FvH4_2g25880

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003757
Physical Location & Seq
Reverse (-)
20892448 .. 20892948
501 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25880.t1

Sequence Viewer

Length: 501 bp
ATGGCAACAGTACCATGCCTAATACTCTTCTTTCTGGTCTCCTTTTCCATCTCAACCCCATCTGCATCTGTCAAGGACGAGTTGACAGCTTACGAAGCACTCGAAGAGTATGACTTCCCAGTTGGCATCCTTCCCAAAGGCGTGCTAAGCTACGAGCTAGACAATTCCACAGGTGAATTCTCAGTCTACTTGAATGGCTCTTGTACCTTTTCTATTGATTCATATGAGCTCAAGTACAAGTCCACCATAACCGGTGTGATCACCAACGACAAGATCTCGAGCTTGAGTGGTATCAAGGTCAAGGTGCTGTTCCTATGGTTGAGCATTGTCACAGTTGTTCGAGACGACGATGAGATCGAGTTCTCTGTTGGTATCGCCTCCGCGGACTTCGCGGTCAGTAATTTTGTGGAGAGCCCGACGTGCGGATGTGGGTTTGATTGTGTCAATGTGGATGGAAGGAAGATCAAGTTTGATGATCAGTCACAACTGTCCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

167

Amino Acids

18.06

Weight (kDa)

4.2

Isoelectric Point (pI)

