Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003325

Physical Location & Seq

Genomic Coordinates Reverse (-)

68978981 .. 68980942

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG458300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1962 bp

ATGAGAAGAAGCCTACTCAGACTCAGGGCTTCTTCAGCAACCCATGTCCTTCCTCCATGGCCTCCTCCTTCCTACTACAATGGTGGGTCTTCATCAAAAGCCTCAAACTTTCAGTCCACGTCAGCTTTCAGCTCAAATTCCAGGTGGGTCGTCGTCACCAACTCTCTTCCTCCACCAGAATGGGTAGAGCCTTTCAATGACGTCTCTGACATAGTCTCCAGCCCACAACGCTTCGACCCATCTCCATGGGTGGCCCAAATTCTCAATCTTTTAGACGGGTCTCCGCAGATGGAACCCAACTTAGACTCTTACTGCCACAAATTCCTGATCAAACTGTCTCCCAATTTCGTTGCATATGTGTTGAAATCTGATGATCTCCGAGGAAAGCCCGAGACTGCTCTACGGTTTTTCTCCTGGGCCGGTAAGCAAAAGAAGTATCATCATAAGCTTGAATGCTATGTGTCTTTGATTGAGCTTTTGTGTTTGTGTGGTGATTTGGATAGGATTAGATGTGTTGTTGTTGAGCTTAAAAATATGAACTTTTTGATGAATTCAAATGCGGCGAATTGTTTGATTAAGAGTTTTGGCTGTCTTGGAATGGTTGAGGAGTTGTTGTGGGTTTGGCGTGGGATGAAGGAGAATGGGATTGAGCCTAGTTTGTATACTTATAACTTTTTGGTGAATGGATTGGTGAACTCGATGTTTATTGAATCCGCGGAGCGGGTTTTCGAGGTTATGGAAGGTGGGAAGATTGTGCCTGACATTGTGACTTATAATACAATGATCAAAGGGTATTGTAAGGCAGGGAAAACCCAGAAGGCAATGGAGAAGTTTAGGGATATGGAGGGGAGGAATGTGGAGGCTGATAAGATTACTTATATGACTTTGATGCAGGGGTGTTATTCGGAAGGAGATTTCGATTCATGTTTGAGTCTGTACCAGGAAATGAGAGAGAAGGGGATTGAAATTCCATCTCACGCGTATAGTTTAGTCATCAATGGGCTATGTAAAGGTGGGAAATGTATGGTTGGGTATGCTGTTTTTGAAGATATGATTGAGAAGGGTTGTAAAGCAAATGTGGCAAACTATACAGCTTTGATCGATTCATATGCAAAATGTGGGTGCATTGAAGAGGCAATGAAGCTTTTCGAGAGGATGAAGAGCGATGGGCTTGAACCAGATGGGGTTACTTATGGGGTTATTGTCAATGGATTATGTAAGAGTGGGAGATTGGAGAAGGCCATGGAGTATTTTCAGTTTTGTCAAAACAGCAGAATGGCAGACAATGCTATGTTGTATTCTAGTTTAATCGATGGTCTTGGAAAGGCTGGAAGGGTTGATGAAGCTGAAAGGGTATTCGAAAAGATGATCGAAAAGGGTTGTCCACCGGATTCATACTGCTATAATGCCCTTATCGATGCCCTAGCAAAATGTGGAAAAACTGATGAAGCTTTAGCACTCTTTAAGAAAATGGAAAAAGAAGGTTGTGATCAGACCGTTTATACATACACAATACTCATTGATGGACTATTTAAGGAGCATAGGAATGAAGAGGCATTGAAGCTGTGGGACATGATGATCGATAAAGGCATCACACCAACTGCTGCTTCATTCAGAGCTCTCTCAGTTGGGCTTTGTCTCTCAGGCAAAGTAGCCAGGGCCTGCAAGATTTTGGATGACCTAGCACCAATGGGCGTAATTCCTGAGACAGCTTTTGAAGATATGATCAATGTGTTGTGCAAAGCTGGTCGTGTCAAGGAAGCTTGCAAATTGGCTGATGGCATTGTGGATAGAGGTAGGGAAATACCAGGAAGAATTCGAACTGTTCTAATCAATGCCTTGAGGAAAACAGGGAATGCAGATTTAGCTATGAAGTTGATGCATAGTAAGATTGGTATTGGGTATGACCGATGGGGTAGTGTCAAAAAGCGAGTGAAGTTCCGTATTCTCATTGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

