tRNA-specific adenosine deaminase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01760 AT1G01760 AT1G01760 AT1G01760 |
| fragaria_vesca | FvH4_7g13861 |
| malus_domestica | MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1 |
| prunus_persica | Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1 |
| pyrus_communis | pycom01g07990 |
| rosa_chinensis | RchiOBHm_Chr1g0354081 |
| rosa_laevigata | RLG00000028228 |
| rosa_multiflora | Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00301240 |
| rosa_rugosa | Rorug01G0241100 |
| rosa_samantha | Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900 |
| rosa_wichuraiana | Rw1G021980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 8 |
| AccI | GTMKAC | 4 cut(s) | 96, 348, 852, 1154 |
| AccII | CGCG | 2 cut(s) | 135, 291 |
| AciI | CCGC | 6 cut(s) | 133, 153, 289, 639, 1035, 1056 |
| AcoI | YGGCCR | 2 cut(s) | 150, 223 |
| AcsI | RAATTY | 2 cut(s) | 429, 1016 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 116, 274, 518, 752, 1348 |
| AflIII | ACRYGT | 1 cut(s) | 561 |
| AgsI | TTSAA | 9 cut(s) | 179, 317, 503, 737, 818, 845, 1022, 1065, 1336 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 71 |
| AjnI | CCWGG | 2 cut(s) | 126, 745 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1086, 1118 |
| AluBI | AGCT | 6 cut(s) | 664, 777, 824, 929, 964, 998 |
| AluI | AGCT | 6 cut(s) | 664, 777, 824, 929, 964, 998 |
| Alw21I | GWGCWC | 1 cut(s) | 90 |
| Alw26I | GTCTC | 3 cut(s) | 79, 618, 1025 |
| AoxI | GGCC | 3 cut(s) | 130, 150, 223 |
| ApeKI | GCWGC | 2 cut(s) | 777, 1130 |
| ApoI | RAATTY | 2 cut(s) | 429, 1016 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 129, 161, 1218, 1250 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 900, 1098 |
| AspLEI | GCGC | 2 cut(s) | 293, 1130 |
| AspS9I | GGNCC | 3 cut(s) | 130, 303, 508 |
| AsuHPI | GGTGA | 4 cut(s) | 133, 624, 719, 767 |
| AsuII | TTCGAA | 1 cut(s) | 21 |
| AvaII | GGWCC | 2 cut(s) | 303, 508 |
| AxyI | CCTNAGG | 1 cut(s) | 1205 |
| BaeGI | GKGCMC | 1 cut(s) | 1273 |
| BbsI | GAAGAC | 1 cut(s) | 1315 |
| Bbv12I | GWGCWC | 1 cut(s) | 90 |
| BbvI | GCAGC | 2 cut(s) | 764, 1117 |
| BccI | CCATC | 1 cut(s) | 512 |
| BceAI | ACGGC | 4 cut(s) | 13, 210, 262, 1196 |
| BciT130I | CCWGG | 2 cut(s) | 128, 747 |
| BclI | TGATCA | 1 cut(s) | 966 |
| BcoDI | GTCTC | 3 cut(s) | 79, 618, 1025 |
| BfaI | CTAG | 2 cut(s) | 393, 636 |
| BfoI | RGCGCY | 1 cut(s) | 1131 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 246 |
| BisI | GCNGC | 5 cut(s) | 133, 153, 289, 778, 1131 |
| BlsI | GCNGC | 5 cut(s) | 134, 154, 290, 779, 1132 |
| Bme1390I | CCNGG | 2 cut(s) | 128, 747 |
| Bme18I | GGWCC | 2 cut(s) | 303, 508 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 71 |
