Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003757

Physical Location & Seq

Genomic Coordinates Reverse (-)

22139137 .. 22139987

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G263200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

AAGTCACCACGTCCATTGCCGAGCCAACAGCGCGACTACCTAAAAGAATACAAACTCCTCCATACGTCGCCGTTTTTGAAGAACTATTATTGTCGTATTCGGACTGTAAACGTCGTCTCCACCGCTGTCAGTCAAAGCCAAACCCACTCTCCACCAACAACAATTCCCGGAAATACCAAAAGCAACAAAAAAATTGGGGAGAGAGAAGCGAGAGAAAATCCGAAAGCCCAAACCATGTCGTCTCTCGCAGCCATTCTCGCCCTCTTCGTCATCCTATCCCCATTCGCTACGTCATCAACGGCCGCCGCCGGCTACGATGACTCACGGTCGGCGTACGATATCATCCAAGACTTCGACTTCCCGATGGGTCTGCTCCCGAAGGGCGTCACTGGTTACGAACTAGACCGAAGCAACGGTCAATTCCGAGCTTATTTGAACGGTTCCTGCAGTTTCGCATTGGAAGGGTCGTACCAGCTCAAGTATAAGTCCACCATCAGTGGCTCTATCTCCAAGAACAAGCTCTCTGGGCTCACTGGGGTTAGCGTCAAGGTCTTGTTCTTGTGGCTCAACATCGTCGAGGTCACTCGGAGCGGCGACAATCTTGAATTCTCTGTGGGGATCGCTTCTGCTGCGTTTCCGATTGACAACTTTTACGAGTGCCCACAGTGCGGGTGTGGATTGGATTGCGTCAATGGGCAAGTAAGGAAAATTAAAATGAACCCTCTTGTTTCTTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

247

Amino Acids

26.92

Weight (kDa)

