Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G04830 AT1G04830 AT1G04830 AT4G13730 AT4G13730 AT4G13730 |
| fragaria_vesca | FvH4_1g03180 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 |
| malus_domestica | MD02G1030800.v1.1 MD04G1012300.v1.1 MD13G1283700.v1.1 |
| prunus_persica | Prupe.1G158400_v2.0.a1 Prupe.7G243700_v2.0.a1 Prupe.7G243700_v2.0.a1 |
| pyrus_communis | pycom02g02570 pycom04g00970 pycom04g00980 pycom15g15410 pycom420g01230 |
| rosa_chinensis | RchiOBHm_Chr2g0088311 RchiOBHm_Chr4g0414611 |
| rosa_laevigata | RLG00000008143 RLG00000015941 |
| rosa_multiflora | Rmu_sc0004235.1_g000035 Rmu_sc0007034.1_g000031 Rmu_sc0012211.1_g000015 |
| rosa_roxburghii | Rroxscaffold_5G00358370 |
| rosa_rugosa | Rorug01G0482800 Rorug04G0128100 Rorug04G0128200 |
| rosa_samantha | Rh2AG037900 Rh2BG037100 Rh2CG038200 Rh2DG037600 Rh4AG186900 Rh4BG185600 Rh4CG199000 Rh4DG185100 |
| rosa_wichuraiana | Rw2G002990 Rw4G015960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 689 |
| Acc65I | GGTACC | 1 cut(s) | 16 |
| AccB1I | GGYRCC | 1 cut(s) | 16 |
| AccI | GTMKAC | 1 cut(s) | 47 |
| AccII | CGCG | 1 cut(s) | 745 |
| AciI | CCGC | 7 cut(s) | 59, 164, 231, 267, 283, 302, 1178 |
| AclI | AACGTT | 1 cut(s) | 427 |
| AclWI | GGATC | 5 cut(s) | 373, 386, 456, 582, 1103 |
| AcsI | RAATTY | 1 cut(s) | 831 |
| AcuI | CTGAAG | 3 cut(s) | 489, 915, 1191 |
| AcyI | GRCGYC | 1 cut(s) | 1042 |
| AdeI | CACNNNGTG | 1 cut(s) | 42 |
| AfaI | GTAC | 3 cut(s) | 18, 700, 1218 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 212, 628, 661 |
| AflII | CTTAAG | 1 cut(s) | 1159 |
| AgsI | TTSAA | 5 cut(s) | 451, 559, 818, 923, 1274 |
| AjiI | CACGTC | 1 cut(s) | 1254 |
| AjnI | CCWGG | 3 cut(s) | 143, 285, 654 |
| AluBI | AGCT | 4 cut(s) | 350, 400, 490, 1188 |
| AluI | AGCT | 4 cut(s) | 350, 400, 490, 1188 |
| Alw26I | GTCTC | 4 cut(s) | 86, 301, 659, 936 |
| AlwI | GGATC | 5 cut(s) | 373, 386, 456, 582, 1103 |
| Ama87I | CYCGRG | 1 cut(s) | 374 |
| ApoI | RAATTY | 1 cut(s) | 831 |
| Asp718I | GGTACC | 1 cut(s) | 16 |
| AspA2I | CCTAGG | 1 cut(s) | 622 |
| AspLEI | GCGC | 1 cut(s) | 745 |
| AspS9I | GGNCC | 3 cut(s) | 260, 607, 1175 |
| AsuC2I | CCSGG | 2 cut(s) | 375, 376 |
| AsuHPI | GGTGA | 6 cut(s) | 16, 331, 538, 740, 1048, 1234 |
| AvaI | CYCGRG | 1 cut(s) | 374 |
| AvaII | GGWCC | 3 cut(s) | 260, 607, 1175 |
| AvrII | CCTAGG | 1 cut(s) | 622 |
| BamHI | GGATCC | 1 cut(s) | 378 |
| BanI | GGYRCC | 1 cut(s) | 16 |
| BbsI | GAAGAC | 2 cut(s) | 279, 1130 |
| BccI | CCATC | 4 cut(s) | 70, 71, 196, 618 |
| BceAI | ACGGC | 1 cut(s) | 178 |
| BciT130I | CCWGG | 3 cut(s) | 145, 287, 656 |
| BciVI | GTATCC | 1 cut(s) | 652 |
| BclI | TGATCA | 1 cut(s) | 321 |
| BcnI | CCSGG | 2 cut(s) | 375, 376 |
| BcoDI | GTCTC | 4 cut(s) | 86, 301, 659, 936 |
