Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003325

Physical Location & Seq

Genomic Coordinates Forward (+)

54097143 .. 54099758

Gene Structure 2616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0369800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGCCGATTGGAGGCGGTTTAAGGAGGTTGGGCTGCTCGATGAGGCAGCCAATAAGGTCGCTAGGCTTGAGTCTGAGCTTTATGATTACCAACATAGCATGGGGCTTCTCCTCAGTCCTCATTGAGAAGAAAGAAAGGCGAGAGGAGAATTTGAGGAACATATTGGTGGAGGAAAAGAGGTCTGCAGCTGAGCTCGAAAAGTCATTGCGTGAAATGCACGACTGGATAAAGCATGCATCTGAGGCGAAGGTGGCTGATGCAAATGCGTTGATTGTTAGTGTTGAAGATAAATCTCTAGTGACAGATGAGAAGTTTCTTGCTGCTGAAGCCAAGCTTGCTGAGGCCAACAAAAAGAGTCTGGAGGTGGAGAGGAGGTTGCAAGAGGTGGAGACACGTGAGAGTGTGCTTCGGAGGGAGCAAGCTTCATTAAGTACAGAGAGAGAGGCACACAAGACAACTTTTTACAGACAAAGAGAAGACTTGAACGAGTGGGAGAAGAAGTTAAAAGAAGGGGAAGAGAGGCTAAGCAATCTTCATAAAATTTTGAACGAGAAAGAGGAAAAGACAAATGAAAACGAGATGATTCTTAAGCAAAAAGAGAAAGACCTTTATGAGGCTGAAAGGAAGATTGAGTCTTCAAACTCTCTGTTGAAAGAGAAGGAAGATGATGTGAATAAATGCCTGGCTGACCTAGTCTCAAAGGAAAAGGAGGTTCATTCAGCTTCATACATCTTAGAGATGAAGGAGAAAGAATTACATGCATTGGAGGAAAAACTAAATTCAAGAGAAAATGTGGAGATTCAAGAGCATCTTGGCCAGCACAGGGCCATTCTTGATAGAAAAATGCAGGCTTTTGAGTTGGGAATTGAGGAAAGGAGGAAATCTTTTGAGAAGGAACAGAGTAGCAAGATAGAAGCAGTGGAACAAAAGGAACTTGAAATCAGTCATAAGGAAAAACTGTTGAAGAAGCAAGAGAAAGCGTTGGATGAGAAATCAGAGAGGCTGAAGGAGAAAAATAAGGAAGTTGAAACAAATTTGAAAAATTTGAAGGAGAAAGAGAAGACCTTCAAAGCTGATGAGAAAAAGTTAGAGCTGGAAAGGCAGCAAATACTTACTGATATAGAGCACCTTCAGAATCTTAAAGATGAAATTCAGGAAATAAAAGATGAAAATGCTCAACTGGAGCAGCAAATTCGTGAAGGGAGAGAGAAGCAGGGAATTACCGAGAAAGAGAGGTCGGACCACCTACGTTTGCAGTCAGAACTGCAGCCGGAAATAAACAATTATATACTTCAGAATGAGTTACTTTTGAAGGAAGCTGAAGATCTGAAGCAGGAGAGGGAAAAGTTCGAAAAAGACTGGGAAGATTTGGATGAGAGAAGAGCTAAAGTTGATGCTGAGCTTAGAAAAGTTGTTGAAGAGAGAAAAATTGGAAAGATTACAATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

483

Amino Acids

57.12

Weight (kDa)

5.57

Isoelectric Point (pI)

