Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007544.1

Orthogroup ID

OG0003325

Physical Location & Seq

Genomic Coordinates Reverse (-)

7105 .. 8238

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007544.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgatgactctggaccttgcagatgttcctttgagaagaagcctgatgagaagaagcctagtcagactcagggcttcttcagcaacccatgtccttcctccatggcctcctccttcctactacaatggtgggtcttcatcaaaagcctcaaactttcagtccacgtcagctttcagctcaaattccaggtgggtcgtcgtcaccaactctcttcctccaccagaatgggtagagcctttcaatgacgtctctgacatagtctccagcccacaacgcttcgacccatctccatgggtggcccaaattctcaatcttttagacgggtctccgcagatggaacccaacttagactcttactgccacaaattcctgatcaaactgtctcccaatttcgttgcatatgtgttgaaatctgatgatctccgaggaaagcccgagactgctctacggtttttctcctgggccggtaagcaaaagaagtatcatcataagcttgaatgctatgtgtctttgattgagcttttgtgtttgtgtggtgatttggataggattagatgtgttgttgttgagcttaaaaatatgaactttttgatgaattcgaatgcggcgaattgtttgattaagagttttggctgtcttggaatggttgaggagttgttgtgggtttggcgtgggatgaaggagaatgggattgagcctagtttgtatacttataactttttggtgaatggattggtgaactcaatgtttattgaatccgcggagcgggttttcgaggttatggaaggtgggaagattgtgcctgacattgtgacttataatacaatgatcaaagggtattgtaaggcagggaaaacccagaaggcaatggagaagtttagggatatggaggggaggaatgtggaggctgataagattacttatatgactttgatgcaggggtgctattcggaaggagatttcgattcatgtttgagtctgtaccaggaaatgagagagaaggggattgaaattccatctcacgcgtatagtttagtcatcaatgggctatgtaaaggtgggaaatgtatggttgggtatgctgtttttgaagatatgattgagaagggttgtaaagcaaatgtggcaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

377

Amino Acids

42.53

Weight (kDa)

