Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007544.1

Orthogroup ID

OG0003325

Physical Location & Seq

Genomic Coordinates Forward (+)

13013 .. 14641

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007544.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ctgtctcccaatttcgttgcatatgtgttgaaatctgatgatctccaaggaaagcccgagactgctctacagtttttctcctgggccggtaagcaaaagaagtatcatcataagcttgaatgctatgtgtctttgattgagcttttgtgtttgtgtggtgatttggataggattagatgtgttgttgttgagcttaaaaatatgaactttttgatgaattcgaatgcggcgaattgtttgattaagagttttggctgtcttggaatggttgaggagttgttgtgggtttggcgtgggatgaaggagaatgggattgagcctagtttgtatacttataactttttggtgaatggattggtgaactcaatgtttattgaatccgcggagcgggttttcgaggttatggaaggtgggaagattgtgcctgacattgtgacttataatacaatgatcaaagggtattgtaaggcagggaaaacccagaaggcaatggagaagtttagggatatggaggggaggaatgtggaggctgataagattacttatatgactttgatgcaggggtgctattcggaaggagatttcgattcatgtttgagtctgtaccaggaaatgagagagaaggggattgaaattccatctcacgcgtatagtttagtcatcaatgggctatgtaaaggtgggaaatgtatggttgggtatgctgtttttgaagatatgattgagaagggttgtaaagcaaatgtggcaaactatacagctttgatcgattcatatgcaaaatgtgggtgcattgaagaggcaatgaagcttttcgagaggatgaagagcgatgggcttgaaccagatggggttacttatggggttattgtcaatggattatgtaagagtgggagattggagaaggccatggagtattttcagttttgtcaaaacagcagaatggcagacaatgctatgttgtattctagtttaatcgatggtcttggaaaggctggaagggttgatgaagctgaaagggtattcgaaaagatgatcgaaaagggttgtccaccggattcatactgctataatgcccttatcgatgccctagcaaaatgtggaaaaactgatgaagctttagcactctttaagaaaatggaaaaagaaggttgtgatcagaccgtttatacatacacaatactcattgatggactatttaaggagcataggaatgaagaggcattgaagctgtgggacatgatgatcgataaaggcatcacaccaactgctgcttcattcagagctctctcaattgggctttgtctctcaggcaaagtagccagggcctgcaagattttggatgacctagcaccaatgggcgtaattcctgagacagcttttgaagatatgatcaatgtgttgtgcaaagctggtcgtgtcaaggaagcttgcaaattggctgatggcattgtggatagaggtagggaaataccaggaagaattcgaactgttctaatcaatgccttgaggaaaacagggaatgcagatttagctatgaagttgatgcatagtaagattggtattgggtatgaccgatggggtagtgtcaaaaagcgagtgaagttccgtattctcattgacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

542

Amino Acids

60.67

Weight (kDa)

