AT1G04830

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
1358574 .. 1362019
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04830.1

Sequence Viewer

Length: 1347 bp
ATGGTGAGGAAAAAGGTACCGGAATGGCTTAATAGCACCATGTGGTCTACTCCTCCTCCGCCATCTTCTTACGACGATGGTCTCCTCCGTCATTCCCCCGTCACTAAGATGAAGGAAGAGGCAGAATCGATTTCCGTTGCTCCCAGGCTTAATTCTGCTCCTCCGCCTTCTTCCAACACTTCGGTTCCATCGCCGTCGCATAGACCGAGGAACGGTAACAGTATCTCTGGCGGTAGTGGCGAATATGGACATTCCGTTGGTCCTTCCGCCGAAGACTTTTCCCGCCAGGCTCATGTCTCAGCGGAGTTGTCGAAGAAGGTGATCAATATGAAGGAATTGAGGAGTCTAGCTTTACAAAGTTTGCCGGATTCTCCCGGGATCCGTTCTACTGTCTGGAAGCTTTTGCTTGGTTACTTGCCACCTGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAAGGATGAGCTTCTGACGAGTCCTTCAGAAATCACATGGAAAATGGTGAGGTCAAAGGGGTTCGACAACTATGACTTGAAGAGTGAAAGCCGATGCATGCTTGCCCGATCCAGAATTACTGACGAGGACCATCCTTTAAGCCTAGGGAAGGCGAGTATCTGGAATACATACTTCCAGGATACGGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTTCTCCGGTGAATCATCGTTTGCGCGTTCTAATCAGGAATCTATGAAGAATATATTACTTGTATTTGCGAAGTTAAACCAAGGCATCAGATATGTTCAAGGGATGAACGAAATTTTAGCACCTATCTTTTATGTATTCCGTAACGACCCTGATGAAGATAGTTCATCCCATGCTGAAGCAGATGCATTCTTTTGCTTTGTTGAATTGTTGAGTGGATTTCGAGACTTCTACTGTCAACAACTCGACAATAGTGTGGTGGGAATCCGATCTGCAATTACGAGGCTCTCACAACTTGTGAGGAAGCATGATGAGGAACTGTGGCGTCATCTAGAGATCACCACGAAAGTAAATCCACAGTTCTATGCATTTAGGTGGATCACTCTCCTCCTAACACAAGAGTTTAGTTTCTTTGACAGTCTTCACATATGGGATGCACTCTTAAGCGACCCTGAAGGTCCGCTGGAAAGCTTACTGGGGATATGTTGTGCGATGCTGGTACTGGTGAGGAGGAGGCTAATCGCTGGGGATTTCACGTCGAATATGAAGTTACTTCAACACTATCCAACTACAAACATCAGTCATCTCTTGTATGTAGCCAATAAACTTCGTTCCAAAATGTTAGTATAA

Protein Analysis

448

Amino Acids

51.09

Weight (kDa)

