Rh1AG252000

tRNA-specific adenosine deaminase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
46738576 .. 46741911
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG252000.1

Sequence Viewer

Length: 1377 bp
ATGACGTCGCCTCCCTGCTTCGAAACGCCGTCGTTTCGTCCTTCTTCTCCAGACTCAGACTGGGGACACAAAGTCTCAGACAAGGTGCTCTCAGTCTACAACTCGCTCCCTAAGAAAGGGAAGCCCCAGGGCCGCGAAGTCACCGTCTTGGCCGCCTTCCTCCTCTCCTCTCCTCTTCAAGAATTGGAAGTTGTGGCATTGGGAACCGGAACCAAATGCGTCGGCCGTTCACTCCTTAGCCCCCACGGCGATATCGTCAACGATTCCCACGCCGAGGTCATCGCTCGCCGCGCTTTAATCAGGTCCCTTCACGTTCAATTCATTCCTATTTTTGTGAATTACTGTGTCGACTTTATTTTATTAGTTGTTGTAATGTGTGGGTTGCGTGGTGCTAGTTTCTTCTATGCACAGATACAATGTCTTTCTCAAATTTATAGTAGGCAAAGAGATGACAATGGAAGCAAACAGTTGCGAAACGATGATGTGAAAAAGTTTATTTTTGAATTGGACCCTGATGATGGGCAAGGAAAATACACAATGAGGAAGGGTTGGAAATTGCACATGTATATATCGCAACTACCTTGTGGGATTGCTTCGCCAAGTTCATTGATGTCTCCCCCGAAAAATATCTCACCTAGCGGAGTGGGTTCATTACTGGAGGAGCTTAATGAGTCCATAAATGAGGAGGCTTTGATTGAGAATAATGGTGACGCTTCACAACTAATTGGCACGGTTCAAAGAAAGCCTGGTCGTGGTGATACTACATTATCAGTTAGCTGCTCTGACAAGATAGCCCGTTGGAATGTTGTTGGAGTTCAAGGAGCTTTGCTTTCCTTCTTTCTTCAACCTGTATACCTTTCTTCCATTACTGTTGGACAATCCCCTATCAACTCCGAAAAGGTTCTTGTGGCTGATTGTCTGAAACAAGCTTTGCATGATCGTGTCCTACCATTATCAAGCGAGCTGATCAGTCCCTTTCAGCCACTACTCTGGGAAGCTCCAATGCCACCAAAGGAATTTCAACATTCTGAGACCGCTTTGACCACTATAACATGCGGGTATTCAATATGTTGGAATAAGTCTGGTTTGCATGAAGTCATTCTTGGAACCATAGGAAGAAAGCAAGGCGCTGCAAAAGGAGCATGCAATCCGTCTACTGAATCCCCTATATGCAAAAAACGGCTTTTGGAGATTTTCTTGTCCCTAAGGAATGAATGCCCCACCAAAATCCATGTCAATGAGATATCGTATCGAGAAATTAAGGAAAGGGCACATGAATACAATGCAATGTCAAAAGTTCTAAAAAGAAGACATACCTTTAGTAATTGGCTATTGAAGCCCCCAGATTTGGAGGCATTCTCTGCTATGGGAGAGTGA

Protein Analysis

458

Amino Acids

50.67

Weight (kDa)