7.02

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03560
fragaria_vesca	FvH4_6g45000
malus_domestica	MD09G1090900.v1.1 MD17G1080900.v1.1
prunus_persica	Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1
pyrus_communis	pycom03g08050 pycom09g01610 pycom17g07920
rosa_chinensis	RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621
rosa_laevigata	RLG00000021332
rosa_multiflora	Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088200 Rroxscaffold_5G00386740
rosa_rugosa	Rorug02G0496100 Rorug04G0369800 Rorug04G0369900
rosa_samantha	Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600
rosa_wichuraiana	Rw2G046560 Rw4G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	336, 441
AccBSI	CCGCTC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	329
AccII	CGCG	2 cut(s)	383, 647
AciI	CCGC	4 cut(s)	227, 381, 383, 388
AcsI	RAATTY	3 cut(s)	217, 633, 1482
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	1 cut(s)	387
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	9 cut(s)	31, 119, 377, 632, 713, 797, 842, 1228, 1385
AjnI	CCWGG	4 cut(s)	80, 606, 1322, 1474
AjuI	GAANNNNNNNTTGG	2 cut(s)	1258, 1290
Alw21I	GWGCWC	1 cut(s)	1288
Alw26I	GTCTC	4 cut(s)	9, 53, 1310, 1367
AlwNI	CAGNNNCTG	1 cut(s)	1329
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	3 cut(s)	84, 906, 1326
ApeKI	GCWGC	1 cut(s)	1271
ApoI	RAATTY	3 cut(s)	217, 633, 1482
Asp700I	GAANNNNTTC	1 cut(s)	812
AspS9I	GGNCC	2 cut(s)	84, 1326
AsuHPI	GGTGA	3 cut(s)	170, 358, 370
AsuII	TTCGAA	3 cut(s)	221, 1026, 1486
AvaI	CYCGRG	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	1288
Bbv12I	GWGCWC	1 cut(s)	1288
BbvI	GCAGC	1 cut(s)	1258
BccI	CCATC	7 cut(s)	646, 827, 842, 974, 1184, 1439, 1572
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	4 cut(s)	82, 608, 1324, 1476
BclI	TGATCA	3 cut(s)	450, 1156, 1392
BcoDI	GTCTC	4 cut(s)	9, 53, 1310, 1367
BfaI	CTAG	4 cut(s)	321, 969, 1091, 1349
BfmI	CTRYAG	1 cut(s)	68
BisI	GCNGC	2 cut(s)	228, 1272
BlsI	GCNGC	2 cut(s)	229, 1273
Bme1390I	CCNGG	4 cut(s)	82, 608, 1324, 1476
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	84, 1326
BmrFI	CCNGG	4 cut(s)	82, 608, 1324, 1476
BmsI	GCATC	4 cut(s)	546, 1075, 1266, 1536
Bpu14I	TTCGAA	3 cut(s)	221, 1026, 1486
BpuEI	CTTGAG	1 cut(s)	1528
Bsa29I	ATCGAT	4 cut(s)	768, 978, 1083, 1248
BsaJI	CCNNGG	5 cut(s)	46, 81, 381, 909, 1323
BsaWI	WCCGGW	1 cut(s)	1054
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse118I	RCCGGY	1 cut(s)	86
Bse3DI	GCAATG	2 cut(s)	495, 810
BseBI	CCWGG	4 cut(s)	82, 608, 1324, 1476
BseCI	ATCGAT	4 cut(s)	768, 978, 1083, 1248
BseDI	CCNNGG	5 cut(s)	46, 81, 381, 909, 1323
BseGI	GGATG	3 cut(s)	303, 828, 1348
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMI	GCAATG	2 cut(s)	495, 810
BseMII	CTCAG	2 cut(s)	1323, 1362
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	1258
Bsh1236I	CGCG	2 cut(s)	383, 647
BshFI	GGCC	3 cut(s)	86, 908, 1328
BshVI	ATCGAT	4 cut(s)	768, 978, 1083, 1248
BsiHKAI	GWGCWC	1 cut(s)	1288
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	87, 1055
BslFI	GGGAC	1 cut(s)	1250
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	4 cut(s)	9, 53, 1310, 1367
BsmFI	GGGAC	1 cut(s)	1250
BsmI	GAATGC	3 cut(s)	125, 229, 1528
BsnI	GGCC	3 cut(s)	86, 908, 1328
BsoBI	CYCGRG	1 cut(s)	56
Bsp119I	TTCGAA	3 cut(s)	221, 1026, 1486
Bsp1286I	GDGCHC	1 cut(s)	1288
Bsp143I	GATC	7 cut(s)	40, 450, 765, 1035, 1156, 1245, 1392
Bsp19I	CCATGG	1 cut(s)	909
BspACI	CCGC	4 cut(s)	227, 381, 383, 388
BspANI	GGCC	3 cut(s)	86, 908, 1328
