pentatricopeptide
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G03560 |
| fragaria_vesca | FvH4_6g45000 |
| malus_domestica | MD09G1090900.v1.1 MD17G1080900.v1.1 |
| prunus_persica | Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1 |
| pyrus_communis | pycom03g08050 pycom09g01610 pycom17g07920 |
| rosa_chinensis | RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621 |
| rosa_laevigata | RLG00000021332 |
| rosa_multiflora | Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00088200 Rroxscaffold_5G00386740 |
| rosa_rugosa | Rorug02G0496100 Rorug04G0369800 Rorug04G0369900 |
| rosa_samantha | Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600 |
| rosa_wichuraiana | Rw2G046560 Rw4G036860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 342 |
| AgsI | TTSAA | 2 cut(s) | 91, 245 |
| AjnI | CCWGG | 2 cut(s) | 185, 334 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 121, 153 |
| AluBI | AGCT | 6 cut(s) | 94, 149, 239, 272, 290, 395 |
| AluI | AGCT | 6 cut(s) | 94, 149, 239, 272, 290, 395 |
| Alw21I | GWGCWC | 1 cut(s) | 151 |
| Alw26I | GTCTC | 2 cut(s) | 173, 227 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 192 |
| AoxI | GGCC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 1 cut(s) | 134 |
| ApoI | RAATTY | 1 cut(s) | 342 |
| AspS9I | GGNCC | 1 cut(s) | 189 |
| AsuII | TTCGAA | 1 cut(s) | 346 |
| BanII | GRGCYC | 1 cut(s) | 151 |
| Bbv12I | GWGCWC | 1 cut(s) | 151 |
| BbvI | GCAGC | 1 cut(s) | 121 |
| BccI | CCATC | 3 cut(s) | 47, 299, 432 |
| BciT130I | CCWGG | 2 cut(s) | 187, 336 |
| BclI | TGATCA | 2 cut(s) | 19, 252 |
| BcoDI | GTCTC | 2 cut(s) | 173, 227 |
| BfaI | CTAG | 1 cut(s) | 212 |
| BisI | GCNGC | 1 cut(s) | 135 |
| BlsI | GCNGC | 1 cut(s) | 136 |
| Bme1390I | CCNGG | 2 cut(s) | 187, 336 |
| BmgT120I | GGNCC | 1 cut(s) | 189 |
| BmrFI | CCNGG | 2 cut(s) | 187, 336 |
| BmsI | GCATC | 2 cut(s) | 129, 396 |
| Bpu14I | TTCGAA | 1 cut(s) | 346 |
| BpuEI | CTTGAG | 1 cut(s) | 388 |
| Bsa29I | ATCGAT | 1 cut(s) | 111 |
| BsaJI | CCNNGG | 1 cut(s) | 186 |
| Bse3DI | GCAATG | 1 cut(s) | 388 |
| BseBI | CCWGG | 2 cut(s) | 187, 336 |
| BseCI | ATCGAT | 1 cut(s) | 111 |
| BseDI | CCNNGG | 1 cut(s) | 186 |
| BseGI | GGATG | 1 cut(s) | 211 |
| BseMI | GCAATG | 1 cut(s) | 388 |
| BseMII | CTCAG | 2 cut(s) | 186, 222 |
| BseXI | GCAGC | 1 cut(s) | 121 |
| BshFI | GGCC | 1 cut(s) | 191 |
| BshVI | ATCGAT | 1 cut(s) | 111 |
| BsiHKAI | GWGCWC | 1 cut(s) | 151 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BsmAI | GTCTC | 2 cut(s) | 173, 227 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsnI | GGCC | 1 cut(s) | 191 |