8.33

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_deamin PF02137 66 - 106 7.7e-14 Adenosine-deaminase (editase) domain
A_deamin PF02137 160 - 447 6e-57 Adenosine-deaminase (editase) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccI GTMKAC 4 cut(s) 96, 348, 852, 1154
AccII CGCG 2 cut(s) 135, 291
AciI CCGC 6 cut(s) 133, 153, 289, 639, 1035, 1056
AcoI YGGCCR 2 cut(s) 150, 223
AcsI RAATTY 2 cut(s) 429, 1016
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 5 cut(s) 116, 274, 518, 752, 1348
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 9 cut(s) 179, 317, 503, 737, 818, 845, 1022, 1065, 1336
AhdI GACNNNNNGTC 1 cut(s) 71
AjnI CCWGG 2 cut(s) 126, 745
AjuI GAANNNNNNNTTGG 2 cut(s) 1086, 1118
AluBI AGCT 6 cut(s) 664, 777, 824, 929, 964, 998
AluI AGCT 6 cut(s) 664, 777, 824, 929, 964, 998
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 3 cut(s) 79, 618, 1025
AoxI GGCC 3 cut(s) 130, 150, 223
ApeKI GCWGC 2 cut(s) 777, 1130
ApoI RAATTY 2 cut(s) 429, 1016
ArsI GACNNNNNNTTYG 4 cut(s) 129, 161, 1218, 1250
Asp700I GAANNNNTTC 2 cut(s) 900, 1098
AspLEI GCGC 2 cut(s) 293, 1130
AspS9I GGNCC 3 cut(s) 130, 303, 508
AsuHPI GGTGA 4 cut(s) 133, 624, 719, 767
AsuII TTCGAA 1 cut(s) 21
AvaII GGWCC 2 cut(s) 303, 508
AxyI CCTNAGG 1 cut(s) 1205
BaeGI GKGCMC 1 cut(s) 1273
BbsI GAAGAC 1 cut(s) 1315
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 764, 1117
BccI CCATC 1 cut(s) 512
BceAI ACGGC 4 cut(s) 13, 210, 262, 1196
BciT130I CCWGG 2 cut(s) 128, 747
BclI TGATCA 1 cut(s) 966
BcoDI GTCTC 3 cut(s) 79, 618, 1025
BfaI CTAG 2 cut(s) 393, 636
BfoI RGCGCY 1 cut(s) 1131
BglI GCCNNNNNGGC 1 cut(s) 246
BisI GCNGC 5 cut(s) 133, 153, 289, 778, 1131
BlsI GCNGC 5 cut(s) 134, 154, 290, 779, 1132
Bme1390I CCNGG 2 cut(s) 128, 747
Bme18I GGWCC 2 cut(s) 303, 508
BmeRI GACNNNNNGTC 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 130, 303, 508
BmiI GGNNCC 5 cut(s) 205, 211, 305, 510, 1108
BmrFI CCNGG 2 cut(s) 128, 747
BmrI ACTGGG 1 cut(s) 70
BmuI ACTGGG 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 1315
BplI GAGNNNNNCTC 2 cut(s) 1343, 1375
BpmI CTGGAG 2 cut(s) 33, 677
Bpu10I CCTNAGC 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1025
BsaJI CCNNGG 4 cut(s) 126, 127, 244, 273
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 274, 518, 752, 1348
Bse1I ACTGG 2 cut(s) 65, 660
Bse21I CCTNAGG 1 cut(s) 1205
Bse3DI GCAATG 1 cut(s) 1293
BseBI CCWGG 2 cut(s) 128, 747
BseDI CCNNGG 4 cut(s) 126, 127, 244, 273
BseLI CCNNNNNNNGG 5 cut(s) 116, 274, 518, 752, 1348
BseMI GCAATG 1 cut(s) 1293
BseMII CTCAG 4 cut(s) 69, 90, 105, 1020
BseNI ACTGG 2 cut(s) 65, 660
BseRI GAGGAG 5 cut(s) 152, 157, 162, 674, 698
BseSI GKGCMC 1 cut(s) 1273
BseX3I CGGCCG 1 cut(s) 223
BseXI GCAGC 2 cut(s) 764, 1117
Bsh1236I CGCG 2 cut(s) 135, 291
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 3 cut(s) 132, 152, 225
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 4 cut(s) 78, 289, 957, 1186
BslI CCNNNNNNNGG 5 cut(s) 116, 274, 518, 752, 1348
BsmAI GTCTC 3 cut(s) 79, 618, 1025
BsmFI GGGAC 4 cut(s) 78, 289, 957, 1186
BsmI GAATGC 2 cut(s) 1220, 1355
BsnI GGCC 3 cut(s) 132, 152, 225
Bso31I GGTCTC 1 cut(s) 1025
Bsp119I TTCGAA 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 90, 1273
Bsp143I GATC 2 cut(s) 937, 966
BspACI CCGC 6 cut(s) 133, 153, 289, 639, 1035, 1056
BspANI GGCC 3 cut(s) 132, 152, 225
BspCNI CTCAG 4 cut(s) 68, 89, 104, 1021