| BmgT120I | GGNCC | 3 cut(s) | 130, 303, 508 |
| BmiI | GGNNCC | 5 cut(s) | 205, 211, 305, 510, 1108 |
| BmrFI | CCNGG | 2 cut(s) | 128, 747 |
| BmrI | ACTGGG | 1 cut(s) | 70 |
| BmuI | ACTGGG | 1 cut(s) | 70 |
| BpiI | GAAGAC | 1 cut(s) | 1315 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1343, 1375 |
| BpmI | CTGGAG | 2 cut(s) | 33, 677 |
| Bpu10I | CCTNAGC | 1 cut(s) | 236 |
| Bpu14I | TTCGAA | 1 cut(s) | 21 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 1025 |
| BsaJI | CCNNGG | 4 cut(s) | 126, 127, 244, 273 |
| BsaWI | WCCGGW | 1 cut(s) | 206 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 25 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 116, 274, 518, 752, 1348 |
| Bse1I | ACTGG | 2 cut(s) | 65, 660 |
| Bse21I | CCTNAGG | 1 cut(s) | 1205 |
| Bse3DI | GCAATG | 1 cut(s) | 1293 |
| BseBI | CCWGG | 2 cut(s) | 128, 747 |
| BseDI | CCNNGG | 4 cut(s) | 126, 127, 244, 273 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 116, 274, 518, 752, 1348 |
| BseMI | GCAATG | 1 cut(s) | 1293 |
| BseMII | CTCAG | 4 cut(s) | 69, 90, 105, 1020 |
| BseNI | ACTGG | 2 cut(s) | 65, 660 |
| BseRI | GAGGAG | 5 cut(s) | 152, 157, 162, 674, 698 |
| BseSI | GKGCMC | 1 cut(s) | 1273 |
| BseX3I | CGGCCG | 1 cut(s) | 223 |
| BseXI | GCAGC | 2 cut(s) | 764, 1117 |
| Bsh1236I | CGCG | 2 cut(s) | 135, 291 |
| Bsh1285I | CGRYCG | 1 cut(s) | 226 |
| BshFI | GGCC | 3 cut(s) | 132, 152, 225 |
| BsiEI | CGRYCG | 1 cut(s) | 226 |
| BsiHKAI | GWGCWC | 1 cut(s) | 90 |
| BsiSI | CCGG | 1 cut(s) | 207 |
| BslFI | GGGAC | 4 cut(s) | 78, 289, 957, 1186 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 116, 274, 518, 752, 1348 |
| BsmAI | GTCTC | 3 cut(s) | 79, 618, 1025 |
| BsmFI | GGGAC | 4 cut(s) | 78, 289, 957, 1186 |
| BsmI | GAATGC | 2 cut(s) | 1220, 1355 |
| BsnI | GGCC | 3 cut(s) | 132, 152, 225 |
| Bso31I | GGTCTC | 1 cut(s) | 1025 |
| Bsp119I | TTCGAA | 1 cut(s) | 21 |
| Bsp1286I | GDGCHC | 2 cut(s) | 90, 1273 |
| Bsp143I | GATC | 2 cut(s) | 937, 966 |
| BspACI | CCGC | 6 cut(s) | 133, 153, 289, 639, 1035, 1056 |
| BspANI | GGCC | 3 cut(s) | 132, 152, 225 |
| BspCNI | CTCAG | 4 cut(s) | 68, 89, 104, 1021 |
| BspFNI | CGCG | 2 cut(s) | 135, 291 |
| BspLI | GGNNCC | 5 cut(s) | 205, 211, 305, 510, 1108 |
| BspT104I | TTCGAA | 1 cut(s) | 21 |
| BspTNI | GGTCTC | 1 cut(s) | 1025 |
| BsrDI | GCAATG | 1 cut(s) | 1293 |
| BsrI | ACTGG | 2 cut(s) | 65, 660 |
| BssECI | CCNNGG | 4 cut(s) | 126, 127, 244, 273 |
| BssMI | GATC | 2 cut(s) | 937, 966 |
| BssNAI | GTATAC | 1 cut(s) | 853 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst1107I | GTATAC | 1 cut(s) | 853 |
| Bst2UI | CCWGG | 2 cut(s) | 128, 747 |
| Bst4CI | ACNGT | 5 cut(s) | 145, 344, 468, 733, 871 |
