Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003325

Physical Location & Seq

Genomic Coordinates Forward (+)

6648671 .. 6649192

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1090900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAACTTTTTGGTGACTTCTCTGGCATCGAATTCTTTGATTAAAAGCTTTGGATGTCTTGGGATGGTTGATGAGCTGTTGTGGGTTTGGCGTAGAATGAAGGAGAATGGGATTGAGCCTAGTTTGTATGCTTATAACTTTCTATTGAATGGTTTGGTGAATTCGATGTTTATTGAATCAGCTGAGCGGGTTTTTGAGGTTATGGAAGGCGGGAAAATTGCACCGGACATTGCGACTTATAATACAATGATCAAAGGGTATCGTAAGGGAGGGAAAACCCAGAAAGCAATGGAGAAGTTTAGAGCTATGGAGGGGAGGAATGTGGAACCTGATAAGATTACTTATATGGCTTTAATACAGGGGTGTTATTCAGAAGGAGATGTTGCTTCGTGTTGTGGAAAAACTGATGAAGCATTAGCACTCTTTAAGAAAATGGAAGAGGAAGGTTGTGATCAGATGGTTTATACATACACAATACTCATCAGCGGACATTTTAAGAGCACAGAAATGAAGAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

174

Amino Acids

19.58

Weight (kDa)

6.17

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	10 - 127	8.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	11 - 54	1.8e-07	PPR repeat family
PPR_2	PF13041	44 - 88	9.2e-10	PPR repeat family
PPR_1	PF12854	73 - 104	9.6e-07	PPR repeat
PPR_2	PF13041	75 - 122	5.4e-14	PPR repeat family
PPR	PF01535	79 - 108	1.4e-06	PPR repeat
PPR_2	PF13041	132 - 165	2.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03560
fragaria_vesca	FvH4_6g45000
malus_domestica	MD09G1090900.v1.1 MD17G1080900.v1.1
prunus_persica	Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1
pyrus_communis	pycom03g08050 pycom09g01610 pycom17g07920
rosa_chinensis	RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621
rosa_laevigata	RLG00000021332
rosa_multiflora	Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088200 Rroxscaffold_5G00386740
rosa_rugosa	Rorug02G0496100 Rorug04G0369800 Rorug04G0369900
rosa_samantha	Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600
rosa_wichuraiana	Rw2G046560 Rw4G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	135, 240
AccBSI	CCGCTC	1 cut(s)	187
AciI	CCGC	3 cut(s)	187, 210, 486
AcsI	RAATTY	2 cut(s)	31, 160
AgsI	TTSAA	2 cut(s)	148, 176
AluBI	AGCT	4 cut(s)	48, 76, 182, 305
AluI	AGCT	4 cut(s)	48, 76, 182, 305
Alw21I	GWGCWC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	31, 160
AsuHPI	GGTGA	2 cut(s)	25, 169
Bbv12I	GWGCWC	1 cut(s)	503
BccI	CCATC	2 cut(s)	58, 451
BclI	TGATCA	2 cut(s)	249, 451
BfaI	CTAG	1 cut(s)	120
BlpI	GCTNAGC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	327
BmsI	GCATC	1 cut(s)	35
Bpu1102I	GCTNAGC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	223
Bse3DI	GCAATG	2 cut(s)	228, 294
BseGI	GGATG	2 cut(s)	59, 69
BseMI	GCAATG	2 cut(s)	228, 294
BseMII	CTCAG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	503
BsiSI	CCGG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	249, 451
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	3 cut(s)	187, 210, 486
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	2 cut(s)	228, 294
BssMI	GATC	2 cut(s)	249, 451
Bst6I	CTCTTC	2 cut(s)	432, 506
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	59, 69
BstKTI	GATC	2 cut(s)	252, 454
BstMBI	GATC	2 cut(s)	249, 451
BtsCI	GGATG	2 cut(s)	59, 69
CviJI	RGCY	6 cut(s)	48, 76, 118, 182, 305, 350
CviKI_1	RGCY	6 cut(s)	48, 76, 118, 182, 305, 350
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	2 cut(s)	251, 453
DpnII	GATC	2 cut(s)	249, 451
Eam1104I	CTCTTC	2 cut(s)	432, 506
EarI	CTCTTC	2 cut(s)	432, 506
EcoRI	GAATTC	2 cut(s)	31, 160
FaiI	YATR	9 cut(s)	129, 135, 203, 240, 308, 345, 347, 465, 469
FauI	CCCGC	2 cut(s)	180, 203
FbaI	TGATCA	2 cut(s)	249, 451
FokI	GGATG	2 cut(s)	66, 76
FspBI	CTAG	1 cut(s)	120
HapII	CCGG	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	25, 169
Hpy188I	TCNGA	2 cut(s)	373, 456
HpyAV	CCTTC	4 cut(s)	94, 200, 368, 437
HpyCH4V	TGCA	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	183
Ksp22I	TGATCA	2 cut(s)	249, 451
Kzo9I	GATC	2 cut(s)	249, 451
LpnPI	CCDG	5 cut(s)	8, 237, 293, 342, 344
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	251, 453
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	2 cut(s)	249, 451
MboII	GAAGA	1 cut(s)	449
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	3 cut(s)	31, 160, 216
MnlI	CCTC	6 cut(s)	190, 263, 304, 309, 433, 507
MseI	TTAA	4 cut(s)	42, 353, 426, 495
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	2 cut(s)	182, 486
MspI	CCGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	249, 451
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	176
PsiI	TTATAA	2 cut(s)	135, 240
PspN4I	GGNNCC	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	4 cut(s)	42, 353, 426, 495
Sau3AI	GATC	2 cut(s)	249, 451
SduI	GDGCHC	1 cut(s)	503
SetI	ASST	7 cut(s)	50, 78, 184, 201, 307, 331, 448
SfaNI	GCATC	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	31, 160, 216
SsiI	CCGC	3 cut(s)	187, 210, 486
SspMI	CTAG	1 cut(s)	120
TaqI	TCGA	2 cut(s)	29, 164
TasI	AATT	3 cut(s)	31, 160, 216
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	4 cut(s)	42, 353, 426, 495
Tru9I	TTAA	4 cut(s)	42, 353, 426, 495
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	17, 113, 423
XapI	RAATTY	2 cut(s)	31, 160
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.