653

Amino Acids

73.11

Weight (kDa)

7.86

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	185 - 232	7.6e-08	PPR repeat family
PPR_3	PF13812	211 - 265	7.7e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	236 - 266	3.2e-06	PPR repeat family
PPR_1	PF12854	251 - 282	5.4e-13	PPR repeat
PPR_2	PF13041	253 - 300	2.3e-16	PPR repeat family
PPR	PF01535	256 - 286	2.1e-09	PPR repeat
PPR_2	PF13041	289 - 337	2.6e-11	PPR repeat family
PPR	PF01535	291 - 321	1.4e-06	PPR repeat
PPR_long	PF17177	297 - 417	7e-13	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	326 - 372	1.4e-07	PPR repeat family
TPR_24	PF23276	346 - 491	1.1e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	347 - 403	3.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	354 - 387	5.3e-08	PPR repeat
PPR_2	PF13041	359 - 407	1.6e-15	PPR repeat family
PPR	PF01535	363 - 391	3.1e-09	PPR repeat
PPR_1	PF12854	389 - 418	8.3e-09	PPR repeat
PPR_2	PF13041	429 - 477	1.4e-14	PPR repeat family
PPR_1	PF12854	429 - 456	5.4e-09	PPR repeat
PPR	PF01535	433 - 461	2.4e-09	PPR repeat
PPR_1	PF12854	459 - 492	5.9e-11	PPR repeat
PPR_3	PF13812	463 - 507	1.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	464 - 512	1.8e-16	PPR repeat family
PPR	PF01535	467 - 496	1.1e-09	PPR repeat
PPR_1	PF12854	495 - 526	3.5e-07	PPR repeat
PPR	PF01535	501 - 531	3.3e-06	PPR repeat
PPR_2	PF13041	505 - 546	2.9e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03560
fragaria_vesca	FvH4_6g45000
malus_domestica	MD09G1090900.v1.1 MD17G1080900.v1.1
prunus_persica	Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1
pyrus_communis	pycom03g08050 pycom09g01610 pycom17g07920
rosa_chinensis	RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621
rosa_laevigata	RLG00000021332
rosa_multiflora	Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088200 Rroxscaffold_5G00386740
rosa_rugosa	Rorug02G0496100 Rorug04G0369800 Rorug04G0369900
rosa_samantha	Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600
rosa_wichuraiana	Rw2G046560 Rw4G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	669, 774
AatII	GACGTC	1 cut(s)	204
AccBSI	CCGCTC	1 cut(s)	721
AccI	GTMKAC	1 cut(s)	662
AccII	CGCG	2 cut(s)	716, 980
AciI	CCGC	5 cut(s)	284, 560, 714, 716, 721
AcsI	RAATTY	6 cut(s)	136, 258, 320, 550, 966, 1815
AcuI	CTGAAG	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	938
AfiI	CCNNNNNNNGG	1 cut(s)	720
AflIII	ACRYGT	1 cut(s)	978
AjiI	CACGTC	1 cut(s)	120
AjnI	CCWGG	5 cut(s)	140, 413, 939, 1655, 1807
AjuI	GAANNNNNNNTTGG	2 cut(s)	1591, 1623
Alw21I	GWGCWC	1 cut(s)	1621
Alw26I	GTCTC	7 cut(s)	208, 220, 285, 342, 386, 1643, 1700
AlwNI	CAGNNNCTG	1 cut(s)	1662
