AT1G02816

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003757
Physical Location & Seq
Forward (+)
621453 .. 623054
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02816.1

Sequence Viewer

Length: 501 bp
ATGACTCTGCTTCCGATTTCAATCTTCTTCTTCTTTTTATTTTGCATTCCTTCGCCATTAATCGCCGCCGCTAACGATGACGATATACCGACGGCGTACACTCTCCTCCAAAGCTACAACTTTCCCGTCGGGATTCTTCCTAAAGGAGTGGTGTCATATGATTTAGATAAATCTACTGGTCAATTCCACGCGTATTTCAACAAATCGTGCAGTTTCGCTCTTCAAGGCTCTTACCAATTGGATTACAAATCGACAATCTCTGGATACATATCGGAGAACAAGATCACGAAGCTTACCGGCGTGAAGGTGAAAGTTCTCTTCTTGTGGCTCAACATCGTTGAGGTTATTAGGAACGGAGACGAACTCGAGTTCTCCGTTGGGATCACATCGGCGAACTTCGAGATCGATGAGTTTTACGAGTCGCCACAGTGTGGTTGCGGATTTGATTGCAAAACGAAGACGAAGACTTTGGGAAGAAACCCTTTTGTTTCTTCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

166

Amino Acids

18.5

Weight (kDa)

5.08

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 32 - 138 3.8e-36 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 431
AccII CGCG 1 cut(s) 191
AciI CCGC 3 cut(s) 66, 69, 438
AclWI GGATC 1 cut(s) 389
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 431
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 3 cut(s) 21, 199, 224
AluBI AGCT 2 cut(s) 114, 292
AluI AGCT 2 cut(s) 114, 292
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AseI ATTAAT 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 365
BbsI GAAGAC 2 cut(s) 464, 470
BceAI ACGGC 1 cut(s) 108
BciVI GTATCC 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 351
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 2 cut(s) 66, 69
BlsI GCNGC 2 cut(s) 67, 70
BmeT110I CYCGRG 1 cut(s) 365
BpiI GAAGAC 2 cut(s) 464, 470
BplI GAGNNNNNCTC 2 cut(s) 348, 380
Bsa29I ATCGAT 1 cut(s) 405
BsaBI GATNNNNATC 2 cut(s) 20, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 181
Bse8I GATNNNNATC 2 cut(s) 20, 268
BseCI ATCGAT 1 cut(s) 405
BseJI GATNNNNATC 2 cut(s) 20, 268
BseLI CCNNNNNNNGG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 229
Bsh1236I CGCG 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 351
BsmBI CGTCTC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 365
Bsp143I GATC 3 cut(s) 282, 381, 402
BspACI CCGC 3 cut(s) 66, 69, 438
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 1 cut(s) 191
BspPI GGATC 1 cut(s) 389
BspQI GCTCTTC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 296
BssMI GATC 3 cut(s) 282, 381, 402
Bst4CI ACNGT 1 cut(s) 429
Bst6I CTCTTC 2 cut(s) 225, 323
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 3 cut(s) 285, 384, 405
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 3 cut(s) 282, 381, 402
BstUI CGCG 1 cut(s) 191
BstV2I GAAGAC 2 cut(s) 464, 470
Bsu15I ATCGAT 1 cut(s) 405
BsuI GTATCC 1 cut(s) 257
BsuTUI ATCGAT 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 405
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 4 cut(s) 114, 228, 292, 328
CviKI_1 RGCY 4 cut(s) 114, 228, 292, 328
CviQI GTAC 1 cut(s) 97
DpnI GATC 3 cut(s) 284, 383, 404
DpnII GATC 3 cut(s) 282, 381, 402
DraIII CACNNNGTG 1 cut(s) 431
Eam1104I CTCTTC 2 cut(s) 225, 323
EarI CTCTTC 2 cut(s) 225, 323
Eco88I CYCGRG 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 351
FaiI YATR 4 cut(s) 86, 157, 159, 269
FalI AAGNNNNNCTT 2 cut(s) 466, 498
FauNDI CATATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 66, 69
Fsp4HI GCNGC 2 cut(s) 66, 69
GluI GCNGC 2 cut(s) 66, 69
HapII CCGG 1 cut(s) 297
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 3 cut(s) 4, 133, 419
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 15, 274
Hpy188III TCNNGA 4 cut(s) 130, 261, 286, 400
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 2 cut(s) 94, 131
HpyAV CCTTC 2 cut(s) 60, 298
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4V TGCA 3 cut(s) 45, 210, 450
Kzo9I GATC 3 cut(s) 282, 381, 402
LguI GCTCTTC 1 cut(s) 225
LpnPI CCDG 3 cut(s) 162, 246, 310
MalI GATC 3 cut(s) 284, 383, 404
MboI GATC 3 cut(s) 282, 381, 402
MfeI CAATTG 1 cut(s) 236
MluCI AATT 2 cut(s) 182, 236
MluI ACGCGT 1 cut(s) 189
MlyI GAGTC 1 cut(s) 428
MnlI CCTC 2 cut(s) 116, 334
MseI TTAA 2 cut(s) 59, 499
MspI CCGG 1 cut(s) 297
MunI CAATTG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 45
MvnI CGCG 1 cut(s) 191
NdeI CATATG 1 cut(s) 157
NdeII GATC 3 cut(s) 282, 381, 402
PaeR7I CTCGAG 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 133
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 2 cut(s) 67, 70
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 59
PspXI VCTCGAGB 1 cut(s) 365
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 59, 499
SatI GCNGC 2 cut(s) 66, 69
Sau3AI GATC 3 cut(s) 282, 381, 402
SchI GAGTC 1 cut(s) 428
SetI ASST 4 cut(s) 116, 294, 309, 345
Sfr274I CTCGAG 1 cut(s) 365
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 2 cut(s) 182, 236
SsiI CCGC 3 cut(s) 66, 69, 438
TaaI ACNGT 1 cut(s) 429
TaqI TCGA 4 cut(s) 251, 366, 399, 405
TasI AATT 2 cut(s) 182, 236
TauI GCSGC 2 cut(s) 68, 71
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 59, 499
Tru9I TTAA 2 cut(s) 59, 499
TscAI CASTG 1 cut(s) 434
TspGWI ACGGA 2 cut(s) 364, 369
TspRI CASTG 1 cut(s) 434
Van91I CCANNNNNTGG 1 cut(s) 431
VspI ATTAAT 1 cut(s) 59
XhoI CTCGAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.