BspCNI	CTCAG	2 cut(s)	1322, 1363
BspDI	ATCGAT	4 cut(s)	768, 978, 1083, 1248
BspFNI	CGCG	2 cut(s)	383, 647
BspQI	GCTCTTC	1 cut(s)	821
BspT104I	TTCGAA	3 cut(s)	221, 1026, 1486
BsrBI	CCGCTC	1 cut(s)	388
BsrDI	GCAATG	2 cut(s)	495, 810
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	5 cut(s)	46, 81, 381, 909, 1323
BssMI	GATC	7 cut(s)	40, 450, 765, 1035, 1156, 1245, 1392
BssNAI	GTATAC	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	46, 909
Bst1107I	GTATAC	1 cut(s)	330
Bst2UI	CCWGG	4 cut(s)	82, 608, 1324, 1476
Bst4CI	ACNGT	3 cut(s)	72, 1165, 1492
Bst6I	CTCTTC	3 cut(s)	792, 821, 1212
BstAPI	GCANNNNNTGC	1 cut(s)	953
BstBI	TTCGAA	3 cut(s)	221, 1026, 1486
BstC8I	GCNNGC	2 cut(s)	1330, 1432
BstDEI	CTNAG	2 cut(s)	1309, 1371
BstDSI	CCRYGG	2 cut(s)	381, 909
BstF5I	GGATG	3 cut(s)	303, 828, 1348
BstFNI	CGCG	2 cut(s)	383, 647
BstKTI	GATC	7 cut(s)	43, 453, 768, 1038, 1159, 1248, 1395
BstMAI	GTCTC	4 cut(s)	9, 53, 1310, 1367
BstMBI	GATC	7 cut(s)	40, 450, 765, 1035, 1156, 1245, 1392
BstMWI	GCNNNNNNNGC	3 cut(s)	746, 953, 1532
BstNI	CCWGG	4 cut(s)	82, 608, 1324, 1476
BstSCI	CCNGG	4 cut(s)	80, 606, 1322, 1474
BstSFI	CTRYAG	1 cut(s)	68
BstUI	CGCG	2 cut(s)	383, 647
BstV1I	GCAGC	1 cut(s)	1258
BstZ17I	GTATAC	1 cut(s)	330
Bsu15I	ATCGAT	4 cut(s)	768, 978, 1083, 1248
BsuRI	GGCC	3 cut(s)	86, 908, 1328
BsuTUI	ATCGAT	4 cut(s)	768, 978, 1083, 1248
BtgI	CCRYGG	2 cut(s)	381, 909
BtgZI	GCGATG	1 cut(s)	846
BtsCI	GGATG	3 cut(s)	303, 828, 1348
Cac8I	GCNNGC	2 cut(s)	1330, 1432
CaiI	CAGNNNCTG	1 cut(s)	1329
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	84, 1326
Cfr42I	CCGCGG	1 cut(s)	384
ClaI	ATCGAT	4 cut(s)	768, 978, 1083, 1248
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	3 cut(s)	591, 910, 1240
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	2 cut(s)	1309, 1371
DpnI	GATC	7 cut(s)	42, 452, 767, 1037, 1158, 1247, 1394
DpnII	GATC	7 cut(s)	40, 450, 765, 1035, 1156, 1245, 1392
Eam1104I	CTCTTC	3 cut(s)	792, 821, 1212
EarI	CTCTTC	3 cut(s)	792, 821, 1212
Ecl136II	GAGCTC	1 cut(s)	1286
Eco130I	CCWWGG	2 cut(s)	46, 909
Eco24I	GRGCYC	1 cut(s)	1288
Eco53kI	GAGCTC	1 cut(s)	1286
Eco88I	CYCGRG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	1286
EcoO109I	RGGNCCY	1 cut(s)	1326
EcoRI	GAATTC	2 cut(s)	217, 1482
EcoRII	CCWGG	4 cut(s)	80, 606, 1322, 1474
EcoT14I	CCWWGG	2 cut(s)	46, 909
EcoT22I	ATGCAT	1 cut(s)	1551
EcoT38I	GRGCYC	1 cut(s)	1288
ErhI	CCWWGG	2 cut(s)	46, 909
FaeI	CATG	3 cut(s)	594, 913, 1243
FaqI	GGGAC	1 cut(s)	1250
FatI	CATG	3 cut(s)	590, 909, 1239
FauI	CCCGC	1 cut(s)	381
FauNDI	CATATG	2 cut(s)	22, 775
FbaI	TGATCA	3 cut(s)	450, 1156, 1392
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	2 cut(s)	228, 1272
FokI	GGATG	3 cut(s)	310, 835, 1355
FriOI	GRGCYC	1 cut(s)	1288
Fsp4HI	GCNGC	2 cut(s)	228, 1272
FspBI	CTAG	4 cut(s)	321, 969, 1091, 1349
GluI	GCNGC	2 cut(s)	228, 1272
HaeIII	GGCC	3 cut(s)	86, 908, 1328
HapII	CCGG	2 cut(s)	87, 1055
Hin1II	CATG	3 cut(s)	594, 913, 1243
HindIII	AAGCTT	4 cut(s)	113, 809, 1116, 1428
HinfI	GANTC	5 cut(s)	377, 587, 598, 770, 1058
HpaII	CCGG	2 cut(s)	87, 1055
HphI	GGTGA	3 cut(s)	170, 358, 370
Hpy166II	GTNNAC	3 cut(s)	330, 361, 1052
Hpy188I	TCNGA	4 cut(s)	37, 574, 1161, 1283
Hpy188III	TCNNGA	2 cut(s)	817, 1370
Hpy8I	GTNNAC	3 cut(s)	330, 361, 1052
HpyAV	CCTTC	9 cut(s)	295, 401, 478, 569, 616, 721, 898, 993, 1142
HpyCH4III	ACNGT	3 cut(s)	72, 1165, 1492
HpyCH4V	TGCA	9 cut(s)	20, 559, 779, 792, 1332, 1407, 1434, 1526, 1549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	746, 953, 1532
