AT1G03560

pentatricopeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003325
Physical Location & Seq
Reverse (-)
890155 .. 892492
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03560.1

Sequence Viewer

Length: 1983 bp
ATGCGAAGATTTTACCGGAAGCCCTTTTCTGTACCGCTTCTGAATCGTCCGCATTGTTCTTCACAATCTCACTGTTTGTACAAAAATGGAGACTTTTTGTCGGATGATTCAAAGTGCTCGCCTTTATCGAGCTCAAGGACGAGTGTTAGATGGGTGTTCAATAGCAGCTCACTTCCTCCTCCCGAATGGATAGAACCTTTTAACGATGTCTCCGATTTGGTGAAATCGAATCGTAATCTCCTGCCGTCGCCATGGGTAAGCCAAATTCTCAACCTTTTAGATGGTTCGGCTTCTATGGAATCGAATCTAGATGGTTTCTGCCGTAAGTTTCTTATCAAACTATCGCCCAATTTTGTTTCGTTTGTGTTGAAATCCGATGAGATTCGCGAAAAACCTGATATTGCTTGGAGTTTCTTCTGTTGGTCTCGTAAGCAGAAGAAGTATACTCATAACCTCGAGTGTTATGTCTCCTTGGTTGATGTATTGGCTCTGGCAAAAGATGTGGATAGAATTAGGTTTGTAAGCAGTGAGATTAAGAAATTTGAGTTTCCTATGACTGTTTCTGCGGCGAATGCTCTGATTAAGAGTTTTGGGAAGCTTGGAATGGTGGAGGAATTGTTGTGGGTTTGGCGTAAAATGAAAGAGAATGGGATTGAGCCGACTTTGTACACTTATAACTTTTTGATGAACGGTTTAGTGAGCGCCATGTTCGTTGATTCGGCAGAGCGTGTTTTTGAGGTTATGGAGAGTGGCAGGATCAAACCAGACATTGTGACTTATAACACAATGATCAAAGGTTATTGTAAAGCAGGGCAGACACAGAAAGCTATGGAGAAGCTTAGAGATATGGAGACGAGAGGTCATGAGGCTGATAAGATTACGTATATGACTATGATCCAGGCTTGTTATGCAGATAGCGACTTTGGTTCTTGTGTGGCTTTGTATCAAGAGATGGATGAGAAGGGAATTCAAGTCCCGCCTCATGCGTTTAGCTTAGTGATTGGTGGACTTTGTAAGGAAGGGAAATTGAATGAAGGGTATACTGTTTTTGAGAATATGATACGTAAAGGATCTAAACCAAATGTAGCTATATACACGGTTTTGATAGATGGTTATGCGAAAAGTGGAAGTGTTGAAGACGCGATAAGGCTTTTACATAGAATGATAGACGAAGGGTTTAAACCCGATGTGGTAACTTATTCTGTCGTAGTTAATGGTTTGTGTAAAAACGGGAGAGTGGAAGAGGCATTGGACTATTTCCATACTTGCCGGTTTGACGGATTGGCTATCAATTCAATGTTTTATTCTAGTCTCATTGATGGTTTAGGAAAAGCGGGCAGAGTAGATGAAGCCGAGAGGCTTTTTGAAGAGATGTCTGAGAAAGGATGCACAAGGGATTCATACTGTTACAATGCACTGATCGATGCGTTTACAAAGCATCGGAAAGTCGATGAAGCGATAGCCCTGTTTAAGAGAATGGAAGAAGAAGAAGGTTGTGATCAAACGGTTTATACATACACGATACTCTTATCCGGAATGTTCAAAGAACATAGAAACGAGGAGGCGTTAAAGCTTTGGGACATGATGATCGATAAAGGCATTACACCAACCGCAGCTTGCTTCAGGGCGTTGTCGACTGGGCTATGTTTGTCCGGAAAAGTGGCGAGAGCTTGTAAGATACTGGATGAGTTAGCACCAATGGGTGTGATTCTTGATGCAGCTTGTGAAGATATGATAAATACATTGTGTAAAGCTGGTCGGATAAAAGAAGCTTGTAAATTAGCTGATGGGATAACAGAGAGAGGAAGAGAAGTGCCAGGGAGGATCAGAACAGTGATGATCAATGCGTTGAGGAAAGTGGGAAAAGCAGATTTAGCAATGAAGCTAATGCATAGCAAAATTGGGATTGGTTATGAAAGAATGGGTAGTGTTAAAAGGCGTGTCAAGTTTACGACTTTACTTGAAACTTGTTTTGACTCTTGA

Protein Analysis

660

Amino Acids

74.63

Weight (kDa)

8.07

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 187 - 233 1.1e-10 PPR repeat family
