Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003325

Physical Location & Seq

Genomic Coordinates Forward (+)

54099856 .. 54100283

Gene Structure 428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0369900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTAATGAGCAGATAGCCTTATCTGAAGGGGCCCTATCTGAGCATGCTCAAATGGTCCAAGATTTTGAGTCACGGAGAAGAGATCTTGAGATTGATATGCAGAATTGGCAGGATAAGATGGGAGTTGCTGATAAGCAAAGAAAAGAGCTATTATCTGAAAGGAATATGAATGAAAAGGAAAGGGAAGTGCTTGCACTGCAGCAGAAGGAGCTGGAAGCGAACCAACTTGAAACGCGAGAAGACATAGATCAGCTTGACAAGCTTAGCAAGAAGATCAAGTGCCAGAGGGAACAGCTGATTGAGGAAAGAGGTCGCTTTCTTGCCTTTGTACCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

113

Amino Acids

13.41

Weight (kDa)

4.94

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03560
fragaria_vesca	FvH4_6g45000
malus_domestica	MD09G1090900.v1.1 MD17G1080900.v1.1
prunus_persica	Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1
pyrus_communis	pycom03g08050 pycom09g01610 pycom17g07920
rosa_chinensis	RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621
rosa_laevigata	RLG00000021332
rosa_multiflora	Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088200 Rroxscaffold_5G00386740
rosa_rugosa	Rorug02G0496100 Rorug04G0369800 Rorug04G0369900
rosa_samantha	Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600
rosa_wichuraiana	Rw2G046560 Rw4G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	5 cut(s)	151, 214, 256, 265, 298
AluI	AGCT	5 cut(s)	151, 214, 256, 265, 298
AoxI	GGCC	1 cut(s)	33
ApaI	GGGCCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	202
AspS9I	GGNCC	3 cut(s)	33, 34, 58
AvaII	GGWCC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	3 cut(s)	33, 34, 58
BmiI	GGNNCC	2 cut(s)	34, 35
BpiI	GAAGAC	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	35
Bsp120I	GGGCCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	85, 250, 276
Bsp1720I	GCTNAGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	34, 35
BspMAI	CTGCAG	1 cut(s)	204
BssMI	GATC	3 cut(s)	85, 250, 276
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	48, 195
BstDEI	CTNAG	2 cut(s)	42, 266
BstFNI	CGCG	1 cut(s)	238
BstKTI	GATC	3 cut(s)	88, 253, 279
BstMBI	GATC	3 cut(s)	85, 250, 276
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 199, 211, 262
BstNSI	RCATGY	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	37
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	2 cut(s)	48, 195
Cfr13I	GGNCC	3 cut(s)	33, 34, 58
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	47, 336
CviJI	RGCY	7 cut(s)	20, 35, 151, 214, 256, 265, 298
CviKI_1	RGCY	7 cut(s)	20, 35, 151, 214, 256, 265, 298
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	2 cut(s)	42, 266
DpnI	GATC	3 cut(s)	87, 252, 278
DpnII	GATC	3 cut(s)	85, 250, 276
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	48
EcoO109I	RGGNCCY	2 cut(s)	33, 34
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	2 cut(s)	50, 339
FaiI	YATR	5 cut(s)	48, 101, 170, 248, 337
FatI	CATG	2 cut(s)	46, 335
Fnu4HI	GCNGC	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	50, 339
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	71
Hpy188I	TCNGA	3 cut(s)	28, 43, 160
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	23, 202
HpyCH4V	TGCA	3 cut(s)	103, 197, 202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 199, 211, 262
HpyF3I	CTNAG	2 cut(s)	42, 266
Hsp92II	CATG	2 cut(s)	50, 339
Kzo9I	GATC	3 cut(s)	85, 250, 276
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	3 cut(s)	98, 200, 299
Lsp1109I	GCAGC	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	3 cut(s)	87, 252, 278
MboI	GATC	3 cut(s)	85, 250, 276
MboII	GAAGA	3 cut(s)	93, 254, 286
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	3 cut(s)	282, 298, 305
MspA1I	CMGCKG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	4 cut(s)	109, 199, 211, 262
NdeII	GATC	3 cut(s)	85, 250, 276
NlaIII	CATG	2 cut(s)	50, 339
NlaIV	GGNNCC	2 cut(s)	34, 35
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	34, 35
PspOMI	GGGCCC	1 cut(s)	33
PspPI	GGNCC	3 cut(s)	33, 34, 58
PstI	CTGCAG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	85, 250, 276
Sau96I	GGNCC	3 cut(s)	33, 34, 58
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	153, 216, 258, 267, 300, 316
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	50
Sse9I	AATT	1 cut(s)	106
TasI	AATT	1 cut(s)	106
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	185, 189
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	58
XceI	RCATGY	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.