RLG00000011891

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003757
Physical Location & Seq
Forward (+)
13567183 .. 13573965
6783 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011891

Sequence Viewer

Length: 867 bp
ATGTCTCTCCCAGCCATTCTCGCCGTTCTCGTCTTCCTTTCACCGTTCTCCTTCGCCGTCGCCGATGACGATACCCGGTCGGCCTACGACGTCATCCAGGACTTCAACTTCCCGGTGGGGATTCTCCCCAAGGGCGTTACCAGCTACGACCTCGACCGGAGCACCGGCAAGTGGGCCGCCTACTTCGACGGCGCGTGTAGCTTCGCTCTCGAAGGCTCGTACCAGCTCAAGTACAAGTCCACCATCACCGGCACTATCTCCGAGAACAGGCTCAAGGACCTGACCGGAGTCAGCGTCAAGGTCTTGTTCCTGTGGCTTAATATCGTTGAGGTGTCTCGGAGCGGCGACGACCTGGATTTCTCGGTGGGGATCGCTTCGGCGTCTTTTGCAATTGACAATTTCTACGAGTGTCCTCAGTGCGGGTGTGGATTGAATTGCAGCCCTGCGCCGCCTCAAATAGATGAAAGTGTTTTGAGTTTGGTGCTGATGGAAAGACTTGTCACATATTGCTTTGTTTATTGGAAGTTTGAGGCTTTGGAAAGACTGTGCTGTGGCGGCGTGGCTTGGACCTTGACAAGCTTGCAAGCCTGTGGTGAGTCTGCGTCTTCTGATCGTTGGGAGGCTCTAGCGGTGGCAGACTGGTGGTTTCGGCGTTCTTTTCCCTTGATCGACGGCGGCGACTGGCAGGACGGCGTGAGGTGGGGCTTCGACGGGCTCGTTTTGGATAGGAGTTTTCCGATCTGGTATGGGTGCTTCGGAACCATGCGGGGAGGAGGTGTTTTGGGGGAGGTGGTGCTTTCTTGTCGGCGTGCTGGCGATGATGGCGAGGTGGATGGTAGTCCGACGTCTACTCGTGGCGGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

289

Amino Acids

31.4

Weight (kDa)