57.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03560
fragaria_vesca	FvH4_6g45000
malus_domestica	MD09G1090900.v1.1 MD17G1080900.v1.1
prunus_persica	Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1
pyrus_communis	pycom03g08050 pycom09g01610 pycom17g07920
rosa_chinensis	RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621
rosa_laevigata	RLG00000021332
rosa_multiflora	Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088200 Rroxscaffold_5G00386740
rosa_rugosa	Rorug02G0496100 Rorug04G0369800 Rorug04G0369900
rosa_samantha	Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600
rosa_wichuraiana	Rw2G046560 Rw4G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	814
AcsI	RAATTY	7 cut(s)	148, 540, 778, 1033, 1042, 1149, 1191
AcuI	CTGAAG	6 cut(s)	345, 1025, 1115, 1277, 1341, 1349
AcvI	CACGTG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	3 cut(s)	11, 613, 823
AflII	CTTAAG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	681
Alw21I	GWGCWC	2 cut(s)	195, 1128
Alw26I	GTCTC	2 cut(s)	383, 700
AoxI	GGCC	3 cut(s)	342, 814, 825
ApeKI	GCWGC	7 cut(s)	33, 46, 185, 320, 1102, 1186, 1267
ApoI	RAATTY	7 cut(s)	148, 540, 778, 1033, 1042, 1149, 1191
Asp700I	GAANNNNTTC	1 cut(s)	1064
AspS9I	GGNCC	2 cut(s)	825, 1240
AsuII	TTCGAA	1 cut(s)	1350
AvaII	GGWCC	1 cut(s)	1240
BalI	TGGCCA	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	195
BbrPI	CACGTG	1 cut(s)	395
BbsI	GAAGAC	3 cut(s)	483, 627, 1067
Bbv12I	GWGCWC	2 cut(s)	195, 1128
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	7 cut(s)	20, 58, 197, 307, 1114, 1198, 1279
BcgI	CGANNNNNNTGC	2 cut(s)	1175, 1209
BciT130I	CCWGG	1 cut(s)	683
BcoDI	GTCTC	2 cut(s)	383, 700
BfaI	CTAG	3 cut(s)	62, 296, 692
BfmI	CTRYAG	2 cut(s)	183, 1265
BfrI	CTTAAG	1 cut(s)	587
BglII	AGATCT	1 cut(s)	1324
BisI	GCNGC	7 cut(s)	34, 47, 186, 321, 1103, 1187, 1268
BlpI	GCTNAGC	3 cut(s)	189, 524, 1398
BlsI	GCNGC	7 cut(s)	35, 48, 187, 322, 1104, 1188, 1269
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	1 cut(s)	1240
BmgT120I	GGNCC	2 cut(s)	825, 1240
BmrFI	CCNGG	1 cut(s)	683
BmrI	ACTGGG	1 cut(s)	1369
BmsI	GCATC	4 cut(s)	245, 247, 817, 1384
BmuI	ACTGGG	1 cut(s)	1369
BpiI	GAAGAC	3 cut(s)	483, 627, 1067
BpmI	CTGGAG	2 cut(s)	380, 1202
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu1102I	GCTNAGC	3 cut(s)	189, 524, 1398
Bpu14I	TTCGAA	1 cut(s)	1350
BpuEI	CTTGAG	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	395
BsaXI	ACNNNNNCTCC	4 cut(s)	359, 389, 485, 515
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 613, 823
Bse1I	ACTGG	3 cut(s)	227, 1185, 1364
Bse3DI	GCAATG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	683
BseGI	GGATG	2 cut(s)	991, 1378
BseLI	CCNNNNNNNGG	3 cut(s)	11, 613, 823
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	6 cut(s)	65, 126, 180, 231, 330, 1389
BseNI	ACTGG	3 cut(s)	227, 1185, 1364
BseRI	GAGGAG	3 cut(s)	100, 158, 385
BseXI	GCAGC	7 cut(s)	20, 58, 197, 307, 1114, 1198, 1279
BshFI	GGCC	3 cut(s)	344, 816, 827
BsiHKAI	GWGCWC	2 cut(s)	195, 1128
BsiSI	CCGG	1 cut(s)	1271
BslI	CCNNNNNNNGG	3 cut(s)	11, 613, 823
BsmAI	GTCTC	2 cut(s)	383, 700
BsnI	GGCC	3 cut(s)	344, 816, 827
Bsp119I	TTCGAA	1 cut(s)	1350
Bsp1286I	GDGCHC	2 cut(s)	195, 1128
Bsp143I	GATC	1 cut(s)	1324