7.7

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 219 - 412 5.8e-37 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 253 - 425 5.9e-07 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 689
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 47
AccII CGCG 1 cut(s) 745
AciI CCGC 7 cut(s) 59, 164, 231, 267, 283, 302, 1178
AclI AACGTT 1 cut(s) 427
AclWI GGATC 5 cut(s) 373, 386, 456, 582, 1103
AcsI RAATTY 1 cut(s) 831
AcuI CTGAAG 3 cut(s) 489, 915, 1191
AcyI GRCGYC 1 cut(s) 1042
AdeI CACNNNGTG 1 cut(s) 42
AfaI GTAC 3 cut(s) 18, 700, 1218
AfiI CCNNNNNNNGG 3 cut(s) 212, 628, 661
AflII CTTAAG 1 cut(s) 1159
AgsI TTSAA 5 cut(s) 451, 559, 818, 923, 1274
AjiI CACGTC 1 cut(s) 1254
AjnI CCWGG 3 cut(s) 143, 285, 654
AluBI AGCT 4 cut(s) 350, 400, 490, 1188
AluI AGCT 4 cut(s) 350, 400, 490, 1188
Alw26I GTCTC 4 cut(s) 86, 301, 659, 936
AlwI GGATC 5 cut(s) 373, 386, 456, 582, 1103
Ama87I CYCGRG 1 cut(s) 374
ApoI RAATTY 1 cut(s) 831
Asp718I GGTACC 1 cut(s) 16
AspA2I CCTAGG 1 cut(s) 622
AspLEI GCGC 1 cut(s) 745
AspS9I GGNCC 3 cut(s) 260, 607, 1175
AsuC2I CCSGG 2 cut(s) 375, 376
AsuHPI GGTGA 6 cut(s) 16, 331, 538, 740, 1048, 1234
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 3 cut(s) 260, 607, 1175
AvrII CCTAGG 1 cut(s) 622
BamHI GGATCC 1 cut(s) 378
BanI GGYRCC 1 cut(s) 16
BbsI GAAGAC 2 cut(s) 279, 1130
BccI CCATC 4 cut(s) 70, 71, 196, 618
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 3 cut(s) 145, 287, 656
BciVI GTATCC 1 cut(s) 652
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 2 cut(s) 375, 376
BcoDI GTCTC 4 cut(s) 86, 301, 659, 936
BfaI CTAG 3 cut(s) 347, 623, 1049
BfrI CTTAAG 1 cut(s) 1159
BfuI GTATCC 1 cut(s) 652
BlnI CCTAGG 1 cut(s) 622
Bme1390I CCNGG 5 cut(s) 145, 287, 375, 376, 656
Bme18I GGWCC 3 cut(s) 260, 607, 1175
BmeT110I CYCGRG 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 1254
BmgT120I GGNCC 3 cut(s) 260, 607, 1175
BmiI GGNNCC 3 cut(s) 18, 186, 380
BmrFI CCNGG 5 cut(s) 145, 287, 375, 376, 656
BmrI ACTGGG 1 cut(s) 1202
BmsI GCATC 5 cut(s) 563, 813, 892, 1141, 1200
BmuI ACTGGG 1 cut(s) 1202
BoxI GACNNNNGTC 1 cut(s) 78
BpiI GAAGAC 2 cut(s) 279, 1130
BpuMI CCSGG 2 cut(s) 375, 376
Bsa29I ATCGAT 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 1042
BsaI GGTCTC 2 cut(s) 86, 659
BsaJI CCNNGG 5 cut(s) 143, 206, 374, 622, 799
BsaWI WCCGGW 2 cut(s) 19, 725
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 628, 661
Bse1I ACTGG 2 cut(s) 1197, 1224
BseBI CCWGG 3 cut(s) 145, 287, 656
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 5 cut(s) 143, 206, 374, 622, 799
BseGI GGATG 6 cut(s) 490, 610, 703, 828, 884, 1156
BseLI CCNNNNNNNGG 3 cut(s) 212, 628, 661