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	5 cut(s)	59, 252, 417, 1239, 1659
ApeKI	GCWGC	1 cut(s)	1604
ApoI	RAATTY	6 cut(s)	136, 258, 320, 550, 966, 1815
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
Asp700I	GAANNNNTTC	1 cut(s)	1145
AspS9I	GGNCC	3 cut(s)	253, 417, 1659
AsuHPI	GGTGA	4 cut(s)	148, 503, 691, 703
AsuII	TTCGAA	2 cut(s)	1359, 1819
AvaI	CYCGRG	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	1621
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	1621
BbvI	GCAGC	1 cut(s)	1591
BccI	CCATC	9 cut(s)	247, 283, 979, 1160, 1175, 1307, 1517, 1772, 1905
BcgI	CGANNNNNNTGC	2 cut(s)	1091, 1125
BciT130I	CCWGG	5 cut(s)	142, 415, 941, 1657, 1809
BclI	TGATCA	4 cut(s)	327, 783, 1489, 1725
BcoDI	GTCTC	7 cut(s)	208, 220, 285, 342, 386, 1643, 1700
BfaI	CTAG	4 cut(s)	654, 1302, 1424, 1682
BisI	GCNGC	2 cut(s)	561, 1605
BlsI	GCNGC	2 cut(s)	562, 1606
Bme1390I	CCNGG	5 cut(s)	142, 415, 941, 1657, 1809
BmeT110I	CYCGRG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	253, 417, 1659
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	5 cut(s)	142, 415, 941, 1657, 1809
BmsI	GCATC	4 cut(s)	879, 1408, 1599, 1869
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	202
Bpu14I	TTCGAA	2 cut(s)	1359, 1819
BpuEI	CTTGAG	1 cut(s)	1861
Bsa29I	ATCGAT	4 cut(s)	1101, 1311, 1416, 1581
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	7 cut(s)	56, 245, 379, 414, 714, 1242, 1656
BsaWI	WCCGGW	1 cut(s)	1387
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 599, 629
Bsc4I	CCNNNNNNNGG	1 cut(s)	720
Bse118I	RCCGGY	1 cut(s)	419
Bse3DI	GCAATG	2 cut(s)	828, 1143
BseBI	CCWGG	5 cut(s)	142, 415, 941, 1657, 1809
BseCI	ATCGAT	4 cut(s)	1101, 1311, 1416, 1581
BseDI	CCNNGG	7 cut(s)	56, 245, 379, 414, 714, 1242, 1656
BseGI	GGATG	3 cut(s)	636, 1161, 1681
BseLI	CCNNNNNNNGG	1 cut(s)	720
BseMI	GCAATG	2 cut(s)	828, 1143
BseMII	CTCAG	5 cut(s)	31, 37, 1638, 1656, 1695
BseRI	GAGGAG	2 cut(s)	54, 620
BseXI	GCAGC	1 cut(s)	1591
Bsh1236I	CGCG	2 cut(s)	716, 980
BshFI	GGCC	5 cut(s)	61, 254, 419, 1241, 1661
BshVI	ATCGAT	4 cut(s)	1101, 1311, 1416, 1581
BsiHKAI	GWGCWC	1 cut(s)	1621
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	420, 1388
BslFI	GGGAC	1 cut(s)	1583
BslI	CCNNNNNNNGG	1 cut(s)	720
BsmAI	GTCTC	7 cut(s)	208, 220, 285, 342, 386, 1643, 1700
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	1583
BsmI	GAATGC	2 cut(s)	458, 1861
BsnI	GGCC	5 cut(s)	61, 254, 419, 1241, 1661
Bso31I	GGTCTC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	2 cut(s)	1359, 1819
Bsp1286I	GDGCHC	1 cut(s)	1621
Bsp143I	GATC	8 cut(s)	327, 373, 783, 1098, 1368, 1489, 1578, 1725
Bsp19I	CCATGG	3 cut(s)	56, 245, 1242
