Rorug02G0496100

Pentatricopeptide repeat-containing protein At1g03560

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003325
Physical Location & Seq
Reverse (-)
62603392 .. 62604103
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0496100.1

Sequence Viewer

Length: 486 bp
ATGGCCTCTTCCCAGCTCTTCTTTGTCCTTGCCATTCTAGCAATTGTTGCCCCTTCAATTTTGGCCACAGATTTTATCGTTGGCGATGACAAAGGTTGGACCATTAATGTTGATTACCAAGCCTGGGCTCAGGGAAAGCTCTTCGTTGTCGGTGACAACCTCGTTTTTAACTACCCAGAAGGAGTTCACAATGTTCTCAAAGTGAATGGAACTGGGTTCCAAGAATGTGCAGCTCCTGCAGGCACTGTGGCATTAACAAGTGGAAAGGATGTGATAAACCTAGCAACCACAGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACTGTCAAGTTGGACCCCAGAAGCTGTTCATAACTGTGATGCCAGCTTCCTTTGCTCCTAGCCCAAGCCCCACTACCTCTGCAGCAACTACCAGTTCTGTTAATGGAGCAAGATTAGGGTGGATGATCGTTGTTTTTGGCATTCTTGGGATATTCATCTAG

Protein Analysis

161

Amino Acids

17.0

Weight (kDa)