PPR_3 PF13812 191 - 230 4.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 216 - 249 3.5e-06 PPR repeat
PPR_2 PF13041 238 - 269 4.2e-08 PPR repeat family
TPR_24 PF23276 241 - 352 2.3e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 253 - 284 1.7e-12 PPR repeat
PPR_2 PF13041 255 - 302 9.2e-16 PPR repeat family
PPR PF01535 258 - 287 8.2e-09 PPR repeat
PPR_2 PF13041 291 - 339 1.9e-06 PPR repeat family
PPR_long PF17177 293 - 447 1.7e-12 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 330 - 371 2e-08 PPR repeat family
PPR_3 PF13812 349 - 405 5.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 356 - 388 1.1e-08 PPR repeat
PPR_2 PF13041 360 - 409 6.8e-17 PPR repeat family
PPR PF01535 364 - 393 2.5e-07 PPR repeat
PPR_1 PF12854 392 - 418 8.9e-11 PPR repeat
PPR PF01535 398 - 421 5.5e-06 PPR repeat
PPR_1 PF12854 427 - 459 4.9e-10 PPR repeat
PPR_2 PF13041 431 - 478 4.5e-13 PPR repeat family
PPR PF01535 435 - 463 2.5e-09 PPR repeat
PPR_1 PF12854 461 - 494 1.8e-08 PPR repeat
PPR_2 PF13041 466 - 515 4.4e-13 PPR repeat family
PPR PF01535 469 - 496 1.6e-07 PPR repeat
PPR_2 PF13041 502 - 549 1.7e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 675, 780
AccI GTMKAC 3 cut(s) 443, 1040, 1634
AccII CGCG 2 cut(s) 387, 1142
AccIII TCCGGA 2 cut(s) 1532, 1652
AciI CCGC 6 cut(s) 35, 50, 566, 977, 1334, 1611
AclWI GGATC 4 cut(s) 764, 889, 1078, 1832
AcsI RAATTY 3 cut(s) 264, 539, 966
AcuI CTGAAG 1 cut(s) 1606
AfaI GTAC 3 cut(s) 33, 80, 668
AhdI GACNNNNNGTC 2 cut(s) 97, 858
AjnI CCWGG 2 cut(s) 897, 1816
Alw21I GWGCWC 2 cut(s) 119, 134
Alw26I GTCTC 6 cut(s) 84, 214, 429, 472, 845, 1316
AlwI GGATC 4 cut(s) 764, 889, 1078, 1832
Ama87I CYCGRG 1 cut(s) 455
Aor13HI TCCGGA 2 cut(s) 1532, 1652
ApeKI GCWGC 3 cut(s) 165, 1613, 1718
ApoI RAATTY 3 cut(s) 264, 539, 966
AspLEI GCGC 1 cut(s) 704
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 455
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 1143
Bbv12I GWGCWC 2 cut(s) 119, 134
BbvI GCAGC 3 cut(s) 177, 1625, 1730
BccI CCATC 7 cut(s) 144, 275, 305, 946, 1103, 1313, 1781
BceAI ACGGC 2 cut(s) 229, 306
BciT130I CCWGG 2 cut(s) 899, 1818
BclI TGATCA 3 cut(s) 789, 1498, 1839
BcoDI GTCTC 6 cut(s) 84, 214, 429, 472, 845, 1316
BfaI CTAG 2 cut(s) 308, 1308
BfoI RGCGCY 1 cut(s) 705
BisI GCNGC 4 cut(s) 166, 567, 1614, 1719
BlsI GCNGC 4 cut(s) 167, 568, 1615, 1720
Bme1390I CCNGG 2 cut(s) 899, 1818
BmeRI GACNNNNNGTC 2 cut(s) 97, 858
