Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003325

Physical Location & Seq

Genomic Coordinates Reverse (-)

77997068 .. 77997625

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATCTCCGAGGAAAGCCCGAGACTGCTCTCCGGTTTTTCTCCTGGGCCGGTAAGCAAGCAAAAGAAGTATCATCATAAGCTTGAATGCTATGTGTCTTTGATTGAGCTTTTGTGTTTGTGTGGTGATTTGGGTAGGATTACATGTGTTGTTGTTGAGCTTAAAAAGATGAACTTTTTGATGAATTCGAATGCGGCGAATTGTTTGATTAGGAGTTTTGGCTGTCTTGGAATGGTTGAGGAGTTGTTGTGGGTTTGGCGTGGGATGAAGGAGAATGGGATTGAGCCTAGTTTGTATACTTATAACTTTTTGGTGAATGGATTGGTGAACTCGATGTTTATTGAATCCGCGGAGCGGGTTTTCGAGGTGGGAAGATTGTGCCTGACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

6.71

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	51 - 108	3.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	65 - 110	9.4e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03560
fragaria_vesca	FvH4_6g45000
malus_domestica	MD09G1090900.v1.1 MD17G1080900.v1.1
prunus_persica	Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1
pyrus_communis	pycom03g08050 pycom09g01610 pycom17g07920
rosa_chinensis	RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621
rosa_laevigata	RLG00000021332
rosa_multiflora	Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088200 Rroxscaffold_5G00386740
rosa_rugosa	Rorug02G0496100 Rorug04G0369800 Rorug04G0369900
rosa_samantha	Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600
rosa_wichuraiana	Rw2G046560 Rw4G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	296
AccII	CGCG	1 cut(s)	350
AciI	CCGC	4 cut(s)	194, 348, 350, 355
AcsI	RAATTY	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	354
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	86, 344
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	3 cut(s)	82, 109, 160
AluI	AGCT	3 cut(s)	82, 109, 160
Alw26I	GTCTC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	137, 325, 337
AsuII	TTCGAA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	288
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	9, 44, 348
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse118I	RCCGGY	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	3 cut(s)	9, 44, 348
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	33, 50
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	16
BsmI	GAATGC	2 cut(s)	92, 196
BsnI	GGCC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	19
Bsp119I	TTCGAA	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	4 cut(s)	194, 348, 350, 355
BspANI	GGCC	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	350
BspT104I	TTCGAA	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	9, 44, 348
BssMI	GATC	1 cut(s)	3
BssNAI	GTATAC	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	3
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	43
BstUI	CGCG	1 cut(s)	350
BstZ17I	GTATAC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	47
Cfr42I	CCGCGG	1 cut(s)	351
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	7 cut(s)	18, 49, 82, 109, 160, 222, 286
CviKI_1	RGCY	7 cut(s)	18, 49, 82, 109, 160, 222, 286
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	43
FaeI	CATG	1 cut(s)	147
FaiI	YATR	5 cut(s)	78, 93, 145, 297, 303
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	1 cut(s)	143
FauI	CCCGC	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	2 cut(s)	33, 50
Hin1II	CATG	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	2 cut(s)	33, 50
HphI	GGTGA	3 cut(s)	137, 325, 337
Hpy166II	GTNNAC	2 cut(s)	297, 328
Hpy188I	TCNGA	1 cut(s)	10
Hpy8I	GTNNAC	2 cut(s)	297, 328
HpyAV	CCTTC	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	147
KspI	CCGCGG	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	4 cut(s)	30, 46, 57, 63
MaeI	CTAG	1 cut(s)	288
MalI	GATC	1 cut(s)	5
MbiI	CCGCTC	1 cut(s)	355
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	384
MluCI	AATT	2 cut(s)	184, 199
MnlI	CCTC	3 cut(s)	4, 232, 358
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	2 cut(s)	33, 50
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	2 cut(s)	92, 196
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	350
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	147
NspI	RCATGY	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	188
PciI	ACATGT	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PctI	GAATGC	2 cut(s)	92, 196
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	143
PsiI	TTATAA	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	47
SacII	CCGCGG	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	4 cut(s)	84, 111, 162, 369
Sfr303I	CCGCGG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	188
SgrBI	CCGCGG	1 cut(s)	351
Sse9I	AATT	2 cut(s)	184, 199
SsiI	CCGC	4 cut(s)	194, 348, 350, 355
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	43
TaqI	TCGA	3 cut(s)	188, 332, 363
TasI	AATT	2 cut(s)	184, 199
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspDTI	ATGAA	3 cut(s)	185, 197, 281
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.