RLG00000011890

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003757
Physical Location & Seq
Forward (+)
13565598 .. 13566095
498 bp
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UTR
Exon/CDS
Intron
RLM00000011890

Sequence Viewer

Length: 498 bp
ATGGCAACACTAGGCCTAATACTCTTCTTTCTGGTCTCCTTCTCAATCTCAACCCCAGCTGCTTCTGTCAAGGACAAGCTGACCGCTTACGAAGCTCTCGAAGAGTATGACTTCCCAGTAGGCATTCTTCCCAAAGGCGTACTAAGCTACGAGCTAGACAATTCCACAGGTAAATTCTCAGTCTATTTGAATGGCTCTTGTACCTTTTCAATAGATTCATATGAGCTGAAGTACAAGTCCACCATAACGGGTGTGATAACCAAAGACAAGATCTCGAGCTTGAGTGGTATCACGGTCAAGGTGCTGTTCCTGTGGTTGAGCATTGTCACAGTGGTTCGAGACGAAGATGAGATCCAGTTCTCTGTTGGGATCGCCTCCGCGGACTTTGCCGTCAGTAATTTCGTGGAGAGTCCGACGTGTGGATGTGGATTTGATTGTGTCAATGTGGATGGAAGGAAGATCAAGTTTGATGATCAGTCACTAGTGTCCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

166

Amino Acids

17.88

Weight (kDa)

4.5

Isoelectric Point (pI)

24.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 29 - 134 2.3e-35 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AccII CGCG 1 cut(s) 380
AciI CCGC 3 cut(s) 84, 378, 380
AclWI GGATC 2 cut(s) 346, 377
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 3 cut(s) 141, 202, 233
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 2 cut(s) 190, 210
AhlI ACTAGT 1 cut(s) 481
AjiI CACGTC 1 cut(s) 417
AluBI AGCT 7 cut(s) 59, 79, 95, 147, 154, 226, 279
AluI AGCT 7 cut(s) 59, 79, 95, 147, 154, 226, 279
Alw26I GTCTC 2 cut(s) 40, 333
AlwI GGATC 2 cut(s) 346, 377
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 274
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 374
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 40, 333
BcuI ACTAGT 1 cut(s) 481
BfaI CTAG 3 cut(s) 11, 155, 482
BglII AGATCT 1 cut(s) 270
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 417
BmrI ACTGGG 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 301
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 116, 355
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 2 cut(s) 428, 454
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 116, 355
BseXI GCAGC 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 40, 333
BsmBI CGTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 1 cut(s) 15
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 274
Bsp143I GATC 5 cut(s) 270, 351, 369, 459, 472
BspACI CCGC 3 cut(s) 84, 378, 380
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 1 cut(s) 380
BspPI GGATC 2 cut(s) 346, 377
BspTNI GGTCTC 1 cut(s) 40
BsrI ACTGG 2 cut(s) 116, 355
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 5 cut(s) 270, 351, 369, 459, 472
Bst4CI ACNGT 2 cut(s) 295, 331
Bst6I CTCTTC 2 cut(s) 29, 96
BstDEI CTNAG 2 cut(s) 143, 178
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 428, 454
BstFNI CGCG 1 cut(s) 380
BstKTI GATC 5 cut(s) 273, 354, 372, 462, 475
BstMAI GTCTC 2 cut(s) 40, 333
BstMBI GATC 5 cut(s) 270, 351, 369, 459, 472
BstMWI GCNNNNNNNGC 3 cut(s) 92, 144, 386
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 2 cut(s) 270, 351
BstYI RGATCY 2 cut(s) 270, 351
BsuRI GGCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 378
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 2 cut(s) 428, 454
BtsIMutI CAGTG 1 cut(s) 336
Cfr42I CCGCGG 1 cut(s) 381
Csp6I GTAC 3 cut(s) 140, 201, 232
CviJI RGCY 9 cut(s) 15, 59, 79, 95, 147, 154, 195, 226, 279
CviKI_1 RGCY 9 cut(s) 15, 59, 79, 95, 147, 154, 195, 226, 279
CviQI GTAC 3 cut(s) 140, 201, 232
DdeI CTNAG 2 cut(s) 143, 178
DpnI GATC 5 cut(s) 272, 353, 371, 461, 474
DpnII GATC 5 cut(s) 270, 351, 369, 459, 472
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
Eam1104I CTCTTC 2 cut(s) 29, 96
EarI CTCTTC 2 cut(s) 29, 96
Eco147I AGGCCT 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 333
FaiI YATR 4 cut(s) 108, 220, 222, 245
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 435, 461
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 3 cut(s) 11, 155, 482
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 15
HinfI GANTC 2 cut(s) 215, 409
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 414
Hpy188III TCNNGA 3 cut(s) 98, 274, 338
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 49, 447
HpyCH4III ACNGT 2 cut(s) 295, 331
HpyCH4IV ACGT 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 144, 386
HpyF3I CTNAG 2 cut(s) 143, 178
HpySE526I ACGT 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 472
KspI CCGCGG 1 cut(s) 381
Kzo9I GATC 5 cut(s) 270, 351, 369, 459, 472
LpnPI CCDG 6 cut(s) 17, 69, 129, 153, 323, 368
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 3 cut(s) 11, 155, 482
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 325, 477
MalI GATC 5 cut(s) 272, 353, 371, 461, 474
MboI GATC 5 cut(s) 270, 351, 369, 459, 472
MboII GAAGA 5 cut(s) 16, 113, 119, 356, 469
MflI RGATCY 2 cut(s) 270, 351
MluCI AATT 3 cut(s) 160, 173, 397
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 1 cut(s) 385
MseI TTAA 1 cut(s) 496
MspA1I CMGCKG 2 cut(s) 59, 380
Mva1269I GAATGC 1 cut(s) 123
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 92, 144, 386
NdeI CATATG 1 cut(s) 220
NdeII GATC 5 cut(s) 270, 351, 369, 459, 472
NmuCI GTSAC 2 cut(s) 325, 477
PaeR7I CTCGAG 1 cut(s) 274
PceI AGGCCT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 55
PsuI RGATCY 2 cut(s) 270, 351
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 3 cut(s) 141, 202, 233
RsaNI GTAC 3 cut(s) 140, 201, 232
SacII CCGCGG 1 cut(s) 381
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 5 cut(s) 270, 351, 369, 459, 472
SchI GAGTC 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 274
Sfr303I CCGCGG 1 cut(s) 381
SgrBI CCGCGG 1 cut(s) 381
SlaI CTCGAG 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 274, 280
SmoI CTYRAG 2 cut(s) 274, 280
SpeI ACTAGT 1 cut(s) 481
Sse9I AATT 3 cut(s) 160, 173, 397
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 3 cut(s) 84, 378, 380
SspMI CTAG 3 cut(s) 11, 155, 482
StuI AGGCCT 1 cut(s) 15
TaaI ACNGT 2 cut(s) 295, 331
TaiI ACGT 1 cut(s) 419
TaqI TCGA 3 cut(s) 99, 275, 337
TasI AATT 3 cut(s) 160, 173, 397
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 2 cut(s) 325, 477
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 2 cut(s) 325, 477
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 1 cut(s) 336
XapI RAATTY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 274
XspI CTAG 3 cut(s) 11, 155, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.