Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003325

Physical Location & Seq

Genomic Coordinates Reverse (-)

70496084 .. 70496614

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTTGTAAAATGGGGGAGCTTGGTTTGGTTGCTAATCAGTTTACATATACTGTGTTGATTGATGGGCTTTTCAAGAAAGGTCGGAATAAAGAAGGGTTTGAGTTGTATGAGAAGATGAAGATTAAGGGGGTTGTTCCTAACATGCGTACTTATACTTGTTTGATCAGTGGGTGTTGCAACGATGGAAAAATGAATAGTGCCTTCAACCTGTTCGATGAAATGAGTGAGAGAGGAATGGCCTGCAATGTGGTCACATATAACATCCTAATTGGTGGGTTGTGTCGAGAAATGAGGGTTTGGGAAGCTGAGAAGTTTGTGAATGAGATGAAGAGAGATGGTATTAGTCCAAGTGTAGTTACTTTCAACACTTTGATTGATGGGTTTTGTGGTCTTGGAAAGTTGGACAAGGCGTTGAGTTTGTTTGATCAGTTGAAGTCGAGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1900864 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

149

Amino Acids

16.68

Weight (kDa)

8.14

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	2 - 83	3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	4 - 56	5.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	9 - 41	1.6e-08	PPR repeat
PPR_2	PF13041	13 - 61	8.1e-18	PPR repeat family
PPR	PF01535	15 - 45	3.3e-07	PPR repeat
PPR_3	PF13812	36 - 92	1e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	43 - 76	6.5e-14	PPR repeat
PPR_2	PF13041	51 - 96	2.1e-19	PPR repeat family
PPR	PF01535	51 - 79	3.3e-09	PPR repeat
TPR_24	PF23276	52 - 144	8.2e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	66 - 148	4.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	78 - 111	1.8e-13	PPR repeat
PPR_2	PF13041	83 - 130	6.3e-19	PPR repeat family
PPR	PF01535	85 - 115	8.9e-09	PPR repeat
PPR_3	PF13812	107 - 148	1.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	113 - 145	7e-13	PPR repeat
PPR_2	PF13041	117 - 149	2.1e-09	PPR repeat family
PPR	PF01535	120 - 149	9.3e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03560
fragaria_vesca	FvH4_6g45000
malus_domestica	MD09G1090900.v1.1 MD17G1080900.v1.1
prunus_persica	Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1
pyrus_communis	pycom03g08050 pycom09g01610 pycom17g07920
rosa_chinensis	RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621
rosa_laevigata	RLG00000021332
rosa_multiflora	Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088200 Rroxscaffold_5G00386740
rosa_rugosa	Rorug02G0496100 Rorug04G0369800 Rorug04G0369900
rosa_samantha	Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600
rosa_wichuraiana	Rw2G046560 Rw4G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	76, 208, 367, 436
AluBI	AGCT	2 cut(s)	22, 308
AluI	AGCT	2 cut(s)	22, 308
AoxI	GGCC	1 cut(s)	240
BccI	CCATC	4 cut(s)	59, 179, 332, 374
BclI	TGATCA	2 cut(s)	165, 427
Bse3DI	GCAATG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	165, 427
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	253
BssMI	GATC	2 cut(s)	165, 427
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	2 cut(s)	168, 430
BstMBI	GATC	2 cut(s)	165, 427
BstNSI	RCATGY	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	4 cut(s)	22, 70, 242, 308
CviKI_1	RGCY	4 cut(s)	22, 70, 242, 308
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	167, 429
DpnII	GATC	2 cut(s)	165, 427
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
FaeI	CATG	1 cut(s)	148
FaiI	YATR	7 cut(s)	49, 51, 111, 146, 156, 259, 261
FatI	CATG	1 cut(s)	144
FbaI	TGATCA	2 cut(s)	165, 427
FokI	GGATG	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	76, 287
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	2 cut(s)	89, 214
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	180, 246
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	148
Ksp22I	TGATCA	2 cut(s)	165, 427
Kzo9I	GATC	2 cut(s)	165, 427
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	2 cut(s)	224, 256
MaeIII	GTNAC	2 cut(s)	253, 358
MalI	GATC	2 cut(s)	167, 429
MboI	GATC	2 cut(s)	165, 427
MboII	GAAGA	3 cut(s)	127, 133, 343
MluCI	AATT	1 cut(s)	270
MmeI	TCCRAC	2 cut(s)	65, 384
MnlI	CCTC	2 cut(s)	227, 288
MseI	TTAA	1 cut(s)	126
NdeII	GATC	2 cut(s)	165, 427
NlaIII	CATG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	165, 427
SetI	ASST	4 cut(s)	24, 85, 213, 310
Sse9I	AATT	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	216, 286, 440
TasI	AATT	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	4 cut(s)	134, 209, 234, 344
TspRI	CASTG	1 cut(s)	175
XceI	RCATGY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.