BspACI	CCGC	5 cut(s)	284, 560, 714, 716, 721
BspANI	GGCC	5 cut(s)	61, 254, 419, 1241, 1661
BspCNI	CTCAG	5 cut(s)	30, 36, 1637, 1655, 1696
BspDI	ATCGAT	4 cut(s)	1101, 1311, 1416, 1581
BspFNI	CGCG	2 cut(s)	716, 980
BspLI	GGNNCC	1 cut(s)	294
BspQI	GCTCTTC	1 cut(s)	1154
BspT104I	TTCGAA	2 cut(s)	1359, 1819
BspTNI	GGTCTC	1 cut(s)	285
BsrBI	CCGCTC	1 cut(s)	721
BsrDI	GCAATG	2 cut(s)	828, 1143
BsrFI	RCCGGY	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	7 cut(s)	56, 245, 379, 414, 714, 1242, 1656
BssMI	GATC	8 cut(s)	327, 373, 783, 1098, 1368, 1489, 1578, 1725
BssNAI	GTATAC	1 cut(s)	663
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	3 cut(s)	56, 245, 1242
Bst1107I	GTATAC	1 cut(s)	663
Bst2UI	CCWGG	5 cut(s)	142, 415, 941, 1657, 1809
Bst4CI	ACNGT	4 cut(s)	336, 405, 1498, 1825
Bst6I	CTCTTC	4 cut(s)	171, 1125, 1154, 1545
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	1286
BstBI	TTCGAA	2 cut(s)	1359, 1819
BstC8I	GCNNGC	2 cut(s)	1663, 1765
BstDEI	CTNAG	6 cut(s)	17, 23, 301, 1624, 1642, 1704
BstDSI	CCRYGG	4 cut(s)	56, 245, 714, 1242
BstF5I	GGATG	3 cut(s)	636, 1161, 1681
BstFNI	CGCG	2 cut(s)	716, 980
BstKTI	GATC	8 cut(s)	330, 376, 786, 1101, 1371, 1492, 1581, 1728
BstMAI	GTCTC	7 cut(s)	208, 220, 285, 342, 386, 1643, 1700
BstMBI	GATC	8 cut(s)	327, 373, 783, 1098, 1368, 1489, 1578, 1725
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 228, 1079, 1286, 1865
BstNI	CCWGG	5 cut(s)	142, 415, 941, 1657, 1809
BstSCI	CCNGG	5 cut(s)	140, 413, 939, 1655, 1807
BstUI	CGCG	2 cut(s)	716, 980
BstV1I	GCAGC	1 cut(s)	1591
BstV2I	GAAGAC	1 cut(s)	81
BstXI	CCANNNNNNTGG	2 cut(s)	180, 246
BstZ17I	GTATAC	1 cut(s)	663
Bsu15I	ATCGAT	4 cut(s)	1101, 1311, 1416, 1581
BsuRI	GGCC	5 cut(s)	61, 254, 419, 1241, 1661
BsuTUI	ATCGAT	4 cut(s)	1101, 1311, 1416, 1581
BtgI	CCRYGG	4 cut(s)	56, 245, 714, 1242
BtgZI	GCGATG	1 cut(s)	1179
BtrI	CACGTC	1 cut(s)	120
BtsCI	GGATG	3 cut(s)	636, 1161, 1681
Cac8I	GCNNGC	2 cut(s)	1663, 1765
CaiI	CAGNNNCTG	1 cut(s)	1662
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	3 cut(s)	253, 417, 1659
Cfr42I	CCGCGG	1 cut(s)	717
ClaI	ATCGAT	4 cut(s)	1101, 1311, 1416, 1581
Csp6I	GTAC	1 cut(s)	937
CviAII	CATG	6 cut(s)	44, 57, 246, 924, 1243, 1573
CviQI	GTAC	1 cut(s)	937
DdeI	CTNAG	6 cut(s)	17, 23, 301, 1624, 1642, 1704
DpnI	GATC	8 cut(s)	329, 375, 785, 1100, 1370, 1491, 1580, 1727
DpnII	GATC	8 cut(s)	327, 373, 783, 1098, 1368, 1489, 1578, 1725
Eam1104I	CTCTTC	4 cut(s)	171, 1125, 1154, 1545
EarI	CTCTTC	4 cut(s)	171, 1125, 1154, 1545
Ecl136II	GAGCTC	1 cut(s)	1619
Eco130I	CCWWGG	3 cut(s)	56, 245, 1242
Eco24I	GRGCYC	1 cut(s)	1621
Eco31I	GGTCTC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	1619
