Rh2BG575300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003325
Physical Location & Seq
Reverse (-)
79093942 .. 79094421
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG575300.1

Sequence Viewer

Length: 480 bp
ATGAGAGAGAAGGGGATTGAAATTCCTTCTCACGCGTATAGTTTAGTCATCAATGGGCTATGTAAAGGTGGGAAATGTATGGTTGGGTATGCTGTTTTTGAAGATATGATTGAGAAGGGTTGTAAAGCAAATGTGGCAAACTATACAGCTTTGATCGATTCATATGCAAAATGTGGGTGCATTGAAGAGGCAATGAAGCTTTTCGAGAGGATGAAGAGCGATGGGCTTGAACCAGATGGGGTTACTTATGGGGTTATTGTCAATGGATTATGTAAGAGTGGGAGATTGGATAAGGCCATGGAGTATTTTCAGTTTTGTCAAAACAGCAGAATGGCAGACAATGCTATGTTGTATTCTAGTTTAATCAATGGTCTTGGAAAGCCTGGAAGGGTTGATGAAGCTGAAAGGGTATTCAAAAAGATGATCGTAAATGGTTGTCCACCGGATTCATACTGCTATAATGCCCTTATCGATGCCTAA

Protein Analysis

159

Amino Acids

17.49

Weight (kDa)

5.88

Isoelectric Point (pI)

23.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 3 - 122 2.2e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 11 - 51 4.8e-06 PPR repeat family
TPR_24 PF23276 30 - 140 3.2e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 32 - 88 3.1e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 39 - 72 7.4e-09 PPR repeat
PPR_2 PF13041 44 - 92 1.8e-16 PPR repeat family
PPR PF01535 48 - 76 4.5e-10 PPR repeat
PPR_1 PF12854 74 - 103 2.9e-10 PPR repeat
PPR_2 PF13041 114 - 159 3.2e-12 PPR repeat family
PPR_1 PF12854 114 - 141 5.8e-08 PPR repeat
PPR PF01535 118 - 146 5e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 35
AcsI RAATTY 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 5 cut(s) 20, 101, 185, 230, 415
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 3 cut(s) 149, 199, 401
AluI AGCT 3 cut(s) 149, 199, 401
AoxI GGCC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 200
BccI CCATC 2 cut(s) 215, 230
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 1 cut(s) 384
BfaI CTAG 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 463
Bsa29I ATCGAT 2 cut(s) 156, 471
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 384
BseCI ATCGAT 2 cut(s) 156, 471
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 296
BshVI ATCGAT 2 cut(s) 156, 471
BsiSI CCGG 1 cut(s) 443
BsnI GGCC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 153, 423
Bsp19I CCATGG 1 cut(s) 297
BspANI GGCC 1 cut(s) 296
BspDI ATCGAT 2 cut(s) 156, 471
BspFNI CGCG 1 cut(s) 35
BspQI GCTCTTC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 153, 423
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 384
Bst6I CTCTTC 2 cut(s) 180, 209
BstAPI GCANNNNNTGC 1 cut(s) 341
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 216
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 2 cut(s) 156, 426
BstMBI GATC 2 cut(s) 153, 423
BstMWI GCNNNNNNNGC 2 cut(s) 134, 341
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstUI CGCG 1 cut(s) 35
Bsu15I ATCGAT 2 cut(s) 156, 471
BsuRI GGCC 1 cut(s) 296
BsuTUI ATCGAT 2 cut(s) 156, 471
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 216
ClaI ATCGAT 2 cut(s) 156, 471
CviAII CATG 1 cut(s) 298
CviJI RGCY 7 cut(s) 58, 149, 199, 226, 296, 382, 401
CviKI_1 RGCY 7 cut(s) 58, 149, 199, 226, 296, 382, 401
DpnI GATC 2 cut(s) 155, 425
DpnII GATC 2 cut(s) 153, 423
Eam1104I CTCTTC 2 cut(s) 180, 209
EarI CTCTTC 2 cut(s) 180, 209
Eco130I CCWWGG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 301
FatI CATG 1 cut(s) 297
FauNDI CATATG 1 cut(s) 163
FokI GGATG 1 cut(s) 223
FspBI CTAG 1 cut(s) 357
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 443
Hin1II CATG 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 2 cut(s) 158, 446
HpaII CCGG 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 440
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 440
HpyAV CCTTC 4 cut(s) 4, 36, 109, 381
HpyCH4V TGCA 2 cut(s) 167, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 341
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 2 cut(s) 153, 423
LguI GCTCTTC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 246, 369, 396, 456
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 155, 425
MboI GATC 2 cut(s) 153, 423
MboII GAAGA 3 cut(s) 113, 197, 226
MluCI AATT 1 cut(s) 21
MluI ACGCGT 1 cut(s) 33
MnlI CCTC 2 cut(s) 181, 201
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 1 cut(s) 362
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 134, 341
NcoI CCATGG 1 cut(s) 297
NdeI CATATG 1 cut(s) 163
NdeII GATC 2 cut(s) 153, 423
NlaIII CATG 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 158, 446
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 362
Sau3AI GATC 2 cut(s) 153, 423
ScrFI CCNGG 1 cut(s) 384
SetI ASST 4 cut(s) 70, 151, 201, 403
SfaNI GCATC 1 cut(s) 463
Sse9I AATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 1 cut(s) 297
TaqI TCGA 3 cut(s) 156, 204, 471
TasI AATT 1 cut(s) 21
TfiI GAWTC 2 cut(s) 158, 446
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TspDTI ATGAA 5 cut(s) 150, 209, 227, 411, 438
XapI RAATTY 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.