Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003757

Physical Location & Seq

Genomic Coordinates Reverse (-)

22140825 .. 22141382

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G263300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCTCCAAAGGAAACACTGCTCTGGCTATCTCTCTTCCTTCTGGTCTCCTTCTCAATCCCATCTGCATCTGTCAACGACGAGCTGACAGTTTACGAAGTCCTGGAAGATTATGACTTCCCAGTTGGCATTCTTCCCAAGGGCGCATTGGGCTATGAGCTAGACAACTCCACAGGTAAGTTCACAGTCTACTTGAATGGCACTTGTTCCTTTTCCATTGACTCCTATAAGTTGAAGTACAAGTCCACCATAACCGGTGTGATAACGGATGACAAGATCTCGAGCTTGAGTGGCATCAAAGTGAAGGTGCTCTTTCTGTGGCTGAGCATCGTCAAGGTGATTCGTGACGACGATAAGCTCGAGTTCTCTGTGGGCATCGCCTCCGCGGACTTTCCAGTCAGTAATTTCGTTGAGAGCCCAACCTGTGGTTGCGGTTTTGATTGTGTCAATGGGAAGGGAAGGAAGATTAAGATCAATAATTTAGTGTCCTCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

166

Amino Acids

18.03

Weight (kDa)

4.96

Isoelectric Point (pI)

17.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02816 AT4G02370
fragaria_vesca	FvH4_2g25870 FvH4_2g25880
malus_domestica	MD03G1290000.v1.1 MD03G1290100.v1.1 MD03G1290200.v1.1 MD03G1290300.v1.1 MD11G1308200.v1.1 MD11G1308300.v1.1
prunus_persica	Prupe.8G263200_v2.0.a1 Prupe.8G263300_v2.0.a1
pyrus_communis	pycom03g22950 pycom11g26940 pycom11g26950
rosa_chinensis	RchiOBHm_Chr6g0294201 RchiOBHm_Chr6g0294211
rosa_laevigata	RLG00000011890 RLG00000011891
rosa_multiflora	Rmu_co8452345.1_g000001 Rmu_sc0002462.1_g000001 Rmu_sc0002462.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173550
rosa_rugosa	Rorug06G0242400 Rorug06G0242500
rosa_samantha	Rh6AG354600 Rh6AG354700 Rh6BG361500 Rh6BG361600 Rh6CG368800 Rh6CG368900 Rh6DG355600 Rh6DG355700
rosa_wichuraiana	Rw6G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	386
AciI	CCGC	3 cut(s)	384, 386, 432
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	196, 235
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	85, 160, 285, 358
AluI	AGCT	4 cut(s)	85, 160, 285, 358
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	9, 52
Ama87I	CYCGRG	2 cut(s)	280, 359
AsiGI	ACCGGT	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	349
AvaI	CYCGRG	2 cut(s)	280, 359
BanII	GRGCYC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	9, 52
BfaI	CTAG	1 cut(s)	161
BglII	AGATCT	1 cut(s)	276
BlpI	GCTNAGC	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	104
BmeT110I	CYCGRG	2 cut(s)	280, 359
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	4 cut(s)	77, 303, 336, 384
BmuI	ACTGGG	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	3 cut(s)	138, 384, 489
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	122, 395
Bse8I	GATNNNNATC	1 cut(s)	470
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	138, 384, 489
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	470
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	2 cut(s)	122, 395
Bsh1236I	CGCG	1 cut(s)	386
BshTI	ACCGGT	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	2 cut(s)	280, 359
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	2 cut(s)	9, 52
BsmI	GAATGC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	52
BsoBI	CYCGRG	2 cut(s)	280, 359
Bsp1286I	GDGCHC	2 cut(s)	312, 419
Bsp143I	GATC	2 cut(s)	276, 471
Bsp1720I	GCTNAGC	1 cut(s)	323
BspACI	CCGC	3 cut(s)	384, 386, 432
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	122, 395
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	138, 384, 489
BssMI	GATC	2 cut(s)	276, 471
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	91, 187
Bst6I	CTCTTC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	279, 474
BstMAI	GTCTC	2 cut(s)	9, 52
BstMBI	GATC	2 cut(s)	276, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 291
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	384
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	254
Cfr42I	CCGCGG	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	238
CspAI	ACCGGT	1 cut(s)	254
CviJI	RGCY	9 cut(s)	28, 85, 153, 160, 285, 322, 358, 417, 494
CviKI_1	RGCY	9 cut(s)	28, 85, 153, 160, 285, 322, 358, 417, 494
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	2 cut(s)	278, 473
DpnII	GATC	2 cut(s)	276, 471
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	52
Eco88I	CYCGRG	2 cut(s)	280, 359
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	138
FaiI	YATR	4 cut(s)	114, 156, 228, 251
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FblI	GTMKAC	1 cut(s)	189
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	419
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	145
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	221, 340
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	5 cut(s)	76, 94, 183, 190, 246
Hpy188III	TCNNGA	2 cut(s)	280, 344
Hpy8I	GTNNAC	5 cut(s)	76, 94, 183, 190, 246
Hpy99I	CGWCG	2 cut(s)	83, 353
HpyAV	CCTTC	5 cut(s)	50, 61, 298, 448, 453
HpyCH4III	ACNGT	2 cut(s)	91, 187
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 291
HpyF3I	CTNAG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	144
KspI	CCGCGG	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	276, 471
LpnPI	CCDG	9 cut(s)	10, 29, 89, 116, 135, 159, 268, 408, 436
LweI	GCATC	4 cut(s)	77, 303, 336, 384
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	2 cut(s)	278, 473
MboI	GATC	2 cut(s)	276, 471
MboII	GAAGA	4 cut(s)	28, 119, 125, 475
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	312, 419
MluCI	AATT	2 cut(s)	403, 478
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	1 cut(s)	391
MseI	TTAA	2 cut(s)	468, 496
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	150, 291
NdeII	GATC	2 cut(s)	276, 471
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	344
PaeR7I	CTCGAG	2 cut(s)	280, 359
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	340
PflMI	CCANNNNNTGG	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	102
PinAI	ACCGGT	1 cut(s)	254
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspXI	VCTCGAGB	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	299
SacII	CCGCGG	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	468, 496
Sau3AI	GATC	2 cut(s)	276, 471
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	312, 419
SetI	ASST	8 cut(s)	87, 162, 178, 287, 309, 339, 360, 425
SfaNI	GCATC	4 cut(s)	77, 303, 336, 384
Sfr274I	CTCGAG	2 cut(s)	280, 359
Sfr303I	CCGCGG	1 cut(s)	387
SgrBI	CCGCGG	1 cut(s)	387
SlaI	CTCGAG	2 cut(s)	280, 359
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	3 cut(s)	280, 286, 359
SmoI	CTYRAG	3 cut(s)	280, 286, 359
Sse9I	AATT	2 cut(s)	403, 478
SsiI	CCGC	3 cut(s)	384, 386, 432
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	91, 187
TaqI	TCGA	2 cut(s)	281, 360
TasI	AATT	2 cut(s)	403, 478
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	468, 496
Tru9I	TTAA	2 cut(s)	468, 496
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XhoI	CTCGAG	2 cut(s)	280, 359
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.