BseMII CTCAG 2 cut(s) 312, 435
BseNI ACTGG 2 cut(s) 1197, 1224
BseRI GAGGAG 8 cut(s) 42, 45, 74, 150, 355, 1094, 1240, 1243
BseYI CCCAGC 1 cut(s) 1241
Bsh1236I CGCG 1 cut(s) 745
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 4 cut(s) 20, 365, 375, 726
BslI CCNNNNNNNGG 3 cut(s) 212, 628, 661
BsmAI GTCTC 4 cut(s) 86, 301, 659, 936
BsmI GAATGC 1 cut(s) 905
Bso31I GGTCTC 2 cut(s) 86, 659
BsoBI CYCGRG 1 cut(s) 374
Bsp143I GATC 7 cut(s) 321, 378, 461, 587, 986, 1053, 1095
BspACI CCGC 7 cut(s) 59, 164, 231, 267, 283, 302, 1178
BspCNI CTCAG 2 cut(s) 311, 436
BspDI ATCGAT 1 cut(s) 128
BspFNI CGCG 1 cut(s) 745
BspLI GGNNCC 3 cut(s) 18, 186, 380
BspPI GGATC 5 cut(s) 373, 386, 456, 582, 1103
BspT107I GGYRCC 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 1159
BspTNI GGTCTC 2 cut(s) 86, 659
BsrI ACTGG 2 cut(s) 1197, 1224
BssECI CCNNGG 5 cut(s) 143, 206, 374, 622, 799
BssMI GATC 7 cut(s) 321, 378, 461, 587, 986, 1053, 1095
BssNI GRCGYC 1 cut(s) 1042
BssT1I CCWWGG 2 cut(s) 622, 799
Bst2UI CCWGG 3 cut(s) 145, 287, 656
Bst4CI ACNGT 7 cut(s) 215, 221, 391, 953, 1038, 1077, 1136
Bst6I CTCTTC 2 cut(s) 111, 554
BstACI GRCGYC 1 cut(s) 1042
BstAFI CTTAAG 1 cut(s) 1159
BstC8I GCNNGC 2 cut(s) 578, 582
BstDEI CTNAG 3 cut(s) 105, 298, 444
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 6 cut(s) 490, 610, 703, 828, 884, 1156
BstFNI CGCG 1 cut(s) 745
BstHHI GCGC 1 cut(s) 745
BstKTI GATC 7 cut(s) 324, 381, 464, 590, 989, 1056, 1098
BstMAI GTCTC 4 cut(s) 86, 301, 659, 936
BstMBI GATC 7 cut(s) 321, 378, 461, 587, 986, 1053, 1095
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 3 cut(s) 145, 287, 656
BstNSI RCATGY 1 cut(s) 580
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 5 cut(s) 143, 285, 373, 374, 654
BstUI CGCG 1 cut(s) 745
BstV2I GAAGAC 2 cut(s) 279, 1130
BstX2I RGATCY 2 cut(s) 378, 461
BstYI RGATCY 2 cut(s) 378, 461
Bsu15I ATCGAT 1 cut(s) 128
BsuI GTATCC 1 cut(s) 652
BsuTUI ATCGAT 1 cut(s) 128
BtgZI GCGATG 2 cut(s) 174, 1223
BtrI CACGTC 1 cut(s) 1254
BtsCI GGATG 6 cut(s) 490, 610, 703, 828, 884, 1156
Cac8I GCNNGC 2 cut(s) 578, 582
CfoI GCGC 1 cut(s) 745
Cfr13I GGNCC 3 cut(s) 260, 607, 1175
Cfr9I CCCGGG 1 cut(s) 374
ClaI ATCGAT 1 cut(s) 128
CseI GACGC 1 cut(s) 1031
Csp6I GTAC 3 cut(s) 17, 699, 1217
CviAII CATG 6 cut(s) 40, 293, 516, 577, 890, 1025
CviQI GTAC 3 cut(s) 17, 699, 1217
DdeI CTNAG 3 cut(s) 105, 298, 444
DpnI GATC 7 cut(s) 323, 380, 463, 589, 988, 1055, 1097
DpnII GATC 7 cut(s) 321, 378, 461, 587, 986, 1053, 1095
DraIII CACNNNGTG 1 cut(s) 42
DrdI GACNNNNNNGTC 1 cut(s) 689
DseDI GACNNNNNNGTC 1 cut(s) 689
Eam1104I CTCTTC 2 cut(s) 111, 554