7.72

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 9.2e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 57
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 5 cut(s) 16, 139, 233, 349, 371
AluI AGCT 5 cut(s) 16, 139, 233, 349, 371
AlwNI CAGNNNCTG 3 cut(s) 236, 245, 349
AoxI GGCC 2 cut(s) 3, 63
ApeKI GCWGC 2 cut(s) 230, 407
AseI ATTAAT 1 cut(s) 105
Asp700I GAANNNNTTC 2 cut(s) 183, 350
AspS9I GGNCC 2 cut(s) 99, 338
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 2 cut(s) 99, 338
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 242, 419
BciT130I CCWGG 1 cut(s) 124
BfaI CTAG 4 cut(s) 38, 281, 384, 484
BfmI CTRYAG 2 cut(s) 237, 405
BisI GCNGC 2 cut(s) 231, 408
BlsI GCNGC 2 cut(s) 232, 409
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 2 cut(s) 99, 338
BmgT120I GGNCC 2 cut(s) 99, 338
BmiI GGNNCC 2 cut(s) 218, 340
BmrFI CCNGG 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 217, 417
Bse8I GATNNNNATC 1 cut(s) 479
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 274, 453
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 217, 417
BseXI GCAGC 2 cut(s) 242, 419
BseYI CCCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 5, 65
BslI CCNNNNNNNGG 1 cut(s) 124
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 2 cut(s) 5, 65
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 450
BspANI GGCC 2 cut(s) 5, 65
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 218, 340
BspMAI CTGCAG 2 cut(s) 241, 409
BspQI GCTCTTC 2 cut(s) 23, 146
BsrI ACTGG 2 cut(s) 217, 417
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 3 cut(s) 247, 329, 361
Bst6I CTCTTC 3 cut(s) 13, 23, 146
BstAPI GCANNNNNTGC 2 cut(s) 47, 236
BstC8I GCNNGC 2 cut(s) 241, 369
BstDEI CTNAG 2 cut(s) 129, 321
BstF5I GGATG 2 cut(s) 274, 453
BstKTI GATC 1 cut(s) 453
BstMBI GATC 1 cut(s) 450
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 236, 377
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 2 cut(s) 237, 405
BstV1I GCAGC 2 cut(s) 242, 419
BsuRI GGCC 2 cut(s) 5, 65
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 274, 453
BtsIMutI CAGTG 2 cut(s) 243, 325
Cac8I GCNNGC 2 cut(s) 241, 369
CaiI CAGNNNCTG 3 cut(s) 236, 245, 349
Cfr13I GGNCC 2 cut(s) 99, 338
Csp6I GTAC 1 cut(s) 304
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 129, 321
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 3 cut(s) 13, 23, 146
EarI CTCTTC 3 cut(s) 13, 23, 146
Eco24I GRGCYC 1 cut(s) 130
Eco47I GGWCC 2 cut(s) 99, 338
EcoRII CCWGG 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 130
FaiI YATR 1 cut(s) 356
Fnu4HI GCNGC 2 cut(s) 231, 408
FokI GGATG 2 cut(s) 281, 460
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 231, 408
FspBI CTAG 4 cut(s) 38, 281, 384, 484
GluI GCNGC 2 cut(s) 231, 408
GsaI CCCAGC 1 cut(s) 16
HaeIII GGCC 2 cut(s) 5, 65
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 63, 173
HpyCH4III ACNGT 3 cut(s) 247, 329, 361
HpyCH4V TGCA 3 cut(s) 230, 239, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 236, 377
HpyF3I CTNAG 2 cut(s) 129, 321
Kzo9I GATC 1 cut(s) 450
LguI GCTCTTC 2 cut(s) 23, 146
LmnI GCTCC 3 cut(s) 238, 385, 431
Lsp1109I GCAGC 2 cut(s) 242, 419
LweI GCATC 1 cut(s) 354
MaeI CTAG 4 cut(s) 38, 281, 384, 484
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 3 cut(s) 10, 133, 306
MfeI CAATTG 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 42, 57
MluNI TGGCCA 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 77, 316
MnlI CCTC 3 cut(s) 16, 170, 412
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 2 cut(s) 183, 350
MscI TGGCCA 1 cut(s) 65
MseI TTAA 4 cut(s) 105, 168, 254, 426
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 124
MunI CAATTG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 465
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 236, 377
NdeII GATC 1 cut(s) 450
NlaIV GGNNCC 2 cut(s) 218, 340
NmuCI GTSAC 1 cut(s) 152
PciSI GCTCTTC 2 cut(s) 23, 146
PctI GAATGC 1 cut(s) 465
PdmI GAANNNNTTC 2 cut(s) 183, 350
PkrI GCNGC 2 cut(s) 232, 409
PshBI ATTAAT 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 218, 340
PspPI GGNCC 2 cut(s) 99, 338
PstI CTGCAG 2 cut(s) 241, 409
PstNI CAGNNNCTG 3 cut(s) 236, 245, 349
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 359
SapI GCTCTTC 2 cut(s) 23, 146
SaqAI TTAA 4 cut(s) 105, 168, 254, 426
SatI GCNGC 2 cut(s) 231, 408
Sau3AI GATC 1 cut(s) 450
Sau96I GGNCC 2 cut(s) 99, 338
SbfI CCTGCAGG 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 124
SdaI CCTGCAGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 130
SetI ASST 9 cut(s) 18, 97, 141, 162, 235, 282, 351, 373, 404
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 2 cut(s) 237, 405
SinI GGWCC 2 cut(s) 99, 338
SmiMI CAYNNNNRTG 1 cut(s) 359
Sse8387I CCTGCAGG 1 cut(s) 241
Sse9I AATT 2 cut(s) 42, 57
SspMI CTAG 4 cut(s) 38, 281, 384, 484
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 3 cut(s) 247, 329, 361
TasI AATT 2 cut(s) 42, 57
Tru1I TTAA 4 cut(s) 105, 168, 254, 426
Tru9I TTAA 4 cut(s) 105, 168, 254, 426
TscAI CASTG 2 cut(s) 250, 332
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 230, 407
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 343, 469
TspRI CASTG 2 cut(s) 250, 332
VpaK11BI GGWCC 2 cut(s) 99, 338
VspI ATTAAT 1 cut(s) 105
XmnI GAANNNNTTC 2 cut(s) 183, 350
XspI CTAG 4 cut(s) 38, 281, 384, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.