Bsp1720I	GCTNAGC	3 cut(s)	189, 524, 1398
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	3 cut(s)	344, 816, 827
BspCNI	CTCAG	6 cut(s)	66, 125, 181, 232, 331, 1390
BspMAI	CTGCAG	2 cut(s)	187, 1269
BspQI	GCTCTTC	1 cut(s)	1375
BspT104I	TTCGAA	1 cut(s)	1350
BspTI	CTTAAG	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	227, 1185, 1364
BssMI	GATC	1 cut(s)	1324
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	1 cut(s)	960
Bst6I	CTCTTC	3 cut(s)	510, 1375, 1413
BstAFI	CTTAAG	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	1350
BstC8I	GCNNGC	5 cut(s)	234, 336, 420, 818, 849
BstDEI	CTNAG	9 cut(s)	74, 112, 189, 240, 339, 524, 733, 1398, 1403
BstENI	CCTNNNNNAGG	1 cut(s)	611
BstF5I	GGATG	2 cut(s)	991, 1378
BstKTI	GATC	1 cut(s)	1327
BstMAI	GTCTC	2 cut(s)	383, 700
BstMBI	GATC	1 cut(s)	1324
BstMWI	GCNNNNNNNGC	6 cut(s)	214, 242, 251, 326, 335, 1099
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	2 cut(s)	236, 761
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	2 cut(s)	183, 1265
BstV1I	GCAGC	7 cut(s)	20, 58, 197, 307, 1114, 1198, 1279
BstV2I	GAAGAC	3 cut(s)	483, 627, 1067
BstX2I	RGATCY	1 cut(s)	1324
BstYI	RGATCY	1 cut(s)	1324
BsuRI	GGCC	3 cut(s)	344, 816, 827
BtsCI	GGATG	2 cut(s)	991, 1378
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	1 cut(s)	924
Cac8I	GCNNGC	5 cut(s)	234, 336, 420, 818, 849
Cfr13I	GGNCC	2 cut(s)	825, 1240
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	3 cut(s)	99, 233, 758
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	9 cut(s)	74, 112, 189, 240, 339, 524, 733, 1398, 1403
DpnI	GATC	1 cut(s)	1326
DpnII	GATC	1 cut(s)	1324
EaeI	YGGCCR	1 cut(s)	814
Eam1104I	CTCTTC	3 cut(s)	510, 1375, 1413
EarI	CTCTTC	3 cut(s)	510, 1375, 1413
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	1240
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	6 cut(s)	345, 1025, 1115, 1277, 1341, 1349
Eco72I	CACGTG	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	681
EcoT22I	ATGCAT	2 cut(s)	238, 763
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	3 cut(s)	102, 236, 761
FalI	AAGNNNNNCTT	4 cut(s)	318, 350, 795, 827
FatI	CATG	3 cut(s)	98, 232, 757
Fnu4HI	GCNGC	7 cut(s)	34, 47, 186, 321, 1103, 1187, 1268
FokI	GGATG	2 cut(s)	998, 1385
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	7 cut(s)	34, 47, 186, 321, 1103, 1187, 1268
FspBI	CTAG	3 cut(s)	62, 296, 692
GluI	GCNGC	7 cut(s)	34, 47, 186, 321, 1103, 1187, 1268
GsuI	CTGGAG	2 cut(s)	380, 1202
HaeIII	GGCC	3 cut(s)	344, 816, 827
HapII	CCGG	1 cut(s)	1271
Hin1II	CATG	3 cut(s)	102, 236, 761
HindIII	AAGCTT	2 cut(s)	332, 420
HinfI	GANTC	6 cut(s)	70, 355, 583, 632, 799, 1135
HpaII	CCGG	1 cut(s)	1271
Hpy188I	TCNGA	9 cut(s)	75, 241, 411, 997, 1134, 1240, 1261, 1296, 1329
Hpy188III	TCNNGA	6 cut(s)	359, 783, 803, 833, 1154, 1196
HpyCH4III	ACNGT	1 cut(s)	960
HpyCH4IV	ACGT	2 cut(s)	394, 1249
HpyCH4V	TGCA	9 cut(s)	185, 217, 236, 260, 379, 761, 847, 1255, 1267
HpyF10VI	GCNNNNNNNGC	6 cut(s)	214, 242, 251, 326, 335, 1099
HpyF3I	CTNAG	9 cut(s)	74, 112, 189, 240, 339, 524, 733, 1398, 1403
HpySE526I	ACGT	2 cut(s)	394, 1249
Hsp92II	CATG	3 cut(s)	102, 236, 761
Kzo9I	GATC	1 cut(s)	1324
LguI	GCTCTTC	1 cut(s)	1375
LmnI	GCTCC	2 cut(s)	415, 1183