BmeT110I CYCGRG 1 cut(s) 455
BmrFI CCNGG 2 cut(s) 899, 1818
BmrI ACTGGG 1 cut(s) 1647
BmsI GCATC 4 cut(s) 1376, 1414, 1447, 1705
BmuI ACTGGG 1 cut(s) 1647
BpiI GAAGAC 1 cut(s) 1143
BpuEI CTTGAG 1 cut(s) 118
Bsa29I ATCGAT 2 cut(s) 1422, 1590
BsaAI YACGTR 2 cut(s) 882, 1064
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 3 cut(s) 251, 471, 1817
BsaWI WCCGGW 3 cut(s) 15, 1532, 1652
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 602, 632
Bse118I RCCGGY 1 cut(s) 1269
Bse1I ACTGG 2 cut(s) 1642, 1686
Bse3DI GCAATG 1 cut(s) 1884
BseAI TCCGGA 2 cut(s) 1532, 1652
BseBI CCWGG 2 cut(s) 899, 1818
BseCI ATCGAT 2 cut(s) 1422, 1590
BseDI CCNNGG 3 cut(s) 251, 471, 1817
BseGI GGATG 4 cut(s) 109, 961, 1391, 1690
BseMI GCAATG 1 cut(s) 1884
BseMII CTCAG 1 cut(s) 1368
BseNI ACTGG 2 cut(s) 1642, 1686
BseRI GAGGAG 2 cut(s) 168, 1574
BseXI GCAGC 3 cut(s) 177, 1625, 1730
Bsh1236I CGCG 2 cut(s) 387, 1142
BshVI ATCGAT 2 cut(s) 1422, 1590
BsiHKAI GWGCWC 2 cut(s) 119, 134
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 4 cut(s) 16, 1270, 1533, 1653
BslFI GGGAC 2 cut(s) 959, 1592
BsmAI GTCTC 6 cut(s) 84, 214, 429, 472, 845, 1316
BsmBI CGTCTC 1 cut(s) 845
BsmFI GGGAC 2 cut(s) 959, 1592
BsmI GAATGC 1 cut(s) 577
Bso31I GGTCTC 1 cut(s) 429
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 119, 134
Bsp13I TCCGGA 2 cut(s) 1532, 1652
Bsp1407I TGTACA 2 cut(s) 78, 666
Bsp143I GATC 9 cut(s) 756, 789, 894, 1070, 1419, 1498, 1587, 1824, 1839
Bsp19I CCATGG 1 cut(s) 251
Bsp68I TCGCGA 1 cut(s) 387
BspACI CCGC 6 cut(s) 35, 50, 566, 977, 1334, 1611
BspCNI CTCAG 1 cut(s) 1369
BspDI ATCGAT 2 cut(s) 1422, 1590
BspEI TCCGGA 2 cut(s) 1532, 1652
BspFNI CGCG 2 cut(s) 387, 1142
BspHI TCATGA 1 cut(s) 862
BspPI GGATC 4 cut(s) 764, 889, 1078, 1832
BspTNI GGTCTC 1 cut(s) 429
BsrDI GCAATG 1 cut(s) 1884
BsrFI RCCGGY 1 cut(s) 1269
BsrGI TGTACA 2 cut(s) 78, 666
BsrI ACTGG 2 cut(s) 1642, 1686
BssAI RCCGGY 1 cut(s) 1269
BssECI CCNNGG 3 cut(s) 251, 471, 1817
BssMI GATC 9 cut(s) 756, 789, 894, 1070, 1419, 1498, 1587, 1824, 1839
BssNAI GTATAC 2 cut(s) 444, 1041
BssT1I CCWWGG 2 cut(s) 251, 471
Bst1107I GTATAC 2 cut(s) 444, 1041
Bst2UI CCWGG 2 cut(s) 899, 1818
Bst4CI ACNGT 8 cut(s) 74, 559, 692, 1045, 1099, 1406, 1507, 1834
Bst6I CTCTTC 3 cut(s) 1236, 1362, 1801
BstAUI TGTACA 2 cut(s) 78, 666
BstBAI YACGTR 2 cut(s) 882, 1064
BstC8I GCNNGC 3 cut(s) 119, 1336, 1618