EarI CTCTTC 2 cut(s) 111, 554
EciI GGCGGA 3 cut(s) 48, 153, 256
Eco130I CCWWGG 2 cut(s) 622, 799
Eco31I GGTCTC 2 cut(s) 86, 659
Eco47I GGWCC 3 cut(s) 260, 607, 1175
Eco57I CTGAAG 3 cut(s) 489, 915, 1191
Eco88I CYCGRG 1 cut(s) 374
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoRII CCWGG 3 cut(s) 143, 285, 654
EcoT14I CCWWGG 2 cut(s) 622, 799
EcoT22I ATGCAT 3 cut(s) 578, 907, 1087
ErhI CCWWGG 2 cut(s) 622, 799
FaeI CATG 6 cut(s) 43, 296, 519, 580, 893, 1028
FatI CATG 6 cut(s) 39, 292, 515, 576, 889, 1024
FauI CCCGC 1 cut(s) 290
FauNDI CATATG 1 cut(s) 1145
FbaI TGATCA 1 cut(s) 321
FblI GTMKAC 1 cut(s) 47
FokI GGATG 6 cut(s) 497, 597, 690, 835, 871, 1163
FspBI CTAG 3 cut(s) 347, 623, 1049
GlaI GCGC 1 cut(s) 744
GsaI CCCAGC 1 cut(s) 1245
HapII CCGG 4 cut(s) 20, 365, 375, 726
HgaI GACGC 1 cut(s) 1031
HhaI GCGC 1 cut(s) 745
Hin1I GRCGYC 1 cut(s) 1042
Hin1II CATG 6 cut(s) 43, 296, 519, 580, 893, 1028
Hin6I GCGC 1 cut(s) 743
HinP1I GCGC 1 cut(s) 743
HincII GTYRAC 2 cut(s) 441, 956
HindII GTYRAC 2 cut(s) 441, 956
HindIII AAGCTT 2 cut(s) 398, 1186
HinfI GANTC 7 cut(s) 125, 343, 368, 499, 731, 758, 981
HpaII CCGG 4 cut(s) 20, 365, 375, 726
HphI GGTGA 6 cut(s) 16, 331, 538, 740, 1048, 1234
Hpy166II GTNNAC 5 cut(s) 48, 431, 441, 701, 956
Hpy188I TCNGA 4 cut(s) 495, 508, 809, 986
Hpy188III TCNNGA 7 cut(s) 394, 591, 640, 707, 755, 941, 1049
Hpy8I GTNNAC 5 cut(s) 48, 431, 441, 701, 956
Hpy99I CGWCG 3 cut(s) 77, 199, 1258
HpyAV CCTTC 8 cut(s) 106, 177, 273, 310, 325, 513, 622, 1166
HpyCH4III ACNGT 7 cut(s) 215, 221, 391, 953, 1038, 1077, 1136
HpyCH4IV ACGT 2 cut(s) 427, 1253
HpyCH4V TGCA 5 cut(s) 576, 905, 992, 1085, 1154
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 3 cut(s) 105, 298, 444
HpySE526I ACGT 2 cut(s) 427, 1253
Hsp92I GRCGYC 1 cut(s) 1042
Hsp92II CATG 6 cut(s) 43, 296, 519, 580, 893, 1028
HspAI GCGC 1 cut(s) 743
KpnI GGTACC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 7 cut(s) 321, 378, 461, 587, 986, 1053, 1095
LmnI GCTCC 2 cut(s) 145, 163
LweI GCATC 5 cut(s) 563, 813, 892, 1141, 1200
MaeI CTAG 3 cut(s) 347, 623, 1049
MaeII ACGT 2 cut(s) 427, 1253
MaeIII GTNAC 5 cut(s) 100, 215, 410, 860, 1266
MalI GATC 7 cut(s) 323, 380, 463, 589, 988, 1055, 1097
MboI GATC 7 cut(s) 321, 378, 461, 587, 986, 1053, 1095
MboII GAAGA 9 cut(s) 57, 128, 162, 284, 325, 571, 778, 887, 1130
MflI RGATCY 2 cut(s) 378, 461
MluCI AATT 6 cut(s) 151, 335, 594, 831, 923, 993
MlyI GAGTC 2 cut(s) 352, 508
MmeI TCCRAC 2 cut(s) 198, 1307
Mph1103I ATGCAT 3 cut(s) 578, 907, 1087
MseI TTAA 5 cut(s) 30, 150, 617, 794, 1160
MslI CAYNNNNRTG 2 cut(s) 107, 1090
MspA1I CMGCKG 2 cut(s) 302, 1180
MspCI CTTAAG 1 cut(s) 1159