| Bst6I | CTCTTC | 1 cut(s) | 180 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1361 |
| BstBI | TTCGAA | 1 cut(s) | 21 |
| BstC8I | GCNNGC | 3 cut(s) | 286, 962, 1144 |
| BstDEI | CTNAG | 7 cut(s) | 55, 76, 91, 111, 236, 1029, 1205 |
| BstDSI | CCRYGG | 1 cut(s) | 244 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 114 |
| BstFNI | CGCG | 2 cut(s) | 135, 291 |
| BstH2I | RGCGCY | 1 cut(s) | 1131 |
| BstHHI | GCGC | 2 cut(s) | 293, 1130 |
| BstKTI | GATC | 2 cut(s) | 940, 969 |
| BstMAI | GTCTC | 3 cut(s) | 79, 618, 1025 |
| BstMBI | GATC | 2 cut(s) | 937, 966 |
| BstMCI | CGRYCG | 1 cut(s) | 226 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 246, 290, 1139, 1336, 1361 |
| BstNI | CCWGG | 2 cut(s) | 128, 747 |
| BstNSI | RCATGY | 3 cut(s) | 565, 1056, 1146 |
| BstSCI | CCNGG | 2 cut(s) | 126, 745 |
| BstSLI | GKGCMC | 1 cut(s) | 1273 |
| BstUI | CGCG | 2 cut(s) | 135, 291 |
| BstV1I | GCAGC | 2 cut(s) | 764, 1117 |
| BstV2I | GAAGAC | 1 cut(s) | 1315 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 990 |
| BstZ17I | GTATAC | 1 cut(s) | 853 |
| BstZI | CGGCCG | 1 cut(s) | 223 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1205 |
| BsuRI | GGCC | 3 cut(s) | 132, 152, 225 |
| BtgI | CCRYGG | 1 cut(s) | 244 |
| BtgZI | GCGATG | 1 cut(s) | 265 |
| Cac8I | GCNNGC | 3 cut(s) | 286, 962, 1144 |
| CfoI | GCGC | 2 cut(s) | 293, 1130 |
| Cfr13I | GGNCC | 3 cut(s) | 130, 303, 508 |
| CseI | GACGC | 2 cut(s) | 208, 719 |
| CviAII | CATG | 7 cut(s) | 562, 935, 1053, 1091, 1143, 1232, 1274 |
| DdeI | CTNAG | 7 cut(s) | 55, 76, 91, 111, 236, 1029, 1205 |
| DpnI | GATC | 2 cut(s) | 939, 968 |
| DpnII | GATC | 2 cut(s) | 937, 966 |
| DriI | GACNNNNNGTC | 1 cut(s) | 71 |
| EaeI | YGGCCR | 2 cut(s) | 150, 223 |
| EagI | CGGCCG | 1 cut(s) | 223 |
| Eam1104I | CTCTTC | 1 cut(s) | 180 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 71 |
| EarI | CTCTTC | 1 cut(s) | 180 |
| EclXI | CGGCCG | 1 cut(s) | 223 |
| Eco31I | GGTCTC | 1 cut(s) | 1025 |
| Eco32I | GATATC | 2 cut(s) | 253, 1245 |
| Eco47I | GGWCC | 2 cut(s) | 303, 508 |
| Eco52I | CGGCCG | 1 cut(s) | 223 |
| Eco81I | CCTNAGG | 1 cut(s) | 1205 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 114 |
| EcoO109I | RGGNCCY | 1 cut(s) | 303 |
| EcoRII | CCWGG | 2 cut(s) | 126, 745 |
| EcoRV | GATATC | 2 cut(s) | 253, 1245 |
| FaeI | CATG | 7 cut(s) | 565, 938, 1056, 1094, 1146, 1235, 1277 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1086, 1118 |
| FaqI | GGGAC | 4 cut(s) | 78, 289, 957, 1186 |
| FatI | CATG | 7 cut(s) | 561, 934, 1052, 1090, 1142, 1231, 1273 |
| FauI | CCCGC | 1 cut(s) | 1049 |
| FbaI | TGATCA | 1 cut(s) | 966 |
| FblI | GTMKAC | 4 cut(s) | 96, 348, 852, 1154 |