BstDEI CTNAG 3 cut(s) 839, 994, 1377
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 4 cut(s) 109, 961, 1391, 1690
BstFNI CGCG 2 cut(s) 387, 1142
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 1 cut(s) 704
BstKTI GATC 9 cut(s) 759, 792, 897, 1073, 1422, 1501, 1590, 1827, 1842
BstMAI GTCTC 6 cut(s) 84, 214, 429, 472, 845, 1316
BstMBI GATC 9 cut(s) 756, 789, 894, 1070, 1419, 1498, 1587, 1824, 1839
BstMWI GCNNNNNNNGC 3 cut(s) 572, 908, 1874
BstNI CCWGG 2 cut(s) 899, 1818
BstSCI CCNGG 2 cut(s) 897, 1816
BstSNI TACGTA 2 cut(s) 882, 1064
BstUI CGCG 2 cut(s) 387, 1142
BstV1I GCAGC 3 cut(s) 177, 1625, 1730
BstV2I GAAGAC 1 cut(s) 1143
BstX2I RGATCY 1 cut(s) 1070
BstYI RGATCY 1 cut(s) 1070
BstZ17I GTATAC 2 cut(s) 444, 1041
Bsu15I ATCGAT 2 cut(s) 1422, 1590
BsuTUI ATCGAT 2 cut(s) 1422, 1590
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 4 cut(s) 109, 961, 1391, 1690
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 4 cut(s) 70, 532, 1415, 1839
BtuMI TCGCGA 1 cut(s) 387
Cac8I GCNNGC 3 cut(s) 119, 1336, 1618
CciI TCATGA 1 cut(s) 862
CfoI GCGC 1 cut(s) 704
Cfr10I RCCGGY 1 cut(s) 1269
ClaI ATCGAT 2 cut(s) 1422, 1590
CseI GACGC 1 cut(s) 1148
Csp6I GTAC 3 cut(s) 32, 79, 667
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviAII CATG 5 cut(s) 252, 706, 863, 983, 1582
CviQI GTAC 3 cut(s) 32, 79, 667
DdeI CTNAG 3 cut(s) 839, 994, 1377
DpnI GATC 9 cut(s) 758, 791, 896, 1072, 1421, 1500, 1589, 1826, 1841
DpnII GATC 9 cut(s) 756, 789, 894, 1070, 1419, 1498, 1587, 1824, 1839
DraI TTTAAA 1 cut(s) 1180
DriI GACNNNNNGTC 2 cut(s) 97, 858
Eam1104I CTCTTC 3 cut(s) 1236, 1362, 1801
Eam1105I GACNNNNNGTC 2 cut(s) 97, 858
EarI CTCTTC 3 cut(s) 1236, 1362, 1801
Ecl136II GAGCTC 1 cut(s) 132
Eco105I TACGTA 2 cut(s) 882, 1064
Eco130I CCWWGG 2 cut(s) 251, 471
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 1606
Eco88I CYCGRG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 966
EcoRII CCWGG 2 cut(s) 897, 1816
EcoT14I CCWWGG 2 cut(s) 251, 471
EcoT22I ATGCAT 1 cut(s) 1893
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 2 cut(s) 251, 471
Esp3I CGTCTC 1 cut(s) 845
FaeI CATG 5 cut(s) 255, 709, 866, 986, 1585
FaqI GGGAC 2 cut(s) 959, 1592
FatI CATG 5 cut(s) 251, 705, 862, 982, 1581
FauI CCCGC 2 cut(s) 984, 1327
FbaI TGATCA 3 cut(s) 789, 1498, 1839
FblI GTMKAC 3 cut(s) 443, 1040, 1634
Fnu4HI GCNGC 4 cut(s) 166, 567, 1614, 1719
FokI GGATG 4 cut(s) 116, 968, 1398, 1697