6.93

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03560
fragaria_vesca	FvH4_6g45000
malus_domestica	MD09G1090900.v1.1 MD17G1080900.v1.1
prunus_persica	Prupe.3G234000_v2.0.a1 Prupe.3G234000_v2.0.a1
pyrus_communis	pycom03g08050 pycom09g01610 pycom17g07920
rosa_chinensis	RchiOBHm_Chr2g0162271 RchiOBHm_Chr2g0162281 RchiOBHm_Chr2g0162291 RchiOBHm_Chr4g0446301 RchiOBHm_Chr5g0064621
rosa_laevigata	RLG00000021332
rosa_multiflora	Rmu_sc0002266.1_g000005 Rmu_sc0007544.1_g000003 Rmu_sc0007544.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088200 Rroxscaffold_5G00386740
rosa_rugosa	Rorug02G0496100 Rorug04G0369800 Rorug04G0369900
rosa_samantha	Rh2AG562100 Rh2BG575200 Rh2BG575300 Rh2CG545500 Rh2CG545600 Rh2DG585100 Rh4AG431700 Rh4BG441000 Rh4CG458300 Rh4DG439600 Rh5BG154600
rosa_wichuraiana	Rw2G046560 Rw4G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	714, 819
AatII	GACGTC	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	707
AccII	CGCG	2 cut(s)	761, 1025
AciI	CCGC	5 cut(s)	329, 605, 759, 761, 766
AcsI	RAATTY	5 cut(s)	181, 303, 365, 595, 1011
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	983
AfiI	CCNNNNNNNGG	1 cut(s)	765
AflIII	ACRYGT	1 cut(s)	1023
AgsI	TTSAA	6 cut(s)	241, 409, 497, 755, 1010, 1091
AjiI	CACGTC	1 cut(s)	165
AjnI	CCWGG	3 cut(s)	185, 458, 984
AluBI	AGCT	5 cut(s)	170, 177, 493, 520, 571
AluI	AGCT	5 cut(s)	170, 177, 493, 520, 571
Alw26I	GTCTC	5 cut(s)	253, 265, 330, 387, 431
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	104, 297, 462
ApoI	RAATTY	5 cut(s)	181, 303, 365, 595, 1011
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspS9I	GGNCC	3 cut(s)	13, 298, 462
AsuHPI	GGTGA	4 cut(s)	193, 548, 736, 748
AsuII	TTCGAA	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	126
BccI	CCATC	3 cut(s)	292, 328, 1024
BciT130I	CCWGG	3 cut(s)	187, 460, 986
BclI	TGATCA	2 cut(s)	372, 828
BcoDI	GTCTC	5 cut(s)	253, 265, 330, 387, 431
BfaI	CTAG	2 cut(s)	59, 699
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	3 cut(s)	187, 460, 986
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	434
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	13, 298, 462
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	187, 460, 986
BmsI	GCATC	1 cut(s)	924
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	599
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	5 cut(s)	101, 290, 424, 459, 759
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 644, 674
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse118I	RCCGGY	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	873
BseBI	CCWGG	3 cut(s)	187, 460, 986
BseDI	CCNNGG	5 cut(s)	101, 290, 424, 459, 759
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMI	GCAATG	1 cut(s)	873
BseMII	CTCAG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	99, 665
Bsh1236I	CGCG	2 cut(s)	761, 1025
BshFI	GGCC	3 cut(s)	106, 299, 464
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	5 cut(s)	253, 265, 330, 387, 431
BsmBI	CGTCTC	1 cut(s)	253
BsmI	GAATGC	2 cut(s)	503, 607
BsnI	GGCC	3 cut(s)	106, 299, 464
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	599
Bsp143I	GATC	3 cut(s)	372, 418, 828
Bsp19I	CCATGG	2 cut(s)	101, 290
BspACI	CCGC	5 cut(s)	329, 605, 759, 761, 766
BspANI	GGCC	3 cut(s)	106, 299, 464
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	2 cut(s)	761, 1025
BspLI	GGNNCC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	330
BsrBI	CCGCTC	1 cut(s)	766
BsrDI	GCAATG	1 cut(s)	873
BsrFI	RCCGGY	1 cut(s)	464
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	5 cut(s)	101, 290, 424, 459, 759
BssMI	GATC	3 cut(s)	372, 418, 828
BssNAI	GTATAC	1 cut(s)	708
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	101, 290
Bst1107I	GTATAC	1 cut(s)	708
Bst2UI	CCWGG	3 cut(s)	187, 460, 986
Bst4CI	ACNGT	2 cut(s)	381, 450
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	246
BstBI	TTCGAA	1 cut(s)	599
BstDEI	CTNAG	2 cut(s)	68, 346
BstDSI	CCRYGG	3 cut(s)	101, 290, 759
BstF5I	GGATG	1 cut(s)	681
BstFNI	CGCG	2 cut(s)	761, 1025
BstKTI	GATC	3 cut(s)	375, 421, 831
BstMAI	GTCTC	5 cut(s)	253, 265, 330, 387, 431
BstMBI	GATC	3 cut(s)	372, 418, 828
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 273, 1124
BstNI	CCWGG	3 cut(s)	187, 460, 986
BstSCI	CCNGG	3 cut(s)	185, 458, 984
BstUI	CGCG	2 cut(s)	761, 1025
BstV2I	GAAGAC	1 cut(s)	126
BstXI	CCANNNNNNTGG	2 cut(s)	225, 291
BstZ17I	GTATAC	1 cut(s)	708
BsuRI	GGCC	3 cut(s)	106, 299, 464
BtgI	CCRYGG	3 cut(s)	101, 290, 759
BtrI	CACGTC	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	681
