PPR repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G03560 |
| fragaria_vesca | FvH4_6g45000 |
| malus_domestica | MD09G1090900.v1.1 MD17G1080900.v1.1 |
| prunus_persica | Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1 |
| pyrus_communis | pycom03g08050 pycom09g01610 pycom17g07920 |
| rosa_chinensis | RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621 |
| rosa_laevigata | RLG00000021332 |
| rosa_multiflora | Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00088200 Rroxscaffold_5G00386740 |
| rosa_rugosa | Rorug02G0496100 Rorug04G0369800 Rorug04G0369900 |
| rosa_samantha | Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600 |
| rosa_wichuraiana | Rw2G046560 Rw4G036860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 99 |
| AcyI | GRCGYC | 1 cut(s) | 16 |
| AfaI | GTAC | 1 cut(s) | 143 |
| AflII | CTTAAG | 1 cut(s) | 196 |
| AgsI | TTSAA | 1 cut(s) | 64 |
| AleI | CACNNNNGTG | 1 cut(s) | 137 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 178 |
| AspS9I | GGNCC | 1 cut(s) | 175 |
| AvaII | GGWCC | 1 cut(s) | 175 |
| BccI | CCATC | 1 cut(s) | 103 |
| BfrI | CTTAAG | 1 cut(s) | 196 |
| Bme18I | GGWCC | 1 cut(s) | 175 |
| BmgT120I | GGNCC | 1 cut(s) | 175 |
| BmsI | GCATC | 1 cut(s) | 204 |
| Bpu10I | CCTNAGC | 1 cut(s) | 179 |
| BsaHI | GRCGYC | 1 cut(s) | 16 |
| BsaJI | CCNNGG | 1 cut(s) | 135 |
| BsaWI | WCCGGW | 1 cut(s) | 206 |
| Bse1I | ACTGG | 1 cut(s) | 168 |
| Bse3DI | GCAATG | 2 cut(s) | 93, 167 |
| BseDI | CCNNGG | 1 cut(s) | 135 |
| BseGI | GGATG | 1 cut(s) | 125 |
| BseMI | GCAATG | 2 cut(s) | 93, 167 |
| BseMII | CTCAG | 1 cut(s) | 170 |
| BseNI | ACTGG | 1 cut(s) | 168 |
| BsiSI | CCGG | 1 cut(s) | 207 |
| BspCNI | CTCAG | 1 cut(s) | 171 |
| BspTI | CTTAAG | 1 cut(s) | 196 |
| BsrDI | GCAATG | 2 cut(s) | 93, 167 |
| BsrI | ACTGG | 1 cut(s) | 168 |
| BssECI | CCNNGG | 1 cut(s) | 135 |
| BssNI | GRCGYC | 1 cut(s) | 16 |
| Bst4CI | ACNGT | 1 cut(s) | 136 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstACI | GRCGYC | 1 cut(s) | 16 |
| BstAFI | CTTAAG | 1 cut(s) | 196 |
| BstDEI | CTNAG | 1 cut(s) | 179 |
| BstDSI | CCRYGG | 1 cut(s) | 135 |
| BstF5I | GGATG | 1 cut(s) | 125 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 136 |
| BtgI | CCRYGG | 1 cut(s) | 135 |
| BtsCI | GGATG | 1 cut(s) | 125 |
| CaiI | CAGNNNCTG | 1 cut(s) | 178 |
| Cfr13I | GGNCC | 1 cut(s) | 175 |
| CseI | GACGC | 1 cut(s) | 5 |
| Csp6I | GTAC | 1 cut(s) | 142 |
| CviJI | RGCY | 1 cut(s) | 183 |
| CviKI_1 | RGCY | 1 cut(s) | 183 |
| CviQI | GTAC | 1 cut(s) | 142 |
| DdeI | CTNAG | 1 cut(s) | 179 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Eco47I | GGWCC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 99 |
| EcoO109I | RGGNCCY | 1 cut(s) | 175 |
| FaiI | YATR | 1 cut(s) | 33 |
| FokI | GGATG | 1 cut(s) | 132 |
| HapII | CCGG | 1 cut(s) | 207 |
| HgaI | GACGC | 1 cut(s) | 5 |
| Hin1I | GRCGYC | 1 cut(s) | 16 |
| HpaII | CCGG | 1 cut(s) | 207 |
| Hpy166II | GTNNAC | 2 cut(s) | 125, 142 |
| Hpy188I | TCNGA | 2 cut(s) | 79, 213 |
| Hpy8I | GTNNAC | 2 cut(s) | 125, 142 |
| Hpy99I | CGWCG | 1 cut(s) | 21 |
| HpyAV | CCTTC | 2 cut(s) | 94, 242 |
| HpyCH4III | ACNGT | 1 cut(s) | 136 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 3 cut(s) | 23, 172, 217 |
| HpyF3I | CTNAG | 1 cut(s) | 179 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92I | GRCGYC | 1 cut(s) | 16 |
| LpnPI | CCDG | 6 cut(s) | 149, 158, 191, 218, 220, 229 |
| LweI | GCATC | 1 cut(s) | 204 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MboII | GAAGA | 2 cut(s) | 17, 92 |
| MluCI | AATT | 1 cut(s) | 92 |
| MmeI | TCCRAC | 1 cut(s) | 253 |
| MnlI | CCTC | 3 cut(s) | 5, 61, 76 |
| MseI | TTAA | 1 cut(s) | 197 |
| MslI | CAYNNNNRTG | 1 cut(s) | 137 |
| MspCI | CTTAAG | 1 cut(s) | 196 |
| MspI | CCGG | 1 cut(s) | 207 |
| OliI | CACNNNNGTG | 1 cut(s) | 137 |
| PpuMI | RGGWCCY | 1 cut(s) | 175 |
| Psp5II | RGGWCCY | 1 cut(s) | 175 |
| PspPI | GGNCC | 1 cut(s) | 175 |
| PspPPI | RGGWCCY | 1 cut(s) | 175 |
| PstNI | CAGNNNCTG | 1 cut(s) | 178 |
| RsaI | GTAC | 1 cut(s) | 143 |
| RsaNI | GTAC | 1 cut(s) | 142 |
| RseI | CAYNNNNRTG | 1 cut(s) | 137 |
| SaqAI | TTAA | 1 cut(s) | 197 |
| Sau96I | GGNCC | 1 cut(s) | 175 |
| SetI | ASST | 4 cut(s) | 147, 180, 228, 253 |
| SfaNI | GCATC | 1 cut(s) | 204 |
| SinI | GGWCC | 1 cut(s) | 175 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 137 |
| SmlI | CTYRAG | 1 cut(s) | 196 |
| SmoI | CTYRAG | 1 cut(s) | 196 |
| Sse9I | AATT | 1 cut(s) | 92 |
| TaaI | ACNGT | 1 cut(s) | 136 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TasI | AATT | 1 cut(s) | 92 |
| Tru1I | TTAA | 1 cut(s) | 197 |
| Tru9I | TTAA | 1 cut(s) | 197 |
| TspDTI | ATGAA | 1 cut(s) | 104 |
| Vha464I | CTTAAG | 1 cut(s) | 196 |
| VpaK11BI | GGWCC | 1 cut(s) | 175 |