BspFNI CGCG 2 cut(s) 135, 291
BspLI GGNNCC 5 cut(s) 205, 211, 305, 510, 1108
BspT104I TTCGAA 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 1025
BsrDI GCAATG 1 cut(s) 1293
BsrI ACTGG 2 cut(s) 65, 660
BssECI CCNNGG 4 cut(s) 126, 127, 244, 273
BssMI GATC 2 cut(s) 937, 966
BssNAI GTATAC 1 cut(s) 853
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 853
Bst2UI CCWGG 2 cut(s) 128, 747
Bst4CI ACNGT 5 cut(s) 145, 344, 468, 733, 871
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1361
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 3 cut(s) 286, 962, 1144
BstDEI CTNAG 7 cut(s) 55, 76, 91, 111, 236, 1029, 1205
BstDSI CCRYGG 1 cut(s) 244
BstENI CCTNNNNNAGG 1 cut(s) 114
BstFNI CGCG 2 cut(s) 135, 291
BstH2I RGCGCY 1 cut(s) 1131
BstHHI GCGC 2 cut(s) 293, 1130
BstKTI GATC 2 cut(s) 940, 969
BstMAI GTCTC 3 cut(s) 79, 618, 1025
BstMBI GATC 2 cut(s) 937, 966
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 5 cut(s) 246, 290, 1139, 1336, 1361
BstNI CCWGG 2 cut(s) 128, 747
BstNSI RCATGY 3 cut(s) 565, 1056, 1146
BstSCI CCNGG 2 cut(s) 126, 745
BstSLI GKGCMC 1 cut(s) 1273
BstUI CGCG 2 cut(s) 135, 291
BstV1I GCAGC 2 cut(s) 764, 1117
BstV2I GAAGAC 1 cut(s) 1315
BstXI CCANNNNNNTGG 1 cut(s) 990
BstZ17I GTATAC 1 cut(s) 853
BstZI CGGCCG 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 1205
BsuRI GGCC 3 cut(s) 132, 152, 225
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 286, 962, 1144
CfoI GCGC 2 cut(s) 293, 1130
Cfr13I GGNCC 3 cut(s) 130, 303, 508
CseI GACGC 2 cut(s) 208, 719
CviAII CATG 7 cut(s) 562, 935, 1053, 1091, 1143, 1232, 1274
DdeI CTNAG 7 cut(s) 55, 76, 91, 111, 236, 1029, 1205
DpnI GATC 2 cut(s) 939, 968
DpnII GATC 2 cut(s) 937, 966
DriI GACNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 2 cut(s) 150, 223
EagI CGGCCG 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 180
Eam1105I GACNNNNNGTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 1025
Eco32I GATATC 2 cut(s) 253, 1245
Eco47I GGWCC 2 cut(s) 303, 508
Eco52I CGGCCG 1 cut(s) 223
Eco81I CCTNAGG 1 cut(s) 1205
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 303
EcoRII CCWGG 2 cut(s) 126, 745
EcoRV GATATC 2 cut(s) 253, 1245
FaeI CATG 7 cut(s) 565, 938, 1056, 1094, 1146, 1235, 1277
FalI AAGNNNNNCTT 2 cut(s) 1086, 1118
FaqI GGGAC 4 cut(s) 78, 289, 957, 1186
FatI CATG 7 cut(s) 561, 934, 1052, 1090, 1142, 1231, 1273
FauI CCCGC 1 cut(s) 1049
FbaI TGATCA 1 cut(s) 966
FblI GTMKAC 4 cut(s) 96, 348, 852, 1154
Fnu4HI GCNGC 5 cut(s) 133, 153, 289, 778, 1131
Fsp4HI GCNGC 5 cut(s) 133, 153, 289, 778, 1131
FspBI CTAG 2 cut(s) 393, 636
GlaI GCGC 2 cut(s) 292, 1129
GluI GCNGC 5 cut(s) 133, 153, 289, 778, 1131
GsuI CTGGAG 2 cut(s) 33, 677
HaeII RGCGCY 1 cut(s) 1131
HaeIII GGCC 3 cut(s) 132, 152, 225
HapII CCGG 1 cut(s) 207
HgaI GACGC 2 cut(s) 208, 719
HhaI GCGC 2 cut(s) 293, 1130
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 565, 938, 1056, 1094, 1146, 1235, 1277
Hin6I GCGC 2 cut(s) 291, 1128
HinP1I GCGC 2 cut(s) 291, 1128
HincII GTYRAC 2 cut(s) 259, 349
HindII GTYRAC 2 cut(s) 259, 349
HindIII AAGCTT 1 cut(s) 927
HinfI GANTC 4 cut(s) 53, 263, 671, 1160
HpaII CCGG 1 cut(s) 207
HphI GGTGA 4 cut(s) 133, 624, 719, 767
Hpy166II GTNNAC 6 cut(s) 97, 230, 259, 349, 853, 1155
Hpy188I TCNGA 6 cut(s) 58, 79, 784, 895, 921, 1030
Hpy188III TCNNGA 3 cut(s) 50, 179, 1253
Hpy8I GTNNAC 6 cut(s) 97, 230, 259, 349, 853, 1155