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	3 cut(s)	13, 298, 462
Cfr42I	CCGCGG	1 cut(s)	762
Csp6I	GTAC	1 cut(s)	982
CviAII	CATG	4 cut(s)	89, 102, 291, 969
CviQI	GTAC	1 cut(s)	982
DdeI	CTNAG	2 cut(s)	68, 346
DpnI	GATC	3 cut(s)	374, 420, 830
DpnII	GATC	3 cut(s)	372, 418, 828
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	101, 290
Eco31I	GGTCTC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	3 cut(s)	185, 458, 984
EcoT14I	CCWWGG	2 cut(s)	101, 290
ErhI	CCWWGG	2 cut(s)	101, 290
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	4 cut(s)	92, 105, 294, 972
FatI	CATG	4 cut(s)	88, 101, 290, 968
FauI	CCCGC	1 cut(s)	759
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	2 cut(s)	372, 828
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	1 cut(s)	688
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	59, 699
GluI	GCNGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	247
HaeIII	GGCC	3 cut(s)	106, 299, 464
HapII	CCGG	1 cut(s)	465
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	4 cut(s)	92, 105, 294, 972
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	6 cut(s)	7, 66, 350, 755, 965, 976
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	4 cut(s)	193, 548, 736, 748
Hpy166II	GTNNAC	3 cut(s)	162, 708, 739
Hpy188I	TCNGA	5 cut(s)	65, 253, 415, 425, 952
Hpy188III	TCNNGA	2 cut(s)	11, 370
Hpy8I	GTNNAC	3 cut(s)	162, 708, 739
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	8 cut(s)	104, 123, 673, 779, 856, 947, 994, 1099
HpyCH4III	ACNGT	2 cut(s)	381, 450
HpyCH4IV	ACGT	2 cut(s)	164, 246
HpyCH4V	TGCA	3 cut(s)	20, 398, 937
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 273, 1124
HpyF3I	CTNAG	2 cut(s)	68, 346
HpySE526I	ACGT	2 cut(s)	164, 246
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	92, 105, 294, 972
Ksp22I	TGATCA	2 cut(s)	372, 828
KspI	CCGCGG	1 cut(s)	762
Kzo9I	GATC	3 cut(s)	372, 418, 828
LmnI	GCTCC	1 cut(s)	763
LweI	GCATC	1 cut(s)	924
MaeI	CTAG	2 cut(s)	59, 699
MaeII	ACGT	2 cut(s)	164, 246
MaeIII	GTNAC	2 cut(s)	199, 811
MalI	GATC	3 cut(s)	374, 420, 830
MbiI	CCGCTC	1 cut(s)	766
MboI	GATC	3 cut(s)	372, 418, 828
MboII	GAAGA	7 cut(s)	48, 63, 69, 126, 203, 805, 1103
MluCI	AATT	7 cut(s)	181, 303, 365, 388, 595, 610, 1011
MluI	ACGCGT	1 cut(s)	1023
MlyI	GAGTC	3 cut(s)	60, 344, 985
MseI	TTAA	2 cut(s)	573, 621
MslI	CAYNNNNRTG	2 cut(s)	223, 289
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	3 cut(s)	187, 460, 986
Mva1269I	GAATGC	2 cut(s)	503, 607
MvaI	CCWGG	3 cut(s)	187, 460, 986
MvnI	CGCG	2 cut(s)	761, 1025
MwoI	GCNNNNNNNGC	3 cut(s)	80, 273, 1124
NcoI	CCATGG	2 cut(s)	101, 290
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	3 cut(s)	372, 418, 828
NlaIII	CATG	4 cut(s)	92, 105, 294, 972
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	199, 811
NspV	TTCGAA	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	605
PctI	GAATGC	2 cut(s)	503, 607
PfeI	GAWTC	2 cut(s)	755, 965
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	3 cut(s)	60, 344, 984
PpsI	GAGTC	3 cut(s)	60, 344, 984
PsiI	TTATAA	2 cut(s)	714, 819
Psp6I	CCWGG	3 cut(s)	185, 458, 984
PspGI	CCWGG	3 cut(s)	185, 458, 984
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	3 cut(s)	13, 298, 462
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	983
RsaNI	GTAC	1 cut(s)	982
RseI	CAYNNNNRTG	2 cut(s)	223, 289
SacII	CCGCGG	1 cut(s)	762
SaqAI	TTAA	2 cut(s)	573, 621
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	3 cut(s)	372, 418, 828
Sau96I	GGNCC	3 cut(s)	13, 298, 462
SchI	GAGTC	3 cut(s)	60, 344, 985
ScrFI	CCNGG	3 cut(s)	187, 460, 986
SfaNI	GCATC	1 cut(s)	924
Sfr303I	CCGCGG	1 cut(s)	762
SfuI	TTCGAA	1 cut(s)	599
SgrBI	CCGCGG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	223, 289
Sse9I	AATT	7 cut(s)	181, 303, 365, 388, 595, 610, 1011
SsiI	CCGC	5 cut(s)	329, 605, 759, 761, 766
SspMI	CTAG	2 cut(s)	59, 699
StyD4I	CCNGG	3 cut(s)	185, 458, 984
StyI	CCWWGG	2 cut(s)	101, 290
TaaI	ACNGT	2 cut(s)	381, 450
TaiI	ACGT	2 cut(s)	167, 249
TaqI	TCGA	4 cut(s)	279, 599, 774, 963
TasI	AATT	7 cut(s)	181, 303, 365, 388, 595, 610, 1011
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	2 cut(s)	755, 965
Tru1I	TTAA	2 cut(s)	573, 621
Tru9I	TTAA	2 cut(s)	573, 621
TseFI	GTSAC	2 cut(s)	199, 811
Tsp45I	GTSAC	2 cut(s)	199, 811
TspDTI	ATGAA	5 cut(s)	126, 596, 608, 692, 957
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	5 cut(s)	181, 303, 365, 595, 1011
XmiI	GTMKAC	1 cut(s)	707
XspI	CTAG	2 cut(s)	59, 699
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.