Eco57I	CTGAAG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	1619
EcoO109I	RGGNCCY	1 cut(s)	1659
EcoRI	GAATTC	2 cut(s)	550, 1815
EcoRII	CCWGG	5 cut(s)	140, 413, 939, 1655, 1807
EcoT14I	CCWWGG	3 cut(s)	56, 245, 1242
EcoT22I	ATGCAT	1 cut(s)	1884
EcoT38I	GRGCYC	1 cut(s)	1621
ErhI	CCWWGG	3 cut(s)	56, 245, 1242
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	6 cut(s)	47, 60, 249, 927, 1246, 1576
FaqI	GGGAC	1 cut(s)	1583
FatI	CATG	6 cut(s)	43, 56, 245, 923, 1242, 1572
FauI	CCCGC	1 cut(s)	714
FauNDI	CATATG	2 cut(s)	355, 1108
FbaI	TGATCA	4 cut(s)	327, 783, 1489, 1725
FblI	GTMKAC	1 cut(s)	662
Fnu4HI	GCNGC	2 cut(s)	561, 1605
FokI	GGATG	3 cut(s)	643, 1168, 1688
FriOI	GRGCYC	1 cut(s)	1621
Fsp4HI	GCNGC	2 cut(s)	561, 1605
FspBI	CTAG	4 cut(s)	654, 1302, 1424, 1682
GluI	GCNGC	2 cut(s)	561, 1605
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	5 cut(s)	61, 254, 419, 1241, 1661
HapII	CCGG	2 cut(s)	420, 1388
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	47, 60, 249, 927, 1246, 1576
HindIII	AAGCTT	4 cut(s)	446, 1142, 1449, 1761
HinfI	GANTC	7 cut(s)	21, 305, 710, 920, 931, 1103, 1391
HpaII	CCGG	2 cut(s)	420, 1388
HphI	GGTGA	4 cut(s)	148, 503, 691, 703
Hpy166II	GTNNAC	4 cut(s)	117, 663, 694, 1385
Hpy188I	TCNGA	7 cut(s)	20, 208, 370, 380, 907, 1494, 1616
Hpy188III	TCNNGA	3 cut(s)	325, 1150, 1703
Hpy8I	GTNNAC	4 cut(s)	117, 663, 694, 1385
Hpy99I	CGWCG	1 cut(s)	155
HpyCH4III	ACNGT	4 cut(s)	336, 405, 1498, 1825
HpyCH4IV	ACGT	2 cut(s)	119, 201
HpyCH4V	TGCA	9 cut(s)	353, 892, 1112, 1125, 1665, 1740, 1767, 1859, 1882
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 228, 1079, 1286, 1865
HpyF3I	CTNAG	6 cut(s)	17, 23, 301, 1624, 1642, 1704
HpySE526I	ACGT	2 cut(s)	119, 201
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	47, 60, 249, 927, 1246, 1576
Ksp22I	TGATCA	4 cut(s)	327, 783, 1489, 1725
KspI	CCGCGG	1 cut(s)	717
Kzo9I	GATC	8 cut(s)	327, 373, 783, 1098, 1368, 1489, 1578, 1725
LguI	GCTCTTC	1 cut(s)	1154
LmnI	GCTCC	2 cut(s)	718, 1537
Lsp1109I	GCAGC	1 cut(s)	1591
LweI	GCATC	4 cut(s)	879, 1408, 1599, 1869
MaeI	CTAG	4 cut(s)	654, 1302, 1424, 1682
MaeII	ACGT	2 cut(s)	119, 201
MaeIII	GTNAC	3 cut(s)	154, 766, 1186
MalI	GATC	8 cut(s)	329, 375, 785, 1100, 1370, 1491, 1580, 1727
MbiI	CCGCTC	1 cut(s)	721
MboI	GATC	8 cut(s)	327, 373, 783, 1098, 1368, 1489, 1578, 1725
MhlI	GDGCHC	1 cut(s)	1621
MluI	ACGCGT	1 cut(s)	978
MlyI	GAGTC	3 cut(s)	15, 299, 940
Mph1103I	ATGCAT	1 cut(s)	1884
MroXI	GAANNNNTTC	1 cut(s)	1145
MseI	TTAA	5 cut(s)	528, 576, 1307, 1464, 1533
MslI	CAYNNNNRTG	3 cut(s)	178, 244, 1545
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	2 cut(s)	420, 1388