| Fnu4HI | GCNGC | 5 cut(s) | 133, 153, 289, 778, 1131 |
| Fsp4HI | GCNGC | 5 cut(s) | 133, 153, 289, 778, 1131 |
| FspBI | CTAG | 2 cut(s) | 393, 636 |
| GlaI | GCGC | 2 cut(s) | 292, 1129 |
| GluI | GCNGC | 5 cut(s) | 133, 153, 289, 778, 1131 |
| GsuI | CTGGAG | 2 cut(s) | 33, 677 |
| HaeII | RGCGCY | 1 cut(s) | 1131 |
| HaeIII | GGCC | 3 cut(s) | 132, 152, 225 |
| HapII | CCGG | 1 cut(s) | 207 |
| HgaI | GACGC | 2 cut(s) | 208, 719 |
| HhaI | GCGC | 2 cut(s) | 293, 1130 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 7 cut(s) | 565, 938, 1056, 1094, 1146, 1235, 1277 |
| Hin6I | GCGC | 2 cut(s) | 291, 1128 |
| HinP1I | GCGC | 2 cut(s) | 291, 1128 |
| HincII | GTYRAC | 2 cut(s) | 259, 349 |
| HindII | GTYRAC | 2 cut(s) | 259, 349 |
| HindIII | AAGCTT | 1 cut(s) | 927 |
| HinfI | GANTC | 4 cut(s) | 53, 263, 671, 1160 |
| HpaII | CCGG | 1 cut(s) | 207 |
| HphI | GGTGA | 4 cut(s) | 133, 624, 719, 767 |
| Hpy166II | GTNNAC | 6 cut(s) | 97, 230, 259, 349, 853, 1155 |
| Hpy188I | TCNGA | 6 cut(s) | 58, 79, 784, 895, 921, 1030 |
| Hpy188III | TCNNGA | 3 cut(s) | 50, 179, 1253 |
| Hpy8I | GTNNAC | 6 cut(s) | 97, 230, 259, 349, 853, 1155 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 34, 224 |
| HpyAV | CCTTC | 5 cut(s) | 51, 166, 317, 538, 844 |
| HpyCH4III | ACNGT | 5 cut(s) | 145, 344, 468, 733, 871 |
| HpyCH4IV | ACGT | 2 cut(s) | 5, 312 |
| HpyCH4V | TGCA | 8 cut(s) | 407, 559, 934, 1090, 1133, 1146, 1173, 1286 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 246, 290, 1139, 1336, 1361 |
| HpyF3I | CTNAG | 7 cut(s) | 55, 76, 91, 111, 236, 1029, 1205 |
| HpySE526I | ACGT | 2 cut(s) | 5, 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 7 cut(s) | 565, 938, 1056, 1094, 1146, 1235, 1277 |
| HspAI | GCGC | 2 cut(s) | 291, 1128 |
| Ksp22I | TGATCA | 1 cut(s) | 966 |
| Kzo9I | GATC | 2 cut(s) | 937, 966 |
| LmnI | GCTCC | 5 cut(s) | 111, 661, 821, 1003, 1139 |
| Lsp1109I | GCAGC | 2 cut(s) | 764, 1117 |
| MaeI | CTAG | 2 cut(s) | 393, 636 |
| MaeII | ACGT | 2 cut(s) | 5, 312 |
| MaeIII | GTNAC | 2 cut(s) | 139, 707 |
| MalI | GATC | 2 cut(s) | 939, 968 |
| MboI | GATC | 2 cut(s) | 937, 966 |
| MboII | GAAGA | 7 cut(s) | 36, 167, 391, 833, 852, 1128, 1320 |
| MhlI | GDGCHC | 2 cut(s) | 90, 1273 |
| MlyI | GAGTC | 2 cut(s) | 47, 680 |
| MmeI | TCCRAC | 5 cut(s) | 530, 779, 790, 853, 1052 |
| MroXI | GAANNNNTTC | 2 cut(s) | 900, 1098 |
| MseI | TTAA | 3 cut(s) | 296, 666, 1260 |
| MslI | CAYNNNNRTG | 2 cut(s) | 939, 1236 |
| MspI | CCGG | 1 cut(s) | 207 |
| MspR9I | CCNGG | 2 cut(s) | 128, 747 |
| Mva1269I | GAATGC | 2 cut(s) | 1220, 1355 |
| MvaI | CCWGG | 2 cut(s) | 128, 747 |
| MvnI | CGCG | 2 cut(s) | 135, 291 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 246, 290, 1139, 1336, 1361 |