9.16

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02816 AT4G02370
fragaria_vesca	FvH4_2g25870 FvH4_2g25880
malus_domestica	MD03G1290000.v1.1 MD03G1290100.v1.1 MD03G1290200.v1.1 MD03G1290300.v1.1 MD11G1308200.v1.1 MD11G1308300.v1.1
prunus_persica	Prupe.8G263200_v2.0.a1 Prupe.8G263300_v2.0.a1
pyrus_communis	pycom03g22950 pycom11g26940 pycom11g26950
rosa_chinensis	RchiOBHm_Chr6g0294201 RchiOBHm_Chr6g0294211
rosa_laevigata	RLG00000011890 RLG00000011891
rosa_multiflora	Rmu_co8452345.1_g000001 Rmu_sc0002462.1_g000001 Rmu_sc0002462.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173550
rosa_rugosa	Rorug06G0242400 Rorug06G0242500
rosa_samantha	Rh6AG354600 Rh6AG354700 Rh6BG361500 Rh6BG361600 Rh6CG368800 Rh6CG368900 Rh6DG355600 Rh6DG355700
rosa_wichuraiana	Rw6G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	591
AccII	CGCG	1 cut(s)	33
AciI	CCGC	5 cut(s)	123, 303, 306, 591, 669
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	2 cut(s)	335, 470
AfiI	CCNNNNNNNGG	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	79, 436, 605, 735
AhdI	GACNNNNNGTC	1 cut(s)	325
AjiI	CACGTC	1 cut(s)	11
AluBI	AGCT	3 cut(s)	428, 475, 520
AluI	AGCT	3 cut(s)	428, 475, 520
Alw26I	GTCTC	2 cut(s)	121, 246
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	248, 629
ApoI	RAATTY	1 cut(s)	605
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
AspLEI	GCGC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	260, 616
BccI	CCATC	2 cut(s)	358, 500
BceAI	ACGGC	2 cut(s)	55, 315
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	121, 246
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	445
BisI	GCNGC	5 cut(s)	249, 303, 306, 592, 630
BlsI	GCNGC	5 cut(s)	250, 304, 307, 593, 631
Bme1390I	CCNGG	1 cut(s)	168
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmgBI	CACGTC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	543
BmuI	ACTGGG	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	384
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	394, 538
Bse3DI	GCAATG	1 cut(s)	14
BseGI	GGATG	2 cut(s)	270, 342
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMI	GCAATG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	394, 538
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	662
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	260, 616
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	2 cut(s)	303, 329
BshFI	GGCC	1 cut(s)	302
BsiEI	CGRYCG	2 cut(s)	303, 329
BsiSI	CCGG	2 cut(s)	168, 309
BsiWI	CGTACG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	2 cut(s)	121, 246
BsmBI	CGTCTC	2 cut(s)	121, 246
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	531, 662
Bsp143I	GATC	1 cut(s)	618
BspACI	CCGC	5 cut(s)	123, 303, 306, 591, 669
BspANI	GGCC	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	449
BspPI	GGATC	1 cut(s)	626
BsrBI	CCGCTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	394, 538
BssAI	RCCGGY	1 cut(s)	308
BssMI	GATC	1 cut(s)	618
BssNI	GRCGYC	1 cut(s)	384
Bst4CI	ACNGT	5 cut(s)	106, 327, 416, 440, 666
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	270, 342
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	621
BstMAI	GTCTC	2 cut(s)	121, 246
BstMBI	GATC	1 cut(s)	618
BstMCI	CGRYCG	2 cut(s)	303, 329
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 257, 526, 629, 666
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	445
BstSLI	GKGCMC	1 cut(s)	662
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	260, 616
BstZI	CGGCCG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	302
BtrI	CACGTC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	270, 342
BtsIMutI	CAGTG	4 cut(s)	387, 502, 531, 671
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	308
CseI	GACGC	3 cut(s)	373, 532, 676
Csp6I	GTAC	2 cut(s)	334, 469
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	1 cut(s)	235
CviQI	GTAC	2 cut(s)	334, 469
DpnI	GATC	1 cut(s)	620
DpnII	GATC	1 cut(s)	618
DriI	GACNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	300
EagI	CGGCCG	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	269
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	531
Eco32I	GATATC	1 cut(s)	340
Eco52I	CGGCCG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	605
EcoRV	GATATC	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	531
Esp3I	CGTCTC	2 cut(s)	121, 246
FaeI	CATG	1 cut(s)	238
FaiI	YATR	3 cut(s)	63, 236, 483
FatI	CATG	1 cut(s)	234
FauI	CCCGC	1 cut(s)	662
Fnu4HI	GCNGC	5 cut(s)	249, 303, 306, 592, 630
FokI	GGATG	2 cut(s)	257, 329
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	5 cut(s)	249, 303, 306, 592, 630
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	5 cut(s)	249, 303, 306, 592, 630
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	2 cut(s)	168, 309
HgaI	GACGC	3 cut(s)	373, 532, 676
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	2 cut(s)	168, 309
Hpy166II	GTNNAC	2 cut(s)	109, 489
Hpy188I	TCNGA	5 cut(s)	102, 222, 425, 588, 639
Hpy188III	TCNNGA	3 cut(s)	361, 376, 602
Hpy8I	GTNNAC	2 cut(s)	109, 489
Hpy99I	CGWCG	3 cut(s)	70, 116, 578
HpyAV	CCTTC	2 cut(s)	373, 455
HpyCH4III	ACNGT	5 cut(s)	106, 327, 416, 440, 666
HpyCH4IV	ACGT	4 cut(s)	10, 65, 111, 290
HpyCH4V	TGCA	1 cut(s)	447
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 257, 526, 629, 666
HpySE526I	ACGT	4 cut(s)	10, 65, 111, 290
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	31
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	618
LmnI	GCTCC	2 cut(s)	378, 588
LpnPI	CCDG	7 cut(s)	181, 322, 375, 457, 485, 510, 519
Lsp1109I	GCAGC	2 cut(s)	260, 616
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	4 cut(s)	10, 65, 111, 290
MaeIII	GTNAC	4 cut(s)	3, 385, 392, 580
MalI	GATC	1 cut(s)	620
MbiI	CCGCTC	1 cut(s)	591
MboI	GATC	1 cut(s)	618
MboII	GAAGA	3 cut(s)	91, 256, 723
MhlI	GDGCHC	2 cut(s)	531, 662
MluCI	AATT	6 cut(s)	162, 192, 419, 605, 708, 735
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	4 cut(s)	68, 272, 571, 732
MroNI	GCCGGC	1 cut(s)	308
MseI	TTAA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	2 cut(s)	168, 309
MspR9I	CCNGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	5 cut(s)	30, 257, 526, 629, 666
NaeI	GCCGGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	1 cut(s)	618
NgoMIV	GCCGGC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	442
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	3 cut(s)	3, 385, 580
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdiI	GCCGGC	1 cut(s)	310
Pfl23II	CGTACG	1 cut(s)	333
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	5 cut(s)	250, 304, 307, 593, 631
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PspLI	CGTACG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	335, 470
RsaNI	GTAC	2 cut(s)	334, 469
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	5 cut(s)	249, 303, 306, 592, 630
Sau3AI	GATC	1 cut(s)	618
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	531, 662
SfcI	CTRYAG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	6 cut(s)	162, 192, 419, 605, 708, 735
SsiI	CCGC	5 cut(s)	123, 303, 306, 591, 669
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	5 cut(s)	106, 327, 416, 440, 666
TaiI	ACGT	4 cut(s)	13, 68, 114, 293
TaqI	TCGA	2 cut(s)	354, 576
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	6 cut(s)	162, 192, 419, 605, 708, 735
TauI	GCSGC	3 cut(s)	305, 308, 594
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TscAI	CASTG	4 cut(s)	394, 502, 538, 671
TseFI	GTSAC	3 cut(s)	3, 385, 580
TseI	GCWGC	2 cut(s)	248, 629
Tsp45I	GTSAC	3 cut(s)	3, 385, 580
TspDTI	ATGAA	1 cut(s)	731
TspRI	CASTG	4 cut(s)	394, 502, 538, 671
XapI	RAATTY	1 cut(s)	605
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.