Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002462.1

Orthogroup ID

OG0003757

Physical Location & Seq

Genomic Coordinates Reverse (-)

4525 .. 5022

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002462.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggcaacactaggcctaatactcttctttctggtctccttctcaatctcaaccccatctgcttctgtcaaggacaagctgaccgcttacgaagctctcgaagagtatgacttcccagtaggcattcttcccaaaggcgtactaagctacgagctagacaattccacaggtaaattctcagtctatttgaatggctcttgtaccttttcaatagattcatataagctcaagtacaagtccaccataacgggtgtgataaccaaagacaagatctcgagcttgagtggtatcacggtcaaggtgctgttcctgtggttgagcattgtcacagtggttcgagacgacgatgagatccagttctctgttgggatcgcctccgcggactttgccgtcagtaatttcgtggagagcccgacgtgtggttgtggatttgattgtgtcaatgtggacggaaggaagatcaaatttgacgatcagtcactagtgtcctctgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

165

Amino Acids

17.88

Weight (kDa)

4.65

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02816 AT4G02370
fragaria_vesca	FvH4_2g25870 FvH4_2g25880
malus_domestica	MD03G1290000.v1.1 MD03G1290100.v1.1 MD03G1290200.v1.1 MD03G1290300.v1.1 MD11G1308200.v1.1 MD11G1308300.v1.1
prunus_persica	Prupe.8G263200_v2.0.a1 Prupe.8G263300_v2.0.a1
pyrus_communis	pycom03g22950 pycom11g26940 pycom11g26950
rosa_chinensis	RchiOBHm_Chr6g0294201 RchiOBHm_Chr6g0294211
rosa_laevigata	RLG00000011890 RLG00000011891
rosa_multiflora	Rmu_co8452345.1_g000001 Rmu_sc0002462.1_g000001 Rmu_sc0002462.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173550
rosa_rugosa	Rorug06G0242400 Rorug06G0242500
rosa_samantha	Rh6AG354600 Rh6AG354700 Rh6BG361500 Rh6BG361600 Rh6CG368800 Rh6CG368900 Rh6DG355600 Rh6DG355700
rosa_wichuraiana	Rw6G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AccII	CGCG	1 cut(s)	380
AciI	CCGC	3 cut(s)	84, 378, 380
AclWI	GGATC	2 cut(s)	346, 377
AcsI	RAATTY	2 cut(s)	173, 464
AfaI	GTAC	3 cut(s)	141, 202, 233
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	190, 210
AhdI	GACNNNNNGTC	1 cut(s)	475
AhlI	ACTAGT	1 cut(s)	481
AjiI	CACGTC	1 cut(s)	417
AluBI	AGCT	6 cut(s)	79, 95, 147, 154, 226, 279
AluI	AGCT	6 cut(s)	79, 95, 147, 154, 226, 279
Alw26I	GTCTC	2 cut(s)	40, 333
AlwI	GGATC	2 cut(s)	346, 377
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	13
ApoI	RAATTY	2 cut(s)	173, 464
AvaI	CYCGRG	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	413
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	40, 333
BcuI	ACTAGT	1 cut(s)	481
BfaI	CTAG	3 cut(s)	11, 155, 482
BglII	AGATCT	1 cut(s)	270
BmeRI	GACNNNNNGTC	1 cut(s)	475
BmeT110I	CYCGRG	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	417
BmrI	ACTGGG	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	212, 301
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	116, 355
BseDI	CCNNGG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	116, 355
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	2 cut(s)	40, 333
BsmBI	CGTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	5 cut(s)	270, 351, 369, 459, 472
BspACI	CCGC	3 cut(s)	84, 378, 380
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	380
BspPI	GGATC	2 cut(s)	346, 377
BspTNI	GGTCTC	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	116, 355
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	5 cut(s)	270, 351, 369, 459, 472
Bst4CI	ACNGT	2 cut(s)	295, 331
Bst6I	CTCTTC	2 cut(s)	29, 96
BstDEI	CTNAG	2 cut(s)	143, 178
BstDSI	CCRYGG	1 cut(s)	378
BstFNI	CGCG	1 cut(s)	380
BstKTI	GATC	5 cut(s)	273, 354, 372, 462, 475