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 4 cut(s) 166, 567, 1614, 1719
FspBI CTAG 2 cut(s) 308, 1308
GlaI GCGC 1 cut(s) 703
GluI GCNGC 4 cut(s) 166, 567, 1614, 1719
HaeII RGCGCY 1 cut(s) 705
HapII CCGG 4 cut(s) 16, 1270, 1533, 1653
HgaI GACGC 1 cut(s) 1148
HhaI GCGC 1 cut(s) 704
Hin1II CATG 5 cut(s) 255, 709, 866, 986, 1585
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HincII GTYRAC 1 cut(s) 1635
HindII GTYRAC 1 cut(s) 1635
HindIII AAGCTT 4 cut(s) 596, 836, 1571, 1770
HpaII CCGG 4 cut(s) 16, 1270, 1533, 1653
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 7 cut(s) 444, 669, 1007, 1041, 1431, 1635, 1950
Hpy188I TCNGA 9 cut(s) 42, 103, 214, 376, 579, 1378, 1443, 1761, 1829
Hpy188III TCNNGA 9 cut(s) 182, 308, 386, 863, 947, 1533, 1653, 1712, 1980
Hpy8I GTNNAC 7 cut(s) 444, 669, 1007, 1041, 1431, 1635, 1950
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 5 cut(s) 955, 1013, 1028, 1166, 1484
HpyCH4III ACNGT 8 cut(s) 74, 559, 692, 1045, 1099, 1406, 1507, 1834
HpyCH4IV ACGT 2 cut(s) 881, 1063
HpyCH4V TGCA 5 cut(s) 911, 1389, 1415, 1718, 1891
HpyF10VI GCNNNNNNNGC 3 cut(s) 572, 908, 1874
HpyF3I CTNAG 3 cut(s) 839, 994, 1377
HpySE526I ACGT 2 cut(s) 881, 1063
Hsp92II CATG 5 cut(s) 255, 709, 866, 986, 1585
HspAI GCGC 1 cut(s) 702
Kpn2I TCCGGA 2 cut(s) 1532, 1652
Ksp22I TGATCA 3 cut(s) 789, 1498, 1839
Kzo9I GATC 9 cut(s) 756, 789, 894, 1070, 1419, 1498, 1587, 1824, 1839
Lsp1109I GCAGC 3 cut(s) 177, 1625, 1730
LweI GCATC 4 cut(s) 1376, 1414, 1447, 1705
MaeI CTAG 2 cut(s) 308, 1308
MaeII ACGT 2 cut(s) 881, 1063
MaeIII GTNAC 3 cut(s) 772, 1192, 1406
MalI GATC 9 cut(s) 758, 791, 896, 1072, 1421, 1500, 1589, 1826, 1841
MboI GATC 9 cut(s) 756, 789, 894, 1070, 1419, 1498, 1587, 1824, 1839
MflI RGATCY 1 cut(s) 1070
MhlI GDGCHC 2 cut(s) 119, 134
MlyI GAGTC 1 cut(s) 1970
MmeI TCCRAC 2 cut(s) 81, 1739
Mph1103I ATGCAT 1 cut(s) 1893
MroI TCCGGA 2 cut(s) 1532, 1652
MseI TTAA 8 cut(s) 201, 534, 582, 1179, 1212, 1470, 1568, 1932
MspI CCGG 4 cut(s) 16, 1270, 1533, 1653
MspR9I CCNGG 2 cut(s) 899, 1818
MssI GTTTAAAC 1 cut(s) 1180
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 2 cut(s) 899, 1818
MvnI CGCG 2 cut(s) 387, 1142
MwoI GCNNNNNNNGC 3 cut(s) 572, 908, 1874
NcoI CCATGG 1 cut(s) 251
NdeII GATC 9 cut(s) 756, 789, 894, 1070, 1419, 1498, 1587, 1824, 1839
NlaIII CATG 5 cut(s) 255, 709, 866, 986, 1585
NmeAIII GCCGAG 1 cut(s) 1378