HpyF3I	CTNAG	2 cut(s)	1309, 1371
Hsp92II	CATG	3 cut(s)	594, 913, 1243
Ksp22I	TGATCA	3 cut(s)	450, 1156, 1392
KspI	CCGCGG	1 cut(s)	384
Kzo9I	GATC	7 cut(s)	40, 450, 765, 1035, 1156, 1245, 1392
LguI	GCTCTTC	1 cut(s)	821
LmnI	GCTCC	2 cut(s)	385, 1204
Lsp1109I	GCAGC	1 cut(s)	1258
LweI	GCATC	4 cut(s)	546, 1075, 1266, 1536
MaeI	CTAG	4 cut(s)	321, 969, 1091, 1349
MaeIII	GTNAC	2 cut(s)	433, 853
MalI	GATC	7 cut(s)	42, 452, 767, 1037, 1158, 1247, 1394
MbiI	CCGCTC	1 cut(s)	388
MboI	GATC	7 cut(s)	40, 450, 765, 1035, 1156, 1245, 1392
MboII	GAAGA	7 cut(s)	427, 725, 809, 838, 1229, 1397, 1491
MfeI	CAATTG	1 cut(s)	1293
MhlI	GDGCHC	1 cut(s)	1288
MluCI	AATT	8 cut(s)	10, 217, 232, 633, 1293, 1365, 1436, 1482
MluI	ACGCGT	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	607
Mph1103I	ATGCAT	1 cut(s)	1551
MroXI	GAANNNNTTC	1 cut(s)	812
MseI	TTAA	5 cut(s)	195, 243, 974, 1131, 1200
MslI	CAYNNNNRTG	1 cut(s)	1212
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	2 cut(s)	87, 1055
MspR9I	CCNGG	4 cut(s)	82, 608, 1324, 1476
MunI	CAATTG	1 cut(s)	1293
Mva1269I	GAATGC	3 cut(s)	125, 229, 1528
MvaI	CCWGG	4 cut(s)	82, 608, 1324, 1476
MvnI	CGCG	2 cut(s)	383, 647
MwoI	GCNNNNNNNGC	3 cut(s)	746, 953, 1532
NcoI	CCATGG	1 cut(s)	909
NdeI	CATATG	2 cut(s)	22, 775
NdeII	GATC	7 cut(s)	40, 450, 765, 1035, 1156, 1245, 1392
NlaIII	CATG	3 cut(s)	594, 913, 1243
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	1551
NspV	TTCGAA	3 cut(s)	221, 1026, 1486
PciSI	GCTCTTC	1 cut(s)	821
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	3 cut(s)	125, 229, 1528
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	4 cut(s)	377, 587, 770, 1058
PkrI	GCNGC	2 cut(s)	229, 1273
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
PsiI	TTATAA	2 cut(s)	336, 441
Psp124BI	GAGCTC	1 cut(s)	1288
Psp6I	CCWGG	4 cut(s)	80, 606, 1322, 1474
PspGI	CCWGG	4 cut(s)	80, 606, 1322, 1474
PspPI	GGNCC	2 cut(s)	84, 1326
PstNI	CAGNNNCTG	1 cut(s)	1329
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	1212
SacI	GAGCTC	1 cut(s)	1288
SacII	CCGCGG	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	821
SaqAI	TTAA	5 cut(s)	195, 243, 974, 1131, 1200
SatI	GCNGC	2 cut(s)	228, 1272
Sau3AI	GATC	7 cut(s)	40, 450, 765, 1035, 1156, 1245, 1392
Sau96I	GGNCC	2 cut(s)	84, 1326
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	4 cut(s)	82, 608, 1324, 1476
SduI	GDGCHC	1 cut(s)	1288
SfaNI	GCATC	4 cut(s)	546, 1075, 1266, 1536
SfcI	CTRYAG	1 cut(s)	68
Sfr303I	CCGCGG	1 cut(s)	384
SfuI	TTCGAA	3 cut(s)	221, 1026, 1486
SgrBI	CCGCGG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	1212
SmlI	CTYRAG	1 cut(s)	1507
SmoI	CTYRAG	1 cut(s)	1507
Sse9I	AATT	8 cut(s)	10, 217, 232, 633, 1293, 1365, 1436, 1482
SsiI	CCGC	4 cut(s)	227, 381, 383, 388
SspMI	CTAG	4 cut(s)	321, 969, 1091, 1349
SstI	GAGCTC	1 cut(s)	1288
StyD4I	CCNGG	4 cut(s)	80, 606, 1322, 1474
StyI	CCWWGG	2 cut(s)	46, 909
TaaI	ACNGT	3 cut(s)	72, 1165, 1492
TaqII	GACCGA	1 cut(s)	1590
TasI	AATT	8 cut(s)	10, 217, 232, 633, 1293, 1365, 1436, 1482
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	4 cut(s)	377, 587, 770, 1058
Tru1I	TTAA	5 cut(s)	195, 243, 974, 1131, 1200
Tru9I	TTAA	5 cut(s)	195, 243, 974, 1131, 1200
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	1271
Tsp45I	GTSAC	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	1598
XapI	RAATTY	3 cut(s)	217, 633, 1482
XmiI	GTMKAC	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	4 cut(s)	321, 969, 1091, 1349
Zsp2I	ATGCAT	1 cut(s)	1551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.