut(s) 13, 265
BciT130I CCWGG 1 cut(s) 663
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 2 cut(s) 422, 423
BcoDI GTCTC 5 cut(s) 39, 82, 531, 947, 1131
BglII AGATCT 1 cut(s) 293
BisI GCNGC 6 cut(s) 136, 156, 918, 1056, 1106, 1287
BlsI GCNGC 6 cut(s) 137, 157, 919, 1057, 1107, 1288
Bme1390I CCNGG 3 cut(s) 422, 423, 663
Bme18I GGWCC 2 cut(s) 213, 418
BmeT110I CYCGRG 1 cut(s) 421
BmgT120I GGNCC 3 cut(s) 133, 213, 418
BmiI GGNNCC 4 cut(s) 214, 420, 603, 1030
BmrFI CCNGG 3 cut(s) 422, 423, 663
BmrI ACTGGG 2 cut(s) 219, 1151
BmsI GCATC 2 cut(s) 382, 616
BmuI ACTGGG 2 cut(s) 219, 1151
BpuEI CTTGAG 1 cut(s) 165
BpuMI CCSGG 2 cut(s) 422, 423
BsaHI GRCGYC 2 cut(s) 5, 255
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 247, 421
BsaWI WCCGGW 1 cut(s) 1034
BsaXI ACNNNNNCTCC 2 cut(s) 1222, 1252
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 668, 778
Bse1I ACTGG 2 cut(s) 214, 1157
Bse21I CCTNAGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 247, 421
BseLI CCNNNNNNNGG 3 cut(s) 119, 668, 778
BseMII CTCAG 7 cut(s) 66, 93, 143, 227, 316, 942, 1074
BseNI ACTGG 2 cut(s) 214, 1157
BseRI GAGGAG 4 cut(s) 155, 160, 253, 519
BseSI GKGCMC 3 cut(s) 71, 1069, 1198
BseXI GCAGC 3 cut(s) 929, 1042, 1273
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 3 cut(s) 138, 669, 855
Bsh1285I CGRYCG 1 cut(s) 853
BshFI GGCC 3 cut(s) 135, 155, 1255
BsiEI CGRYCG 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 421
BsiSI CCGG 2 cut(s) 422, 1035
BslFI GGGAC 2 cut(s) 226, 228
BslI CCNNNNNNNGG 3 cut(s) 119, 668, 778
BsmAI GTCTC 5 cut(s) 39, 82, 531, 947, 1131
BsmBI CGTCTC 1 cut(s) 39
BsmFI GGGAC 2 cut(s) 226, 228
BsmI GAATGC 3 cut(s) 946, 1145, 1280
BsnI GGCC 3 cut(s) 135, 155, 1255
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 421
Bsp1286I GDGCHC 3 cut(s) 71, 1069, 1198
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 4 cut(s) 293, 737, 826, 850
BspACI CCGC 7 cut(s) 136, 156, 229, 669, 712, 978, 1105
BspANI GGCC 3 cut(s) 135, 155, 1255
BspCNI CTCAG 7 cut(s) 65, 92, 142, 228, 315, 943, 1075
BspFNI CGCG 3 cut(s) 138, 669, 855
BspLI GGNNCC 4 cut(s) 214, 420, 603, 1030
BspPI GGATC 1 cut(s) 745
BspTNI GGTCTC 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 2 cut(s) 214, 1157
BssECI CCNNGG 2 cut(s) 247, 421
BssMI GATC 4 cut(s) 293, 737, 826, 850
BssNAI GTATAC 1 cut(s) 769
BssNI GRCGYC 2 cut(s) 5, 255
Bst1107I GTATAC 1 cut(s) 769
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 3 cut(s) 148, 389, 787
Bst6I CTCTTC 1 cut(s) 347
BstACI GRCGYC 2 cut(s) 5, 255
BstAPI GCANNNNNTGC 1 cut(s) 1286
BstAUI TGTACA 1 cut(s) 477
BstC8I GCNNGC 3 cut(s) 125, 374, 712
BstDEI CTNAG 9 cut(s) 52, 72, 79, 129, 236, 302, 951, 1083, 1130
BstDSI CCRYGG 1 cut(s) 247
BstFNI CGCG 3 cut(s) 138, 669, 855
BstKTI GATC 4 cut(s) 296, 740, 829, 853
BstMAI GTCTC 5 cut(s) 39, 82, 531, 947, 1131
BstMBI GATC 4 cut(s) 293, 737, 826, 850
BstMCI CGRYCG 1 cut(s) 853
BstMWI GCNNNNNNNGC 3 cut(s) 599, 1064, 1286
BstNI CCWGG 1 cut(s) 663
BstNSI RCATGY 1 cut(s) 978
BstSCI CCNGG 3 cut(s) 420, 421, 661
BstSLI GKGCMC 3 cut(s) 71, 1069, 1198