| NdeII | GATC | 2 cut(s) | 937, 966 |
| NlaIII | CATG | 7 cut(s) | 565, 938, 1056, 1094, 1146, 1235, 1277 |
| NlaIV | GGNNCC | 5 cut(s) | 205, 211, 305, 510, 1108 |
| NmeAIII | GCCGAG | 1 cut(s) | 298 |
| NmuCI | GTSAC | 2 cut(s) | 139, 707 |
| NspI | RCATGY | 3 cut(s) | 565, 1056, 1146 |
| NspV | TTCGAA | 1 cut(s) | 21 |
| PaeI | GCATGC | 1 cut(s) | 1146 |
| PasI | CCCWGGG | 1 cut(s) | 127 |
| PciI | ACATGT | 1 cut(s) | 561 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 252 |
| PctI | GAATGC | 2 cut(s) | 1220, 1355 |
| PdmI | GAANNNNTTC | 2 cut(s) | 900, 1098 |
| PfeI | GAWTC | 2 cut(s) | 263, 1160 |
| PkrI | GCNGC | 5 cut(s) | 134, 154, 290, 779, 1132 |
| PleI | GAGTC | 2 cut(s) | 47, 679 |
| PpsI | GAGTC | 2 cut(s) | 47, 679 |
| PpuMI | RGGWCCY | 1 cut(s) | 303 |
| PscI | ACATGT | 1 cut(s) | 561 |
| Psp5II | RGGWCCY | 1 cut(s) | 303 |
| Psp6I | CCWGG | 2 cut(s) | 126, 745 |
| PspGI | CCWGG | 2 cut(s) | 126, 745 |
| PspN4I | GGNNCC | 5 cut(s) | 205, 211, 305, 510, 1108 |
| PspPI | GGNCC | 3 cut(s) | 130, 303, 508 |
| PspPPI | RGGWCCY | 1 cut(s) | 303 |
| RseI | CAYNNNNRTG | 2 cut(s) | 939, 1236 |
| SalI | GTCGAC | 1 cut(s) | 347 |
| SaqAI | TTAA | 3 cut(s) | 296, 666, 1260 |
| SatI | GCNGC | 5 cut(s) | 133, 153, 289, 778, 1131 |
| Sau3AI | GATC | 2 cut(s) | 937, 966 |
| Sau96I | GGNCC | 3 cut(s) | 130, 303, 508 |
| SchI | GAGTC | 2 cut(s) | 47, 680 |
| ScrFI | CCNGG | 2 cut(s) | 128, 747 |
| SduI | GDGCHC | 2 cut(s) | 90, 1273 |
| SfuI | TTCGAA | 1 cut(s) | 21 |
| SinI | GGWCC | 2 cut(s) | 303, 508 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 939, 1236 |
| SphI | GCATGC | 1 cut(s) | 1146 |
| SsiI | CCGC | 6 cut(s) | 133, 153, 289, 639, 1035, 1056 |
| SspMI | CTAG | 2 cut(s) | 393, 636 |
| StyD4I | CCNGG | 2 cut(s) | 126, 745 |
| TaaI | ACNGT | 5 cut(s) | 145, 344, 468, 733, 871 |
| TaiI | ACGT | 2 cut(s) | 8, 315 |
| TaqI | TCGA | 3 cut(s) | 21, 348, 1252 |
| TauI | GCSGC | 3 cut(s) | 135, 155, 291 |
| TfiI | GAWTC | 2 cut(s) | 263, 1160 |
| Tru1I | TTAA | 3 cut(s) | 296, 666, 1260 |
| Tru9I | TTAA | 3 cut(s) | 296, 666, 1260 |
| TseFI | GTSAC | 2 cut(s) | 139, 707 |
| TseI | GCWGC | 2 cut(s) | 777, 1130 |
| Tsp45I | GTSAC | 2 cut(s) | 139, 707 |
| TspDTI | ATGAA | 6 cut(s) | 310, 594, 639, 1107, 1227, 1290 |
| TspGWI | ACGGA | 1 cut(s) | 1140 |
| VpaK11BI | GGWCC | 2 cut(s) | 303, 508 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 114 |
| XapI | RAATTY | 2 cut(s) | 429, 1016 |
| XceI | RCATGY | 3 cut(s) | 565, 1056, 1146 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 57 |
| XmiI | GTMKAC | 4 cut(s) | 96, 348, 852, 1154 |
| XmnI | GAANNNNTTC | 2 cut(s) | 900, 1098 |
| XspI | CTAG | 2 cut(s) | 393, 636 |
| ZraI | GACGTC | 1 cut(s) | 6 |