NmuCI GTSAC 1 cut(s) 772
NruI TCGCGA 1 cut(s) 387
NsiI ATGCAT 1 cut(s) 1893
PaeR7I CTCGAG 1 cut(s) 455
PagI TCATGA 1 cut(s) 862
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 210
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 9 cut(s) 43, 107, 229, 299, 304, 382, 716, 1397, 1708
PkrI GCNGC 4 cut(s) 167, 568, 1615, 1720
PleI GAGTC 1 cut(s) 1970
PmeI GTTTAAAC 1 cut(s) 1180
PpsI GAGTC 1 cut(s) 1970
Ppu21I YACGTR 2 cut(s) 882, 1064
PsiI TTATAA 2 cut(s) 675, 780
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 897, 1816
PspGI CCWGG 2 cut(s) 897, 1816
PspXI VCTCGAGB 1 cut(s) 455
PsuI RGATCY 1 cut(s) 1070
RruI TCGCGA 1 cut(s) 387
RsaI GTAC 3 cut(s) 33, 80, 668
RsaNI GTAC 3 cut(s) 32, 79, 667
SacI GAGCTC 1 cut(s) 134
SalI GTCGAC 1 cut(s) 1633
SaqAI TTAA 8 cut(s) 201, 534, 582, 1179, 1212, 1470, 1568, 1932
SatI GCNGC 4 cut(s) 166, 567, 1614, 1719
Sau3AI GATC 9 cut(s) 756, 789, 894, 1070, 1419, 1498, 1587, 1824, 1839
SchI GAGTC 1 cut(s) 1970
ScrFI CCNGG 2 cut(s) 899, 1818
SduI GDGCHC 2 cut(s) 119, 134
SfaNI GCATC 4 cut(s) 1376, 1414, 1447, 1705
Sfr274I CTCGAG 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 455
SmlI CTYRAG 2 cut(s) 133, 455
SmoI CTYRAG 2 cut(s) 133, 455
SnaBI TACGTA 2 cut(s) 882, 1064
SsiI CCGC 6 cut(s) 35, 50, 566, 977, 1334, 1611
SspMI CTAG 2 cut(s) 308, 1308
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 897, 1816
StyI CCWWGG 2 cut(s) 251, 471
TaaI ACNGT 8 cut(s) 74, 559, 692, 1045, 1099, 1406, 1507, 1834
TaiI ACGT 2 cut(s) 884, 1066
TaqI TCGA 8 cut(s) 128, 227, 302, 456, 1422, 1449, 1590, 1634
TatI WGTACW 2 cut(s) 78, 666
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 9 cut(s) 43, 107, 229, 299, 304, 382, 716, 1397, 1708
Tru1I TTAA 8 cut(s) 201, 534, 582, 1179, 1212, 1470, 1568, 1932
Tru9I TTAA 8 cut(s) 201, 534, 582, 1179, 1212, 1470, 1568, 1932
TscAI CASTG 4 cut(s) 77, 532, 1422, 1839
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 3 cut(s) 165, 1613, 1718
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 8 cut(s) 653, 701, 1047, 1362, 1389, 1467, 1895, 1929
TspGWI ACGGA 1 cut(s) 1293
TspRI CASTG 4 cut(s) 77, 532, 1422, 1839
XapI RAATTY 3 cut(s) 264, 539, 966
XbaI TCTAGA 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 455
XmiI GTMKAC 3 cut(s) 443, 1040, 1634
XspI CTAG 2 cut(s) 308, 1308
Zsp2I ATGCAT 1 cut(s) 1893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.