BstUI CGCG 3 cut(s) 138, 669, 855
BstV1I GCAGC 3 cut(s) 929, 1042, 1273
BstX2I RGATCY 2 cut(s) 293, 737
BstXI CCANNNNNNTGG 1 cut(s) 912
BstYI RGATCY 2 cut(s) 293, 737
BstZ17I GTATAC 1 cut(s) 769
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 3 cut(s) 135, 155, 1255
BtgI CCRYGG 1 cut(s) 247
BtgZI GCGATG 1 cut(s) 574
BtsIMutI CAGTG 4 cut(s) 233, 783, 1164, 1318
Cac8I GCNNGC 3 cut(s) 125, 374, 712
Cfr13I GGNCC 3 cut(s) 133, 213, 418
Cfr9I CCCGGG 1 cut(s) 421
Csp6I GTAC 2 cut(s) 478, 650
CviAII CATG 6 cut(s) 63, 495, 975, 1013, 1136, 1291
CviQI GTAC 2 cut(s) 478, 650
DdeI CTNAG 9 cut(s) 52, 72, 79, 129, 236, 302, 951, 1083, 1130
DpnI GATC 4 cut(s) 295, 739, 828, 852
DpnII GATC 4 cut(s) 293, 737, 826, 850
EaeI YGGCCR 2 cut(s) 153, 1253
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 213, 418
Eco81I CCTNAGG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 661
EcoT22I ATGCAT 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 6 cut(s) 66, 498, 978, 1016, 1139, 1294
FalI AAGNNNNNCTT 2 cut(s) 1008, 1040
FaqI GGGAC 2 cut(s) 226, 228
FatI CATG 6 cut(s) 62, 494, 974, 1012, 1135, 1290
FauI CCCGC 2 cut(s) 719, 971
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 2 cut(s) 8, 768
Fnu4HI GCNGC 6 cut(s) 136, 156, 918, 1056, 1106, 1287
Fsp4HI GCNGC 6 cut(s) 136, 156, 918, 1056, 1106, 1287
GluI GCNGC 6 cut(s) 136, 156, 918, 1056, 1106, 1287
HaeIII GGCC 3 cut(s) 135, 155, 1255
HapII CCGG 2 cut(s) 422, 1035
Hin1I GRCGYC 2 cut(s) 5, 255
Hin1II CATG 6 cut(s) 66, 498, 978, 1016, 1139, 1294
HincII GTYRAC 2 cut(s) 9, 262
HindII GTYRAC 2 cut(s) 9, 262
HinfI GANTC 8 cut(s) 10, 241, 266, 322, 379, 883, 1085, 1300
HpaII CCGG 2 cut(s) 422, 1035
HphI GGTGA 3 cut(s) 136, 440, 683
Hpy166II GTNNAC 5 cut(s) 9, 262, 518, 769, 898
Hpy188I TCNGA 6 cut(s) 22, 55, 82, 513, 700, 952
Hpy188III TCNNGA 4 cut(s) 182, 798, 1178, 1304
Hpy8I GTNNAC 5 cut(s) 9, 262, 518, 769, 898
Hpy99I CGWCG 5 cut(s) 10, 34, 200, 257, 260
HpyAV CCTTC 3 cut(s) 48, 186, 451
HpyCH4III ACNGT 3 cut(s) 148, 389, 787
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 8 cut(s) 222, 317, 472, 545, 760, 847, 1012, 1098
HpyF10VI GCNNNNNNNGC 3 cut(s) 599, 1064, 1286
HpyF3I CTNAG 9 cut(s) 52, 72, 79, 129, 236, 302, 951, 1083, 1130
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 2 cut(s) 5, 255
Hsp92II CATG 6 cut(s) 66, 498, 978, 1016, 1139, 1294
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 4 cut(s) 293, 737, 826, 850
LmnI GCTCC 3 cut(s) 23, 607, 925
Lsp1109I GCAGC 3 cut(s) 929, 1042, 1273
LweI GCATC 2 cut(s) 382, 616
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 142, 231, 781
MalI GATC 4 cut(s) 295, 739, 828, 852
MboI GATC 4 cut(s) 293, 737, 826, 850
MboII GAAGA 7 cut(s) 39, 301, 303, 364, 466, 768, 1050
MfeI CAATTG 1 cut(s) 830
MflI RGATCY 2 cut(s) 293, 737
MhlI GDGCHC 3 cut(s) 71, 1069, 1198
MlsI TGGCCA 1 cut(s) 1255
MluCI AATT 9 cut(s) 339, 413, 466, 639, 830, 938, 1116, 1207, 1249
MluNI TGGCCA 1 cut(s) 1255
MlyI GAGTC 4 cut(s) 4, 250, 892, 1094
MmeI TCCRAC 4 cut(s) 706, 947, 974, 1092
Mox20I TGGCCA 1 cut(s) 1255