Hpy99I CGWCG 3 cut(s) 10, 34, 224
HpyAV CCTTC 5 cut(s) 51, 166, 317, 538, 844
HpyCH4III ACNGT 5 cut(s) 145, 344, 468, 733, 871
HpyCH4IV ACGT 2 cut(s) 5, 312
HpyCH4V TGCA 8 cut(s) 407, 559, 934, 1090, 1133, 1146, 1173, 1286
HpyF10VI GCNNNNNNNGC 5 cut(s) 246, 290, 1139, 1336, 1361
HpyF3I CTNAG 7 cut(s) 55, 76, 91, 111, 236, 1029, 1205
HpySE526I ACGT 2 cut(s) 5, 312
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 565, 938, 1056, 1094, 1146, 1235, 1277
HspAI GCGC 2 cut(s) 291, 1128
Ksp22I TGATCA 1 cut(s) 966
Kzo9I GATC 2 cut(s) 937, 966
LmnI GCTCC 5 cut(s) 111, 661, 821, 1003, 1139
Lsp1109I GCAGC 2 cut(s) 764, 1117
MaeI CTAG 2 cut(s) 393, 636
MaeII ACGT 2 cut(s) 5, 312
MaeIII GTNAC 2 cut(s) 139, 707
MalI GATC 2 cut(s) 939, 968
MboI GATC 2 cut(s) 937, 966
MboII GAAGA 7 cut(s) 36, 167, 391, 833, 852, 1128, 1320
MhlI GDGCHC 2 cut(s) 90, 1273
MlyI GAGTC 2 cut(s) 47, 680
MmeI TCCRAC 5 cut(s) 530, 779, 790, 853, 1052
MroXI GAANNNNTTC 2 cut(s) 900, 1098
MseI TTAA 3 cut(s) 296, 666, 1260
MslI CAYNNNNRTG 2 cut(s) 939, 1236
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 128, 747
Mva1269I GAATGC 2 cut(s) 1220, 1355
MvaI CCWGG 2 cut(s) 128, 747
MvnI CGCG 2 cut(s) 135, 291
MwoI GCNNNNNNNGC 5 cut(s) 246, 290, 1139, 1336, 1361
NdeII GATC 2 cut(s) 937, 966
NlaIII CATG 7 cut(s) 565, 938, 1056, 1094, 1146, 1235, 1277
NlaIV GGNNCC 5 cut(s) 205, 211, 305, 510, 1108
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 2 cut(s) 139, 707
NspI RCATGY 3 cut(s) 565, 1056, 1146
NspV TTCGAA 1 cut(s) 21
PaeI GCATGC 1 cut(s) 1146
PasI CCCWGGG 1 cut(s) 127
PciI ACATGT 1 cut(s) 561
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 2 cut(s) 1220, 1355
PdmI GAANNNNTTC 2 cut(s) 900, 1098
PfeI GAWTC 2 cut(s) 263, 1160
PkrI GCNGC 5 cut(s) 134, 154, 290, 779, 1132
PleI GAGTC 2 cut(s) 47, 679
PpsI GAGTC 2 cut(s) 47, 679
PpuMI RGGWCCY 1 cut(s) 303
PscI ACATGT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 126, 745
PspGI CCWGG 2 cut(s) 126, 745
PspN4I GGNNCC 5 cut(s) 205, 211, 305, 510, 1108
PspPI GGNCC 3 cut(s) 130, 303, 508
PspPPI RGGWCCY 1 cut(s) 303
RseI CAYNNNNRTG 2 cut(s) 939, 1236
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 3 cut(s) 296, 666, 1260
SatI GCNGC 5 cut(s) 133, 153, 289, 778, 1131
Sau3AI GATC 2 cut(s) 937, 966
Sau96I GGNCC 3 cut(s) 130, 303, 508
SchI GAGTC 2 cut(s) 47, 680
ScrFI CCNGG 2 cut(s) 128, 747
SduI GDGCHC 2 cut(s) 90, 1273
SfuI TTCGAA 1 cut(s) 21
SinI GGWCC 2 cut(s) 303, 508
SmiMI CAYNNNNRTG 2 cut(s) 939, 1236
SphI GCATGC 1 cut(s) 1146
SsiI CCGC 6 cut(s) 133, 153, 289, 639, 1035, 1056
SspMI CTAG 2 cut(s) 393, 636
StyD4I CCNGG 2 cut(s) 126, 745
TaaI ACNGT 5 cut(s) 145, 344, 468, 733, 871
TaiI ACGT 2 cut(s) 8, 315
TaqI TCGA 3 cut(s) 21, 348, 1252
TauI GCSGC 3 cut(s) 135, 155, 291
TfiI GAWTC 2 cut(s) 263, 1160
Tru1I TTAA 3 cut(s) 296, 666, 1260
Tru9I TTAA 3 cut(s) 296, 666, 1260
TseFI GTSAC 2 cut(s) 139, 707
TseI GCWGC 2 cut(s) 777, 1130
Tsp45I GTSAC 2 cut(s) 139, 707
TspDTI ATGAA 6 cut(s) 310, 594, 639, 1107, 1227, 1290
TspGWI ACGGA 1 cut(s) 1140
VpaK11BI GGWCC 2 cut(s) 303, 508
XagI CCTNNNNNAGG 1 cut(s) 114
XapI RAATTY 2 cut(s) 429, 1016
XceI RCATGY 3 cut(s) 565, 1056, 1146
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XmiI GTMKAC 4 cut(s) 96, 348, 852, 1154
XmnI GAANNNNTTC 2 cut(s) 900, 1098
XspI CTAG 2 cut(s) 393, 636
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.