4.39

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 28 - 134 8.8e-34 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 93, 848
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 848
AccII CGCG 1 cut(s) 194
AciI CCGC 9 cut(s) 177, 342, 420, 449, 555, 629, 675, 766, 858
AclWI GGATC 1 cut(s) 377
AcyI GRCGYC 3 cut(s) 90, 380, 845
AfaI GTAC 2 cut(s) 221, 233
AfiI CCNNNNNNNGG 3 cut(s) 171, 267, 419
AgsI TTSAA 2 cut(s) 106, 433
AjnI CCWGG 2 cut(s) 96, 351
AluBI AGCT 4 cut(s) 144, 201, 226, 579
AluI AGCT 4 cut(s) 144, 201, 226, 579
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 2 cut(s) 9, 339
AlwI GGATC 1 cut(s) 377
AoxI GGCC 2 cut(s) 81, 174
ApeKI GCWGC 1 cut(s) 438
AspLEI GCGC 2 cut(s) 194, 448
AspS9I GGNCC 3 cut(s) 174, 277, 567
AsuC2I CCSGG 2 cut(s) 76, 113
AsuHPI GGTGA 3 cut(s) 33, 238, 605
AvaII GGWCC 2 cut(s) 277, 567
BanII GRGCYC 1 cut(s) 717
BarI GAAGNNNNNNTAC 2 cut(s) 737, 769
BauI CACGAG 1 cut(s) 852
BbsI GAAGAC 2 cut(s) 25, 597
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 450
BccI CCATC 4 cut(s) 251, 481, 815, 827
BceAI ACGGC 5 cut(s) 8, 41, 205, 688, 706
BciT130I CCWGG 2 cut(s) 98, 353
BcnI CCSGG 2 cut(s) 76, 113
BcoDI GTCTC 2 cut(s) 9, 339
BfaI CTAG 2 cut(s) 626, 865
BisI GCNGC 6 cut(s) 177, 343, 439, 449, 556, 676
BlsI GCNGC 6 cut(s) 178, 344, 440, 450, 557, 677
Bme1390I CCNGG 4 cut(s) 76, 98, 113, 353
Bme18I GGWCC 2 cut(s) 277, 567
BmgT120I GGNCC 3 cut(s) 174, 277, 567
BmiI GGNNCC 1 cut(s) 760
BmrFI CCNGG 4 cut(s) 76, 98, 113, 353
BoxI GACNNNNGTC 1 cut(s) 287
BpiI GAAGAC 2 cut(s) 25, 597
BpuEI CTTGAG 2 cut(s) 212, 257
BpuMI CCSGG 2 cut(s) 76, 113
BsaHI GRCGYC 3 cut(s) 90, 380, 845
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 2 cut(s) 156, 284
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 762, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 267, 419
Bse118I RCCGGY 2 cut(s) 164, 248
Bse1I ACTGG 2 cut(s) 644, 686
BseBI CCWGG 2 cut(s) 98, 353
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 93, 838
BseLI CCNNNNNNNGG 3 cut(s) 171, 267, 419
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 2 cut(s) 644, 686
BseRI GAGGAG 1 cut(s) 786
BseXI GCAGC 1 cut(s) 450
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 194
Bsh1285I CGRYCG 2 cut(s) 80, 157
BshFI GGCC 2 cut(s) 83, 176
BsiEI CGRYCG 2 cut(s) 80, 157
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 6 cut(s) 76, 113, 157, 165, 249, 285
BslI CCNNNNNNNGG 3 cut(s) 171, 267, 419
BsmAI GTCTC 2 cut(s) 9, 339
BsnI GGCC 2 cut(s) 83, 176
Bsp1286I GDGCHC 2 cut(s) 164, 717
Bsp143I GATC 4 cut(s) 369, 610, 666, 738
BspACI CCGC 9 cut(s) 177, 342, 420, 449, 555, 629, 675, 766, 858
BspANI GGCC 2 cut(s) 83, 176
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 760
BspPI GGATC 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 342
BsrFI RCCGGY 2 cut(s) 164, 248
BsrI ACTGG 2 cut(s) 644, 686
BssAI RCCGGY 2 cut(s) 164, 248
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 4 cut(s) 369, 610, 666, 738
BssNI GRCGYC 3 cut(s) 90, 380, 845
BssSI CACGAG 1 cut(s) 852
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 852
Bst2UI CCWGG 2 cut(s) 98, 353
Bst4CI ACNGT 2 cut(s) 45, 546
BstACI GRCGYC 3 cut(s) 90, 380, 845
BstC8I GCNNGC 4 cut(s) 581, 585, 810, 814
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 93, 838
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 2 cut(s) 194, 448
BstKTI GATC 4 cut(s) 372, 613, 669, 741
BstMAI GTCTC 2 cut(s) 9, 339
BstMBI GATC 4 cut(s) 369, 610, 666, 738
BstMCI CGRYCG 2 cut(s) 80, 157
BstMWI GCNNNNNNNGC 6 cut(s) 20, 141, 198, 386, 555, 822
BstNI CCWGG 2 cut(s) 98, 353
BstPAI GACNNNNGTC 1 cut(s) 287
BstSCI CCNGG 4 cut(s) 74, 96, 111, 351
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 450
BstV2I GAAGAC 2 cut(s) 25, 597
BsuRI GGCC 2 cut(s) 83, 176
BtgZI GCGATG 1 cut(s) 831
BtsCI GGATG 2 cut(s) 93, 838
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 4 cut(s) 581, 585, 810, 814
CfoI GCGC 2 cut(s) 194, 448
Cfr10I RCCGGY 2 cut(s) 164, 248
Cfr13I GGNCC 3 cut(s) 174, 277, 567
CseI GACGC 3 cut(s) 283, 369, 591
Csp6I GTAC 2 cut(s) 220, 232
CviAII CATG 1 cut(s) 763
CviQI GTAC 2 cut(s) 220, 232