| Bsp119I | TTCGAA | 1 cut(s) | 346 |
| Bsp1286I | GDGCHC | 1 cut(s) | 151 |
| Bsp143I | GATC | 3 cut(s) | 19, 108, 252 |
| BspANI | GGCC | 1 cut(s) | 191 |
| BspCNI | CTCAG | 2 cut(s) | 185, 223 |
| BspDI | ATCGAT | 1 cut(s) | 111 |
| BspT104I | TTCGAA | 1 cut(s) | 346 |
| BsrDI | GCAATG | 1 cut(s) | 388 |
| BssECI | CCNNGG | 1 cut(s) | 186 |
| BssMI | GATC | 3 cut(s) | 19, 108, 252 |
| Bst2UI | CCWGG | 2 cut(s) | 187, 336 |
| Bst4CI | ACNGT | 2 cut(s) | 28, 352 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstBI | TTCGAA | 1 cut(s) | 346 |
| BstC8I | GCNNGC | 2 cut(s) | 193, 292 |
| BstDEI | CTNAG | 2 cut(s) | 172, 231 |
| BstF5I | GGATG | 1 cut(s) | 211 |
| BstKTI | GATC | 3 cut(s) | 22, 111, 255 |
| BstMAI | GTCTC | 2 cut(s) | 173, 227 |
| BstMBI | GATC | 3 cut(s) | 19, 108, 252 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 392 |
| BstNI | CCWGG | 2 cut(s) | 187, 336 |
| BstSCI | CCNGG | 2 cut(s) | 185, 334 |
| BstV1I | GCAGC | 1 cut(s) | 121 |
| Bsu15I | ATCGAT | 1 cut(s) | 111 |
| BsuRI | GGCC | 1 cut(s) | 191 |
| BsuTUI | ATCGAT | 1 cut(s) | 111 |
| BtsCI | GGATG | 1 cut(s) | 211 |
| Cac8I | GCNNGC | 2 cut(s) | 193, 292 |
| CaiI | CAGNNNCTG | 1 cut(s) | 192 |
| Cfr13I | GGNCC | 1 cut(s) | 189 |
| ClaI | ATCGAT | 1 cut(s) | 111 |
| CviAII | CATG | 1 cut(s) | 103 |
| CviJI | RGCY | 9 cut(s) | 94, 149, 163, 185, 191, 239, 272, 290, 395 |
| CviKI_1 | RGCY | 9 cut(s) | 94, 149, 163, 185, 191, 239, 272, 290, 395 |
| DdeI | CTNAG | 2 cut(s) | 172, 231 |
| DpnI | GATC | 3 cut(s) | 21, 110, 254 |
| DpnII | GATC | 3 cut(s) | 19, 108, 252 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Ecl136II | GAGCTC | 1 cut(s) | 149 |
| Eco24I | GRGCYC | 1 cut(s) | 151 |
| Eco53kI | GAGCTC | 1 cut(s) | 149 |
| EcoICRI | GAGCTC | 1 cut(s) | 149 |
| EcoO109I | RGGNCCY | 1 cut(s) | 189 |
| EcoRI | GAATTC | 1 cut(s) | 342 |
| EcoRII | CCWGG | 2 cut(s) | 185, 334 |
| EcoT22I | ATGCAT | 1 cut(s) | 411 |
| EcoT38I | GRGCYC | 1 cut(s) | 151 |
| FaeI | CATG | 1 cut(s) | 106 |
| FaiI | YATR | 8 cut(s) | 33, 37, 72, 104, 251, 398, 411, 432 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FatI | CATG | 1 cut(s) | 102 |
| FbaI | TGATCA | 2 cut(s) | 19, 252 |
| Fnu4HI | GCNGC | 1 cut(s) | 135 |
| FokI | GGATG | 1 cut(s) | 218 |
| FriOI | GRGCYC | 1 cut(s) | 151 |
| Fsp4HI | GCNGC | 1 cut(s) | 135 |
| FspBI | CTAG | 1 cut(s) | 212 |
| GluI | GCNGC | 1 cut(s) | 135 |
| HaeIII | GGCC | 1 cut(s) | 191 |
| Hin1II | CATG | 1 cut(s) | 106 |
| HindIII | AAGCTT | 1 cut(s) | 288 |
| Hpy188I | TCNGA | 2 cut(s) | 24, 146 |
| HpyAV | CCTTC | 1 cut(s) | 5 |
| HpyCH4III | ACNGT | 2 cut(s) | 28, 352 |