Lsp1109I	GCAGC	7 cut(s)	20, 58, 197, 307, 1114, 1198, 1279
LweI	GCATC	4 cut(s)	245, 247, 817, 1384
MaeI	CTAG	3 cut(s)	62, 296, 692
MaeII	ACGT	2 cut(s)	394, 1249
MaeIII	GTNAC	2 cut(s)	298, 1302
MalI	GATC	1 cut(s)	1326
MboI	GATC	1 cut(s)	1324
MflI	RGATCY	1 cut(s)	1324
MhlI	GDGCHC	2 cut(s)	195, 1128
MlsI	TGGCCA	1 cut(s)	816
MluNI	TGGCCA	1 cut(s)	816
MlyI	GAGTC	3 cut(s)	79, 364, 641
MmeI	TCCRAC	2 cut(s)	963, 1218
Mox20I	TGGCCA	1 cut(s)	816
Mph1103I	ATGCAT	2 cut(s)	238, 763
MroXI	GAANNNNTTC	1 cut(s)	1064
MscI	TGGCCA	1 cut(s)	816
MseI	TTAA	5 cut(s)	20, 428, 503, 588, 1140
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	816
MspA1I	CMGCKG	1 cut(s)	188
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	1 cut(s)	1271
MspR9I	CCNGG	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	683
MwoI	GCNNNNNNNGC	6 cut(s)	214, 242, 251, 326, 335, 1099
NdeII	GATC	1 cut(s)	1324
NlaIII	CATG	3 cut(s)	102, 236, 761
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	2 cut(s)	238, 763
NspI	RCATGY	2 cut(s)	236, 761
NspV	TTCGAA	1 cut(s)	1350
PaeI	GCATGC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	1375
PdmI	GAANNNNTTC	1 cut(s)	1064
PfeI	GAWTC	3 cut(s)	583, 799, 1135
PflFI	GACNNNGTC	1 cut(s)	692
PkrI	GCNGC	7 cut(s)	35, 48, 187, 322, 1104, 1188, 1269
PleI	GAGTC	3 cut(s)	78, 363, 640
PmaCI	CACGTG	1 cut(s)	395
PmlI	CACGTG	1 cut(s)	395
PpsI	GAGTC	3 cut(s)	78, 363, 640
Ppu21I	YACGTR	1 cut(s)	395
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	681
PspCI	CACGTG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	681
PspPI	GGNCC	2 cut(s)	825, 1240
PstI	CTGCAG	2 cut(s)	187, 1269
PsuI	RGATCY	1 cut(s)	1324
PsyI	GACNNNGTC	1 cut(s)	692
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	1375
SaqAI	TTAA	5 cut(s)	20, 428, 503, 588, 1140
SatI	GCNGC	7 cut(s)	34, 47, 186, 321, 1103, 1187, 1268
Sau3AI	GATC	1 cut(s)	1324
Sau96I	GGNCC	2 cut(s)	825, 1240
SchI	GAGTC	3 cut(s)	79, 364, 641
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	2 cut(s)	195, 1128
SfaNI	GCATC	4 cut(s)	245, 247, 817, 1384
SfcI	CTRYAG	2 cut(s)	183, 1265
SfuI	TTCGAA	1 cut(s)	1350
SinI	GGWCC	1 cut(s)	1240
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	67, 587
SmoI	CTYRAG	2 cut(s)	67, 587
SphI	GCATGC	1 cut(s)	236
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	3 cut(s)	62, 296, 692
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	681
TaaI	ACNGT	1 cut(s)	960
TaiI	ACGT	2 cut(s)	397, 1252
TaqI	TCGA	3 cut(s)	38, 195, 1350
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	3 cut(s)	583, 799, 1135
Tru1I	TTAA	5 cut(s)	20, 428, 503, 588, 1140
Tru9I	TTAA	5 cut(s)	20, 428, 503, 588, 1140
TscAI	CASTG	1 cut(s)	924
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	7 cut(s)	33, 46, 185, 320, 1102, 1186, 1267
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	8 cut(s)	414, 524, 585, 704, 714, 755, 1161, 1182
TspRI	CASTG	1 cut(s)	924
Tth111I	GACNNNGTC	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	1240
XagI	CCTNNNNNAGG	1 cut(s)	611
XapI	RAATTY	7 cut(s)	148, 540, 778, 1033, 1042, 1149, 1191
XceI	RCATGY	2 cut(s)	236, 761
XmnI	GAANNNNTTC	1 cut(s)	1064
XspI	CTAG	3 cut(s)	62, 296, 692
Zsp2I	ATGCAT	2 cut(s)	238, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.