DdeI CTNAG 1 cut(s) 414
DpnI GATC 4 cut(s) 371, 612, 668, 740
DpnII GATC 4 cut(s) 369, 610, 666, 738
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 277, 567
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 96, 351
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 766
FaiI YATR 3 cut(s) 505, 747, 764
FatI CATG 1 cut(s) 762
FauI CCCGC 2 cut(s) 413, 759
FblI GTMKAC 1 cut(s) 848
Fnu4HI GCNGC 6 cut(s) 177, 343, 439, 449, 556, 676
FokI GGATG 2 cut(s) 80, 845
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 6 cut(s) 177, 343, 439, 449, 556, 676
FspBI CTAG 2 cut(s) 626, 865
GlaI GCGC 2 cut(s) 193, 447
GluI GCNGC 6 cut(s) 177, 343, 439, 449, 556, 676
GsaI CCCAGC 1 cut(s) 14
HaeIII GGCC 2 cut(s) 83, 176
HapII CCGG 6 cut(s) 76, 113, 157, 165, 249, 285
HgaI GACGC 3 cut(s) 283, 369, 591
HhaI GCGC 2 cut(s) 194, 448
Hin1I GRCGYC 3 cut(s) 90, 380, 845
Hin1II CATG 1 cut(s) 766
Hin6I GCGC 2 cut(s) 192, 446
HinP1I GCGC 2 cut(s) 192, 446
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 3 cut(s) 121, 288, 596
HpaII CCGG 6 cut(s) 76, 113, 157, 165, 249, 285
HphI GGTGA 3 cut(s) 33, 238, 605
Hpy166II GTNNAC 2 cut(s) 240, 849
Hpy188I TCNGA 6 cut(s) 262, 339, 610, 738, 758, 843
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 240, 849
Hpy99I CGWCG 7 cut(s) 62, 92, 191, 350, 674, 713, 847
HpyAV CCTTC 2 cut(s) 61, 206
HpyCH4III ACNGT 2 cut(s) 45, 546
HpyCH4IV ACGT 2 cut(s) 90, 845
HpyCH4V TGCA 3 cut(s) 389, 438, 583
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 141, 198, 386, 555, 822
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 2 cut(s) 90, 845
Hsp92I GRCGYC 3 cut(s) 90, 380, 845
Hsp92II CATG 1 cut(s) 766
HspAI GCGC 2 cut(s) 192, 446
Kzo9I GATC 4 cut(s) 369, 610, 666, 738
LmnI GCTCC 2 cut(s) 159, 339
Lsp1109I GCAGC 1 cut(s) 450
MaeI CTAG 2 cut(s) 626, 865
MaeII ACGT 2 cut(s) 90, 845
MaeIII GTNAC 2 cut(s) 136, 499
MalI GATC 4 cut(s) 371, 612, 668, 740
MbiI CCGCTC 1 cut(s) 342
MboI GATC 4 cut(s) 369, 610, 666, 738
MboII GAAGA 2 cut(s) 25, 597
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 2 cut(s) 164, 717
MluCI AATT 3 cut(s) 390, 397, 433
MlyI GAGTC 2 cut(s) 297, 605
MmeI TCCRAC 1 cut(s) 866
MseI TTAA 1 cut(s) 318
MspI CCGG 6 cut(s) 76, 113, 157, 165, 249, 285
MspR9I CCNGG 4 cut(s) 76, 98, 113, 353
MunI CAATTG 1 cut(s) 390
MvaI CCWGG 2 cut(s) 98, 353
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 6 cut(s) 20, 141, 198, 386, 555, 822
NciI CCSGG 2 cut(s) 76, 113
NdeII GATC 4 cut(s) 369, 610, 666, 738
NlaIII CATG 1 cut(s) 766
NlaIV GGNNCC 1 cut(s) 760
NmuCI GTSAC 1 cut(s) 499
PcsI WCGNNNNNNNCGW 5 cut(s) 27, 60, 66, 675, 714
PfeI GAWTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 6 cut(s) 178, 344, 440, 450, 557, 677
PleI GAGTC 2 cut(s) 296, 604
PpsI GAGTC 2 cut(s) 296, 604
PpuMI RGGWCCY 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 96, 351
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 2 cut(s) 96, 351
PspN4I GGNNCC 1 cut(s) 760
PspPI GGNCC 3 cut(s) 174, 277, 567
PspPPI RGGWCCY 1 cut(s) 277
RsaI GTAC 2 cut(s) 221, 233
RsaNI GTAC 2 cut(s) 220, 232
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 6 cut(s) 177, 343, 439, 449, 556, 676
Sau3AI GATC 4 cut(s) 369, 610, 666, 738
Sau96I GGNCC 3 cut(s) 174, 277, 567
SchI GAGTC 2 cut(s) 297, 605
ScrFI CCNGG 4 cut(s) 76, 98, 113, 353
SduI GDGCHC 2 cut(s) 164, 717
SinI GGWCC 2 cut(s) 277, 567
SmlI CTYRAG 2 cut(s) 227, 272
SmoI CTYRAG 2 cut(s) 227, 272
Sse9I AATT 3 cut(s) 390, 397, 433
SsiI CCGC 9 cut(s) 177, 342, 420, 449, 555, 629, 675, 766, 858
SspMI CTAG 2 cut(s) 626, 865
StyD4I CCNGG 4 cut(s) 74, 96, 111, 351
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 45, 546
TaiI ACGT 2 cut(s) 93, 848
TaqI TCGA 5 cut(s) 153, 186, 210, 669, 708
TasI AATT 3 cut(s) 390, 397, 433
TatI WGTACW 1 cut(s) 231
TauI GCSGC 5 cut(s) 179, 345, 451, 558, 678
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 438
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 1 cut(s) 477
TspRI CASTG 1 cut(s) 422
VpaK11BI GGWCC 2 cut(s) 277, 567
XmiI GTMKAC 1 cut(s) 848
XspI CTAG 2 cut(s) 626, 865
ZraI GACGTC 2 cut(s) 91, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.