| HpyCH4V | TGCA | 5 cut(s) | 195, 267, 294, 386, 409 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 392 |
| HpyF3I | CTNAG | 2 cut(s) | 172, 231 |
| Hsp92II | CATG | 1 cut(s) | 106 |
| Ksp22I | TGATCA | 2 cut(s) | 19, 252 |
| Kzo9I | GATC | 3 cut(s) | 19, 108, 252 |
| LmnI | GCTCC | 1 cut(s) | 67 |
| LpnPI | CCDG | 8 cut(s) | 159, 172, 199, 205, 258, 321, 348, 363 |
| Lsp1109I | GCAGC | 1 cut(s) | 121 |
| LweI | GCATC | 2 cut(s) | 129, 396 |
| MaeI | CTAG | 1 cut(s) | 212 |
| MaeIII | GTNAC | 1 cut(s) | 226 |
| MalI | GATC | 3 cut(s) | 21, 110, 254 |
| MboI | GATC | 3 cut(s) | 19, 108, 252 |
| MboII | GAAGA | 3 cut(s) | 92, 257, 351 |
| MfeI | CAATTG | 1 cut(s) | 156 |
| MhlI | GDGCHC | 1 cut(s) | 151 |
| MluCI | AATT | 4 cut(s) | 59, 156, 296, 342 |
| MnlI | CCTC | 3 cut(s) | 76, 314, 363 |
| Mph1103I | ATGCAT | 1 cut(s) | 411 |
| MseI | TTAA | 1 cut(s) | 63 |
| MslI | CAYNNNNRTG | 1 cut(s) | 75 |
| MspR9I | CCNGG | 2 cut(s) | 187, 336 |
| MunI | CAATTG | 1 cut(s) | 156 |
| MvaI | CCWGG | 2 cut(s) | 187, 336 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 392 |
| NdeII | GATC | 3 cut(s) | 19, 108, 252 |
| NlaIII | CATG | 1 cut(s) | 106 |
| NsiI | ATGCAT | 1 cut(s) | 411 |
| NspV | TTCGAA | 1 cut(s) | 346 |
| PkrI | GCNGC | 1 cut(s) | 136 |
| Psp124BI | GAGCTC | 1 cut(s) | 151 |
| Psp6I | CCWGG | 2 cut(s) | 185, 334 |
| PspGI | CCWGG | 2 cut(s) | 185, 334 |
| PspPI | GGNCC | 1 cut(s) | 189 |
| PstNI | CAGNNNCTG | 1 cut(s) | 192 |
| RseI | CAYNNNNRTG | 1 cut(s) | 75 |
| SacI | GAGCTC | 1 cut(s) | 151 |
| SaqAI | TTAA | 1 cut(s) | 63 |
| SatI | GCNGC | 1 cut(s) | 135 |
| Sau3AI | GATC | 3 cut(s) | 19, 108, 252 |
| Sau96I | GGNCC | 1 cut(s) | 189 |
| ScrFI | CCNGG | 2 cut(s) | 187, 336 |
| SduI | GDGCHC | 1 cut(s) | 151 |
| SetI | ASST | 9 cut(s) | 16, 96, 151, 213, 241, 274, 292, 325, 397 |
| SfaNI | GCATC | 2 cut(s) | 129, 396 |
| SfuI | TTCGAA | 1 cut(s) | 346 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 75 |
| SmlI | CTYRAG | 1 cut(s) | 367 |
| SmoI | CTYRAG | 1 cut(s) | 367 |
| Sse9I | AATT | 4 cut(s) | 59, 156, 296, 342 |
| SspMI | CTAG | 1 cut(s) | 212 |
| SstI | GAGCTC | 1 cut(s) | 151 |
| StyD4I | CCNGG | 2 cut(s) | 185, 334 |
| TaaI | ACNGT | 2 cut(s) | 28, 352 |
| TaqI | TCGA | 2 cut(s) | 111, 346 |
| TaqII | GACCGA | 1 cut(s) | 450 |
| TasI | AATT | 4 cut(s) | 59, 156, 296, 342 |
| Tru1I | TTAA | 1 cut(s) | 63 |
| Tru9I | TTAA | 1 cut(s) | 63 |
| TseI | GCWGC | 1 cut(s) | 134 |
| TspDTI | ATGAA | 3 cut(s) | 93, 129, 413 |
| TspGWI | ACGGA | 1 cut(s) | 458 |
| XapI | RAATTY | 1 cut(s) | 342 |
| XspI | CTAG | 1 cut(s) | 212 |
| Zsp2I | ATGCAT | 1 cut(s) | 411 |