MspI CCGG 4 cut(s) 20, 365, 375, 726
MspR9I CCNGG 5 cut(s) 145, 287, 375, 376, 656
Mva1269I GAATGC 1 cut(s) 905
MvaI CCWGG 3 cut(s) 145, 287, 656
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 1 cut(s) 237
NciI CCSGG 2 cut(s) 375, 376
NdeI CATATG 1 cut(s) 1145
NdeII GATC 7 cut(s) 321, 378, 461, 587, 986, 1053, 1095
NlaIII CATG 6 cut(s) 43, 296, 519, 580, 893, 1028
NlaIV GGNNCC 3 cut(s) 18, 186, 380
NmuCI GTSAC 1 cut(s) 100
NsiI ATGCAT 3 cut(s) 578, 907, 1087
NspI RCATGY 1 cut(s) 580
PaeI GCATGC 1 cut(s) 580
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PctI GAATGC 1 cut(s) 905
PfeI GAWTC 5 cut(s) 125, 368, 731, 758, 981
PfoI TCCNGGA 1 cut(s) 654
PleI GAGTC 2 cut(s) 351, 507
PpsI GAGTC 2 cut(s) 351, 507
PshAI GACNNNNGTC 1 cut(s) 78
Psp1406I AACGTT 1 cut(s) 427
Psp6I CCWGG 3 cut(s) 143, 285, 654
PspFI CCCAGC 1 cut(s) 1241
PspGI CCWGG 3 cut(s) 143, 285, 654
PspN4I GGNNCC 3 cut(s) 18, 186, 380
PspPI GGNCC 3 cut(s) 260, 607, 1175
PsuI RGATCY 2 cut(s) 378, 461
RsaI GTAC 3 cut(s) 18, 700, 1218
RsaNI GTAC 3 cut(s) 17, 699, 1217
RseI CAYNNNNRTG 2 cut(s) 107, 1090
SaqAI TTAA 5 cut(s) 30, 150, 617, 794, 1160
Sau3AI GATC 7 cut(s) 321, 378, 461, 587, 986, 1053, 1095
Sau96I GGNCC 3 cut(s) 260, 607, 1175
SchI GAGTC 2 cut(s) 352, 508
ScrFI CCNGG 5 cut(s) 145, 287, 375, 376, 656
SfaNI GCATC 5 cut(s) 563, 813, 892, 1141, 1200
SinI GGWCC 3 cut(s) 260, 607, 1175
SmaI CCCGGG 1 cut(s) 376
SmiMI CAYNNNNRTG 2 cut(s) 107, 1090
SmlI CTYRAG 1 cut(s) 1159
SmoI CTYRAG 1 cut(s) 1159
SphI GCATGC 1 cut(s) 580
Sse9I AATT 6 cut(s) 151, 335, 594, 831, 923, 993
SsiI CCGC 7 cut(s) 59, 164, 231, 267, 283, 302, 1178
SspMI CTAG 3 cut(s) 347, 623, 1049
StyD4I CCNGG 5 cut(s) 143, 285, 373, 374, 654
StyI CCWWGG 2 cut(s) 622, 799
TaaI ACNGT 7 cut(s) 215, 221, 391, 953, 1038, 1077, 1136
TaiI ACGT 2 cut(s) 430, 1256
TaqI TCGA 6 cut(s) 128, 311, 543, 940, 963, 1256
TaqII GACCGA 1 cut(s) 220
TasI AATT 6 cut(s) 151, 335, 594, 831, 923, 993
TfiI GAWTC 5 cut(s) 125, 368, 731, 758, 981
Tru1I TTAA 5 cut(s) 30, 150, 617, 794, 1160
Tru9I TTAA 5 cut(s) 30, 150, 617, 794, 1160
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 7 cut(s) 125, 344, 779, 839, 873, 888, 1277
TspGWI ACGGA 6 cut(s) 77, 124, 244, 371, 677, 848
TspMI CCCGGG 1 cut(s) 374
Vha464I CTTAAG 1 cut(s) 1159
VpaK11BI GGWCC 3 cut(s) 260, 607, 1175
XagI CCTNNNNNAGG 1 cut(s) 626
XapI RAATTY 1 cut(s) 831
XbaI TCTAGA 1 cut(s) 1048
XceI RCATGY 1 cut(s) 580
XmaI CCCGGG 1 cut(s) 374
XmaJI CCTAGG 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 3 cut(s) 347, 623, 1049
Zsp2I ATGCAT 3 cut(s) 578, 907, 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.