AT4G02370

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003757
Physical Location & Seq
Forward (+)
1042235 .. 1043283
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02370.1

Sequence Viewer

Length: 504 bp
ATGTCTCGTCTCCCGATTTTAATCGCTTCGTGTCTCTTCCTCTCTTCACTCACCGCCGCCGTCGTCACCGCCGCCGAATCCGATACTCCGACGGCTTATTCACTCCTCCAAAGCTACAACTTCCCCGTCGGAATCCTTCCAAAAGGAGTCGTAGCTTATGATTTAGACACAACAACAGGCAAATTCCATGCGTATTTCAACGATTCATGTAGCTTCAATCTTGTTGGTTCTTACCAATTGAATTACAAATCAACAATCAGTGGTTACATCTCCGAGAACAAGCTCAAGAAATTGACTGGTGTTAAAGTCAAAGTTTTGTTCTTGTGGCTTAACATCGTCGAGGTTATTAGAAACGGTGACGAGATGGAGTTTTCCGTTGGGATCACATCGGCGAATTTCGCGATCCAAGAGTTTTTGGAATCGCCTCAGTGTGGTTGTGGCTTTGAGTGCAAGGATTCGAAATTGGACATGATTGAGAGAATCCCTTTTCTTTCTTCGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

167

Amino Acids

18.36

Weight (kDa)

5.13

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 32 - 138 1.4e-34 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 401
AciI CCGC 4 cut(s) 54, 57, 69, 72
AclWI GGATC 2 cut(s) 389, 397
AcsI RAATTY 2 cut(s) 182, 394
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 3 cut(s) 199, 217, 241
AluBI AGCT 4 cut(s) 114, 155, 213, 283
AluI AGCT 4 cut(s) 114, 155, 213, 283
Alw26I GTCTC 3 cut(s) 9, 14, 38
AlwI GGATC 2 cut(s) 389, 397
ApoI RAATTY 2 cut(s) 182, 394
AsuHPI GGTGA 3 cut(s) 43, 58, 368
AsuII TTCGAA 1 cut(s) 458
BccI CCATC 1 cut(s) 358
BceAI ACGGC 2 cut(s) 44, 108
BcoDI GTCTC 3 cut(s) 9, 14, 38
BisI GCNGC 2 cut(s) 57, 72
BlsI GCNGC 2 cut(s) 58, 73
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 269
BsaBI GATNNNNATC 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMII CTCAG 1 cut(s) 440
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 3 cut(s) 9, 14, 38
BsmBI CGTCTC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 458
Bsp143I GATC 2 cut(s) 381, 402
Bsp68I TCGCGA 1 cut(s) 401
BspACI CCGC 4 cut(s) 54, 57, 69, 72
BspCNI CTCAG 1 cut(s) 439
BspFNI CGCG 1 cut(s) 401
BspPI GGATC 2 cut(s) 389, 397
BspT104I TTCGAA 1 cut(s) 458
BsrI ACTGG 1 cut(s) 301
BssMI GATC 2 cut(s) 381, 402
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 2 cut(s) 41, 49
BstBI TTCGAA 1 cut(s) 458
BstDEI CTNAG 1 cut(s) 426
BstFNI CGCG 1 cut(s) 401
BstKTI GATC 2 cut(s) 384, 405
BstMAI GTCTC 3 cut(s) 9, 14, 38
BstMBI GATC 2 cut(s) 381, 402
BstMWI GCNNNNNNNGC 2 cut(s) 398, 447
BstUI CGCG 1 cut(s) 401
BtsIMutI CAGTG 2 cut(s) 265, 434
BtuMI TCGCGA 1 cut(s) 401
CviAII CATG 3 cut(s) 188, 207, 469
CviJI RGCY 7 cut(s) 95, 114, 155, 213, 283, 328, 441
CviKI_1 RGCY 7 cut(s) 95, 114, 155, 213, 283, 328, 441
DdeI CTNAG 1 cut(s) 426
DpnI GATC 2 cut(s) 383, 404
DpnII GATC 2 cut(s) 381, 402
Eam1104I CTCTTC 2 cut(s) 41, 49
EarI CTCTTC 2 cut(s) 41, 49
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 3 cut(s) 191, 210, 472
FaiI YATR 4 cut(s) 159, 189, 208, 470
FatI CATG 3 cut(s) 187, 206, 468
Fnu4HI GCNGC 2 cut(s) 57, 72
Fsp4HI GCNGC 2 cut(s) 57, 72
GluI GCNGC 2 cut(s) 57, 72
Hin1II CATG 3 cut(s) 191, 210, 472
HinfI GANTC 7 cut(s) 77, 132, 147, 203, 419, 455, 480
HphI GGTGA 3 cut(s) 43, 58, 368
Hpy188I TCNGA 4 cut(s) 82, 90, 131, 274
Hpy188III TCNNGA 4 cut(s) 13, 286, 400, 501
Hpy99I CGWCG 4 cut(s) 65, 94, 131, 341
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 447
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 3 cut(s) 191, 210, 472
Kzo9I GATC 2 cut(s) 381, 402
LpnPI CCDG 2 cut(s) 162, 282
MaeIII GTNAC 3 cut(s) 64, 263, 356
MalI GATC 2 cut(s) 383, 404
MboI GATC 2 cut(s) 381, 402
MboII GAAGA 3 cut(s) 28, 36, 486
MfeI CAATTG 1 cut(s) 236
MluCI AATT 6 cut(s) 182, 236, 241, 290, 394, 461
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 2 cut(s) 109, 113
MnlI CCTC 4 cut(s) 50, 116, 334, 435
MseI TTAA 3 cut(s) 20, 303, 330
MunI CAATTG 1 cut(s) 236
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 398, 447
NdeII GATC 2 cut(s) 381, 402
NlaIII CATG 3 cut(s) 191, 210, 472
NmuCI GTSAC 2 cut(s) 64, 356
NruI TCGCGA 1 cut(s) 401
NspV TTCGAA 1 cut(s) 458
PfeI GAWTC 6 cut(s) 77, 132, 203, 419, 455, 480
PkrI GCNGC 2 cut(s) 58, 73
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
RruI TCGCGA 1 cut(s) 401
SaqAI TTAA 3 cut(s) 20, 303, 330
SatI GCNGC 2 cut(s) 57, 72
Sau3AI GATC 2 cut(s) 381, 402
SchI GAGTC 1 cut(s) 156
SetI ASST 5 cut(s) 116, 157, 215, 285, 345
SfuI TTCGAA 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 6 cut(s) 182, 236, 241, 290, 394, 461
SsiI CCGC 4 cut(s) 54, 57, 69, 72
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 339, 458
TasI AATT 6 cut(s) 182, 236, 241, 290, 394, 461
TauI GCSGC 2 cut(s) 59, 74
TfiI GAWTC 6 cut(s) 77, 132, 203, 419, 455, 480
Tru1I TTAA 3 cut(s) 20, 303, 330
Tru9I TTAA 3 cut(s) 20, 303, 330
TscAI CASTG 2 cut(s) 265, 434
TseFI GTSAC 2 cut(s) 64, 356
Tsp45I GTSAC 2 cut(s) 64, 356
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 364
TspRI CASTG 2 cut(s) 265, 434
XapI RAATTY 2 cut(s) 182, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.