Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005289

Physical Location & Seq

Genomic Coordinates Reverse (-)

20343522 .. 20344851

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1140100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCAAGTAGGAAAGCGACTGTTGGAGATTTTCTTGTCCCTAAGACATGAATGCCCTACCAAAATCCCTGTGAATGAGATTTCGTACCAGGAAATCAAGGAAAGGGTGCAGGAATACAATTTGACCTCAAAATTTCTAAAAACAAGACATCCCTTTGGTAATTGGCCATTGAAACCGCCACATTCTGAGGCATTCTCAGCCATGGGGCGTAATATAGATGGAGTACGTTGTGTTAACCAACTGAGGAGCGGCCATTGCATCACCCGTCGCTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004000 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

A_deamin

Protein Analysis

93

Amino Acids

10.78

Weight (kDa)

9.69

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01760 AT1G01760 AT1G01760 AT1G01760
fragaria_vesca	FvH4_7g13861
malus_domestica	MD01G1055100.v1.1 MD07G1140100.v1.1 MD07G1140200.v1.1
prunus_persica	Prupe.2G164500_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G164800_v2.0.a1 Prupe.2G165000_v2.0.a1
pyrus_communis	pycom01g07990
rosa_chinensis	RchiOBHm_Chr1g0354081
rosa_laevigata	RLG00000028228
rosa_multiflora	Rmu_co8163372.1_g000001 Rmu_sc0004632.1_g000008 Rmu_sc0006777.1_g000001 Rmu_sc0020013.1_g000003
rosa_roxburghii	Rroxscaffold_4G00301240
rosa_rugosa	Rorug01G0241100
rosa_samantha	Rh1AG252000 Rh1BG223800 Rh1BG223900 Rh1CG236400 Rh1DG250800 Rh1DG250900
rosa_wichuraiana	Rw1G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	249
AciI	CCGC	2 cut(s)	176, 249
AcoI	YGGCCR	2 cut(s)	164, 250
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	2 cut(s)	86, 225
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	87
AoxI	GGCC	2 cut(s)	164, 250
ApeKI	GCWGC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	250, 271
BlsI	GCNGC	2 cut(s)	251, 272
Bme1390I	CCNGG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BsaJI	CCNNGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	3 cut(s)	177, 210, 233
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	166, 252
BslFI	GGGAC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	2 cut(s)	56, 191
BsnI	GGCC	2 cut(s)	166, 252
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	2 cut(s)	176, 249
BspANI	GGCC	2 cut(s)	166, 252
BspCNI	CTCAG	3 cut(s)	178, 209, 234
BsrBI	CCGCTC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	21
BstDEI	CTNAG	4 cut(s)	41, 186, 196, 242
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 255
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	166, 252
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	85, 224
CviAII	CATG	2 cut(s)	47, 202
CviJI	RGCY	3 cut(s)	166, 200, 252
CviKI_1	RGCY	3 cut(s)	166, 200, 252
CviQI	GTAC	2 cut(s)	85, 224
DdeI	CTNAG	4 cut(s)	41, 186, 196, 242
EaeI	YGGCCR	2 cut(s)	164, 250
Eco130I	CCWWGG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	50, 205
FaiI	YATR	3 cut(s)	48, 203, 215
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	46, 201
Fnu4HI	GCNGC	2 cut(s)	250, 271
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	250, 271
GluI	GCNGC	2 cut(s)	250, 271
HaeIII	GGCC	2 cut(s)	166, 252
Hin1II	CATG	2 cut(s)	50, 205
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HpaI	GTTAAC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	4, 109, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 255
HpyF3I	CTNAG	4 cut(s)	41, 186, 196, 242
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	50, 205
KspAI	GTTAAC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	4 cut(s)	74, 81, 95, 101
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	226
MbiI	CCGCTC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	3 cut(s)	118, 131, 160
MluNI	TGGCCA	1 cut(s)	166
MnlI	CCTC	3 cut(s)	136, 181, 237
Mox20I	TGGCCA	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	166
MseI	TTAA	2 cut(s)	234, 277
Msp20I	TGGCCA	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	2 cut(s)	56, 191
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	197, 255
NcoI	CCATGG	1 cut(s)	201
NlaIII	CATG	2 cut(s)	50, 205
PctI	GAATGC	2 cut(s)	56, 191
PkrI	GCNGC	2 cut(s)	251, 272
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
RsaI	GTAC	2 cut(s)	86, 225
RsaNI	GTAC	2 cut(s)	85, 224
SaqAI	TTAA	2 cut(s)	234, 277
SatI	GCNGC	2 cut(s)	250, 271
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	2 cut(s)	128, 229
SfaNI	GCATC	1 cut(s)	267
Sse9I	AATT	3 cut(s)	118, 131, 160
SsiI	CCGC	2 cut(s)	176, 249
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	1 cut(s)	229
TasI	AATT	3 cut(s)	118, 131, 160
TauI	GCSGC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	234, 277
Tru9I	TTAA	2 cut(s)	234, 277
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	63
XapI	RAATTY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.