Mph1103I ATGCAT 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 1020
MscI TGGCCA 1 cut(s) 1255
MseI TTAA 4 cut(s) 579, 908, 971, 1211
MslI CAYNNNNRTG 2 cut(s) 910, 1093
Msp20I TGGCCA 1 cut(s) 1255
MspA1I CMGCKG 1 cut(s) 714
MspI CCGG 2 cut(s) 422, 1035
MspR9I CCNGG 3 cut(s) 422, 423, 663
MunI CAATTG 1 cut(s) 830
Mva1269I GAATGC 3 cut(s) 946, 1145, 1280
MvaI CCWGG 1 cut(s) 663
MvnI CGCG 3 cut(s) 138, 669, 855
MwoI GCNNNNNNNGC 3 cut(s) 599, 1064, 1286
NciI CCSGG 2 cut(s) 422, 423
NdeII GATC 4 cut(s) 293, 737, 826, 850
NlaIII CATG 6 cut(s) 66, 498, 978, 1016, 1139, 1294
NlaIV GGNNCC 4 cut(s) 214, 420, 603, 1030
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 3 cut(s) 142, 231, 781
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 1 cut(s) 978
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 261
PctI GAATGC 3 cut(s) 946, 1145, 1280
PdmI GAANNNNTTC 1 cut(s) 1020
PfeI GAWTC 4 cut(s) 266, 322, 379, 1300
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 6 cut(s) 137, 157, 919, 1057, 1107, 1288
Ple19I CGATCG 1 cut(s) 853
PleI GAGTC 4 cut(s) 4, 249, 891, 1093
PpsI GAGTC 4 cut(s) 4, 249, 891, 1093
PshBI ATTAAT 1 cut(s) 908
Psp6I CCWGG 1 cut(s) 661
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 4 cut(s) 214, 420, 603, 1030
PspPI GGNCC 3 cut(s) 133, 213, 418
PsuI RGATCY 2 cut(s) 293, 737
PsyI GACNNNGTC 1 cut(s) 257
PvuI CGATCG 1 cut(s) 853
RsaI GTAC 2 cut(s) 479, 651
RsaNI GTAC 2 cut(s) 478, 650
RseI CAYNNNNRTG 2 cut(s) 910, 1093
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 4 cut(s) 579, 908, 971, 1211
SatI GCNGC 6 cut(s) 136, 156, 918, 1056, 1106, 1287
Sau3AI GATC 4 cut(s) 293, 737, 826, 850
Sau96I GGNCC 3 cut(s) 133, 213, 418
SchI GAGTC 4 cut(s) 4, 250, 892, 1094
ScrFI CCNGG 3 cut(s) 422, 423, 663
SduI GDGCHC 3 cut(s) 71, 1069, 1198
SfaNI GCATC 2 cut(s) 382, 616
SinI GGWCC 2 cut(s) 213, 418
SmaI CCCGGG 1 cut(s) 423
SmiMI CAYNNNNRTG 2 cut(s) 910, 1093
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 9 cut(s) 339, 413, 466, 639, 830, 938, 1116, 1207, 1249
SsiI CCGC 7 cut(s) 136, 156, 229, 669, 712, 978, 1105
StyD4I CCNGG 3 cut(s) 420, 421, 661
TaaI ACNGT 3 cut(s) 148, 389, 787
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 8, 289, 986
TaqII GACCGA 1 cut(s) 769
TasI AATT 9 cut(s) 339, 413, 466, 639, 830, 938, 1116, 1207, 1249
TatI WGTACW 1 cut(s) 477
TauI GCSGC 3 cut(s) 138, 158, 1108
TfiI GAWTC 4 cut(s) 266, 322, 379, 1300
Tru1I TTAA 4 cut(s) 579, 908, 971, 1211
Tru9I TTAA 4 cut(s) 579, 908, 971, 1211
TscAI CASTG 4 cut(s) 240, 790, 1164, 1318
TseFI GTSAC 3 cut(s) 142, 231, 781
TseI GCWGC 3 cut(s) 917, 1055, 1286
Tsp45I GTSAC 3 cut(s) 142, 231, 781
TspDTI ATGAA 6 cut(s) 381, 467, 552, 738, 1029, 1152
TspMI CCCGGG 1 cut(s) 421
TspRI CASTG 4 cut(s) 240, 790, 1164, 1318
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 213, 418
VspI ATTAAT 1 cut(s) 908
XapI RAATTY 4 cut(s) 339, 466, 938, 1116
XceI RCATGY 1 cut(s) 978
XmaI CCCGGG 1 cut(s) 421
XmiI GTMKAC 2 cut(s) 8, 768
XmnI GAANNNNTTC 1 cut(s) 1020
ZraI GACGTC 1 cut(s) 256
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.