MspR9I	CCNGG	5 cut(s)	142, 415, 941, 1657, 1809
Mva1269I	GAATGC	2 cut(s)	458, 1861
MvaI	CCWGG	5 cut(s)	142, 415, 941, 1657, 1809
MvnI	CGCG	2 cut(s)	716, 980
MwoI	GCNNNNNNNGC	5 cut(s)	35, 228, 1079, 1286, 1865
NcoI	CCATGG	3 cut(s)	56, 245, 1242
NdeI	CATATG	2 cut(s)	355, 1108
NdeII	GATC	8 cut(s)	327, 373, 783, 1098, 1368, 1489, 1578, 1725
NlaIII	CATG	6 cut(s)	47, 60, 249, 927, 1246, 1576
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	2 cut(s)	154, 766
NsiI	ATGCAT	1 cut(s)	1884
NspV	TTCGAA	2 cut(s)	1359, 1819
PciSI	GCTCTTC	1 cut(s)	1154
PctI	GAATGC	2 cut(s)	458, 1861
PdmI	GAANNNNTTC	1 cut(s)	1145
PfeI	GAWTC	4 cut(s)	710, 920, 1103, 1391
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	562, 1606
PleI	GAGTC	3 cut(s)	15, 299, 939
PpsI	GAGTC	3 cut(s)	15, 299, 939
PsiI	TTATAA	2 cut(s)	669, 774
Psp124BI	GAGCTC	1 cut(s)	1621
Psp6I	CCWGG	5 cut(s)	140, 413, 939, 1655, 1807
PspGI	CCWGG	5 cut(s)	140, 413, 939, 1655, 1807
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	3 cut(s)	253, 417, 1659
PstNI	CAGNNNCTG	1 cut(s)	1662
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	1 cut(s)	938
RsaNI	GTAC	1 cut(s)	937
RseI	CAYNNNNRTG	3 cut(s)	178, 244, 1545
SacI	GAGCTC	1 cut(s)	1621
SacII	CCGCGG	1 cut(s)	717
SapI	GCTCTTC	1 cut(s)	1154
SaqAI	TTAA	5 cut(s)	528, 576, 1307, 1464, 1533
SatI	GCNGC	2 cut(s)	561, 1605
Sau3AI	GATC	8 cut(s)	327, 373, 783, 1098, 1368, 1489, 1578, 1725
Sau96I	GGNCC	3 cut(s)	253, 417, 1659
SchI	GAGTC	3 cut(s)	15, 299, 940
ScrFI	CCNGG	5 cut(s)	142, 415, 941, 1657, 1809
SduI	GDGCHC	1 cut(s)	1621
SfaNI	GCATC	4 cut(s)	879, 1408, 1599, 1869
Sfr303I	CCGCGG	1 cut(s)	717
SfuI	TTCGAA	2 cut(s)	1359, 1819
SgrBI	CCGCGG	1 cut(s)	717
SmiMI	CAYNNNNRTG	3 cut(s)	178, 244, 1545
SmlI	CTYRAG	1 cut(s)	1840
SmoI	CTYRAG	1 cut(s)	1840
SsiI	CCGC	5 cut(s)	284, 560, 714, 716, 721
SspMI	CTAG	4 cut(s)	654, 1302, 1424, 1682
SstI	GAGCTC	1 cut(s)	1621
StyD4I	CCNGG	5 cut(s)	140, 413, 939, 1655, 1807
StyI	CCWWGG	3 cut(s)	56, 245, 1242
TaaI	ACNGT	4 cut(s)	336, 405, 1498, 1825
TaiI	ACGT	2 cut(s)	122, 204
TaqII	GACCGA	1 cut(s)	1923
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	4 cut(s)	710, 920, 1103, 1391
Tru1I	TTAA	5 cut(s)	528, 576, 1307, 1464, 1533
Tru9I	TTAA	5 cut(s)	528, 576, 1307, 1464, 1533
TseFI	GTSAC	2 cut(s)	154, 766
TseI	GCWGC	1 cut(s)	1604
Tsp45I	GTSAC	2 cut(s)	154, 766
TspGWI	ACGGA	1 cut(s)	1931
Tth111I	GACNNNGTC	1 cut(s)	212
XapI	RAATTY	6 cut(s)	136, 258, 320, 550, 966, 1815
XmiI	GTMKAC	1 cut(s)	662
XmnI	GAANNNNTTC	1 cut(s)	1145
XspI	CTAG	4 cut(s)	654, 1302, 1424, 1682
ZraI	GACGTC	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	1884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.