28.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 30 - 135 1.8e-35 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 186
AccII CGCG 2 cut(s) 383, 392
AciI CCGC 4 cut(s) 381, 383, 392, 423
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 3 cut(s) 12, 205, 236
AfiI CCNNNNNNNGG 1 cut(s) 422
AgeI ACCGGT 1 cut(s) 251
AgsI TTSAA 1 cut(s) 193
AjiI CACGTC 1 cut(s) 420
AluBI AGCT 5 cut(s) 89, 150, 157, 229, 282
AluI AGCT 5 cut(s) 89, 150, 157, 229, 282
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 43, 336
Ama87I CYCGRG 1 cut(s) 277
ApoI RAATTY 1 cut(s) 176
AsiGI ACCGGT 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 185, 253
AvaI CYCGRG 1 cut(s) 277
BanII GRGCYC 2 cut(s) 231, 416
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 3 cut(s) 56, 67, 446
BclI TGATCA 2 cut(s) 258, 475
BcoDI GTCTC 2 cut(s) 43, 336
BfaI CTAG 1 cut(s) 158
BglII AGATCT 1 cut(s) 273
BlpI GCTNAGC 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 277
BmgBI CACGTC 1 cut(s) 420
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 74, 135
BmuI ACTGGG 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 215, 304
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 3 cut(s) 126, 431, 457
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 119
Bsh1236I CGCG 2 cut(s) 383, 392
BshTI ACCGGT 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 2 cut(s) 43, 336
BsmBI CGTCTC 1 cut(s) 336
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 231, 416
Bsp143I GATC 5 cut(s) 258, 273, 354, 462, 475
Bsp1720I GCTNAGC 1 cut(s) 146
BspACI CCGC 4 cut(s) 381, 383, 392, 423
BspCNI CTCAG 1 cut(s) 194
BspFNI CGCG 2 cut(s) 383, 392
BspTNI GGTCTC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 5 cut(s) 258, 273, 354, 462, 475
Bst4CI ACNGT 3 cut(s) 10, 334, 489
Bst6I CTCTTC 2 cut(s) 32, 99
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 146, 181
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 3 cut(s) 126, 431, 457
BstFNI CGCG 2 cut(s) 383, 392
BstKTI GATC 5 cut(s) 261, 276, 357, 465, 478
BstMAI GTCTC 2 cut(s) 43, 336
BstMBI GATC 5 cut(s) 258, 273, 354, 462, 475
BstMWI GCNNNNNNNGC 4 cut(s) 95, 147, 389, 420
BstUI CGCG 2 cut(s) 383, 392
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 381
BtrI CACGTC 1 cut(s) 420
BtsCI GGATG 3 cut(s) 126, 431, 457
Cac8I GCNNGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 251
Cfr42I CCGCGG 1 cut(s) 384
Csp6I GTAC 3 cut(s) 11, 204, 235
CspAI ACCGGT 1 cut(s) 251
CviAII CATG 1 cut(s) 15
CviJI RGCY 7 cut(s) 89, 150, 157, 198, 229, 282, 414
CviKI_1 RGCY 7 cut(s) 89, 150, 157, 198, 229, 282, 414
CviQI GTAC 3 cut(s) 11, 204, 235
DdeI CTNAG 2 cut(s) 146, 181
DpnI GATC 5 cut(s) 260, 275, 356, 464, 477
DpnII GATC 5 cut(s) 258, 273, 354, 462, 475
DrdI GACNNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 392
Eam1104I CTCTTC 2 cut(s) 32, 99
EarI CTCTTC 2 cut(s) 32, 99
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 2 cut(s) 231, 416
Eco31I GGTCTC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 176
EcoT38I GRGCYC 2 cut(s) 231, 416
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 1 cut(s) 18
FaiI YATR 6 cut(s) 16, 111, 223, 225, 248, 316
FatI CATG 1 cut(s) 14
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 2 cut(s) 258, 475
FblI GTMKAC 1 cut(s) 186
FokI GGATG 3 cut(s) 113, 438, 464
FriOI GRGCYC 2 cut(s) 231, 416
FspBI CTAG 1 cut(s) 158
HapII CCGG 1 cut(s) 252
Hin1II CATG 1 cut(s) 18
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 252
HphI GGTGA 2 cut(s) 185, 253
Hpy166II GTNNAC 3 cut(s) 84, 187, 243
Hpy188III TCNNGA 2 cut(s) 277, 341
Hpy8I GTNNAC 3 cut(s) 84, 187, 243
Hpy99I CGWCG 2 cut(s) 350, 421
HpyAV CCTTC 2 cut(s) 140, 450
HpyCH4III ACNGT 3 cut(s) 10, 334, 489
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 147, 389, 420
HpyF3I CTNAG 2 cut(s) 146, 181
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 1 cut(s) 18
Ksp22I TGATCA 2 cut(s) 258, 475
KspI CCGCGG 1 cut(s) 384
Kzo9I GATC 5 cut(s) 258, 273, 354, 462, 475
LpnPI CCDG 4 cut(s) 20, 132, 156, 265
LweI GCATC 2 cut(s) 74, 135
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 328, 480
MalI GATC 5 cut(s) 260, 275, 356, 464, 477
MboI GATC 5 cut(s) 258, 273, 354, 462, 475
MboII GAAGA 3 cut(s) 19, 116, 472
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 2 cut(s) 231, 416
MluCI AATT 3 cut(s) 163, 176, 400
MnlI CCTC 1 cut(s) 388
MseI TTAA 1 cut(s) 499
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 252
MvnI CGCG 2 cut(s) 383, 392
MwoI GCNNNNNNNGC 4 cut(s) 95, 147, 389, 420
NdeI CATATG 1 cut(s) 223
NdeII GATC 5 cut(s) 258, 273, 354, 462, 475
NlaIII CATG 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 328, 480
PaeR7I CTCGAG 1 cut(s) 277
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 354
PfeI GAWTC 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 3 cut(s) 12, 205, 236
RsaNI GTAC 3 cut(s) 11, 204, 235
SacI GAGCTC 1 cut(s) 231
SacII CCGCGG 1 cut(s) 384
SaqAI TTAA 1 cut(s) 499
Sau3AI GATC 5 cut(s) 258, 273, 354, 462, 475
SduI GDGCHC 2 cut(s) 231, 416
SfaNI GCATC 2 cut(s) 74, 135
Sfr274I CTCGAG 1 cut(s) 277
Sfr303I CCGCGG 1 cut(s) 384
SgrBI CCGCGG 1 cut(s) 384
SlaI CTCGAG 1 cut(s) 277
SmlI CTYRAG 3 cut(s) 230, 277, 283
SmoI CTYRAG 3 cut(s) 230, 277, 283
Sse9I AATT 3 cut(s) 163, 176, 400
SsiI CCGC 4 cut(s) 381, 383, 392, 423
SspMI CTAG 1 cut(s) 158
SstI GAGCTC 1 cut(s) 231
TaaI ACNGT 3 cut(s) 10, 334, 489
TaiI ACGT 1 cut(s) 422
TaqI TCGA 4 cut(s) 102, 278, 340, 357
TasI AATT 3 cut(s) 163, 176, 400
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 499
Tru9I TTAA 1 cut(s) 499
TseFI GTSAC 2 cut(s) 328, 480
Tsp45I GTSAC 2 cut(s) 328, 480
TspDTI ATGAA 1 cut(s) 210
XapI RAATTY 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.