BstMAI	GTCTC	2 cut(s)	40, 333
BstMBI	GATC	5 cut(s)	270, 351, 369, 459, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 144, 386
BstUI	CGCG	1 cut(s)	380
BstX2I	RGATCY	2 cut(s)	270, 351
BstYI	RGATCY	2 cut(s)	270, 351
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	378
BtrI	CACGTC	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	336
Cfr42I	CCGCGG	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	140, 201, 232
CviJI	RGCY	9 cut(s)	15, 79, 95, 147, 154, 195, 226, 279, 411
CviKI_1	RGCY	9 cut(s)	15, 79, 95, 147, 154, 195, 226, 279, 411
CviQI	GTAC	3 cut(s)	140, 201, 232
DdeI	CTNAG	2 cut(s)	143, 178
DpnI	GATC	5 cut(s)	272, 353, 371, 461, 474
DpnII	GATC	5 cut(s)	270, 351, 369, 459, 472
DrdI	GACNNNNNNGTC	1 cut(s)	389
DriI	GACNNNNNGTC	1 cut(s)	475
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eam1104I	CTCTTC	2 cut(s)	29, 96
Eam1105I	GACNNNNNGTC	1 cut(s)	475
EarI	CTCTTC	2 cut(s)	29, 96
Eco147I	AGGCCT	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	413
Esp3I	CGTCTC	1 cut(s)	333
FaiI	YATR	4 cut(s)	108, 220, 222, 245
FriOI	GRGCYC	1 cut(s)	413
FspBI	CTAG	3 cut(s)	11, 155, 482
HaeIII	GGCC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	240, 448
Hpy188III	TCNNGA	3 cut(s)	98, 274, 338
Hpy8I	GTNNAC	2 cut(s)	240, 448
Hpy99I	CGWCG	2 cut(s)	347, 418
HpyAV	CCTTC	2 cut(s)	49, 447
HpyCH4III	ACNGT	2 cut(s)	295, 331
HpyCH4IV	ACGT	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 144, 386
HpyF3I	CTNAG	2 cut(s)	143, 178
HpySE526I	ACGT	1 cut(s)	416
KspI	CCGCGG	1 cut(s)	381
Kzo9I	GATC	5 cut(s)	270, 351, 369, 459, 472
LpnPI	CCDG	5 cut(s)	17, 129, 153, 323, 368
MaeI	CTAG	3 cut(s)	11, 155, 482
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	2 cut(s)	325, 477
MalI	GATC	5 cut(s)	272, 353, 371, 461, 474
MboI	GATC	5 cut(s)	270, 351, 369, 459, 472
MboII	GAAGA	4 cut(s)	16, 113, 119, 469
MflI	RGATCY	2 cut(s)	270, 351
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	4 cut(s)	160, 173, 397, 464
MnlI	CCTC	1 cut(s)	385
MseI	TTAA	1 cut(s)	496
MspA1I	CMGCKG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	123
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	92, 144, 386
NdeII	GATC	5 cut(s)	270, 351, 369, 459, 472
NmuCI	GTSAC	2 cut(s)	325, 477
PaeR7I	CTCGAG	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	270, 351
RsaI	GTAC	3 cut(s)	141, 202, 233
RsaNI	GTAC	3 cut(s)	140, 201, 232
SacII	CCGCGG	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	496
Sau3AI	GATC	5 cut(s)	270, 351, 369, 459, 472
SduI	GDGCHC	1 cut(s)	413
Sfr274I	CTCGAG	1 cut(s)	274
Sfr303I	CCGCGG	1 cut(s)	381
SgrBI	CCGCGG	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	274
SmlI	CTYRAG	3 cut(s)	227, 274, 280
SmoI	CTYRAG	3 cut(s)	227, 274, 280
SpeI	ACTAGT	1 cut(s)	481
Sse9I	AATT	4 cut(s)	160, 173, 397, 464
SseBI	AGGCCT	1 cut(s)	15
SsiI	CCGC	3 cut(s)	84, 378, 380
SspMI	CTAG	3 cut(s)	11, 155, 482
StuI	AGGCCT	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	295, 331
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	3 cut(s)	99, 275, 337
TasI	AATT	4 cut(s)	160, 173, 397, 464
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	496
Tru9I	TTAA	1 cut(s)	496
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	325, 477
Tsp45I	GTSAC	2 cut(s)	325, 477
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	336
XapI	RAATTY	2 cut(s)	173, 464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	274
XspI	CTAG	3 cut(s)	11, 155, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.