| BfaI | CTAG | 3 cut(s) | 347, 623, 1049 |
| BfrI | CTTAAG | 1 cut(s) | 1159 |
| BfuI | GTATCC | 1 cut(s) | 652 |
| BlnI | CCTAGG | 1 cut(s) | 622 |
| Bme1390I | CCNGG | 5 cut(s) | 145, 287, 375, 376, 656 |
| Bme18I | GGWCC | 3 cut(s) | 260, 607, 1175 |
| BmeT110I | CYCGRG | 1 cut(s) | 374 |
| BmgBI | CACGTC | 1 cut(s) | 1254 |
| BmgT120I | GGNCC | 3 cut(s) | 260, 607, 1175 |
| BmiI | GGNNCC | 3 cut(s) | 18, 186, 380 |
| BmrFI | CCNGG | 5 cut(s) | 145, 287, 375, 376, 656 |
| BmrI | ACTGGG | 1 cut(s) | 1202 |
| BmsI | GCATC | 5 cut(s) | 563, 813, 892, 1141, 1200 |
| BmuI | ACTGGG | 1 cut(s) | 1202 |
| BoxI | GACNNNNGTC | 1 cut(s) | 78 |
| BpiI | GAAGAC | 2 cut(s) | 279, 1130 |
| BpuMI | CCSGG | 2 cut(s) | 375, 376 |
| Bsa29I | ATCGAT | 1 cut(s) | 128 |
| BsaHI | GRCGYC | 1 cut(s) | 1042 |
| BsaI | GGTCTC | 2 cut(s) | 86, 659 |
| BsaJI | CCNNGG | 5 cut(s) | 143, 206, 374, 622, 799 |
| BsaWI | WCCGGW | 2 cut(s) | 19, 725 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 40, 70 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 212, 628, 661 |
| Bse1I | ACTGG | 2 cut(s) | 1197, 1224 |
| BseBI | CCWGG | 3 cut(s) | 145, 287, 656 |
| BseCI | ATCGAT | 1 cut(s) | 128 |
| BseDI | CCNNGG | 5 cut(s) | 143, 206, 374, 622, 799 |
| BseGI | GGATG | 6 cut(s) | 490, 610, 703, 828, 884, 1156 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 212, 628, 661 |
| BseMII | CTCAG | 2 cut(s) | 312, 435 |
| BseNI | ACTGG | 2 cut(s) | 1197, 1224 |
| BseRI | GAGGAG | 8 cut(s) | 42, 45, 74, 150, 355, 1094, 1240, 1243 |
| BseYI | CCCAGC | 1 cut(s) | 1241 |
| Bsh1236I | CGCG | 1 cut(s) | 745 |
| BshNI | GGYRCC | 1 cut(s) | 16 |
| BshVI | ATCGAT | 1 cut(s) | 128 |
| BsiHKCI | CYCGRG | 1 cut(s) | 374 |
| BsiSI | CCGG | 4 cut(s) | 20, 365, 375, 726 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 212, 628, 661 |
| BsmAI | GTCTC | 4 cut(s) | 86, 301, 659, 936 |
| BsmI | GAATGC | 1 cut(s) | 905 |
| Bso31I | GGTCTC | 2 cut(s) | 86, 659 |
| BsoBI | CYCGRG | 1 cut(s) | 374 |
| Bsp143I | GATC | 7 cut(s) | 321, 378, 461, 587, 986, 1053, 1095 |
| BspACI | CCGC | 7 cut(s) | 59, 164, 231, 267, 283, 302, 1178 |
| BspCNI | CTCAG | 2 cut(s) | 311, 436 |
| BspDI | ATCGAT | 1 cut(s) | 128 |
| BspFNI | CGCG | 1 cut(s) | 745 |
| BspLI | GGNNCC | 3 cut(s) | 18, 186, 380 |
| BspPI | GGATC | 5 cut(s) | 373, 386, 456, 582, 1103 |
| BspT107I | GGYRCC | 1 cut(s) | 16 |
| BspTI | CTTAAG | 1 cut(s) | 1159 |
| BspTNI | GGTCTC | 2 cut(s) | 86, 659 |
| BsrI | ACTGG | 2 cut(s) | 1197, 1224 |
| BssECI | CCNNGG | 5 cut(s) | 143, 206, 374, 622, 799 |
| BssMI | GATC | 7 cut(s) | 321, 378, 461, 587, 986, 1053, 1095 |
| BssNI | GRCGYC | 1 cut(s) | 1042 |
| BssT1I | CCWWGG | 2 cut(s) | 622, 799 |
| Bst2UI | CCWGG | 3 cut(s) | 145, 287, 656 |
| Bst4CI | ACNGT | 7 cut(s) | 215, 221, 391, 953, 1038, 1077, 1136 |
| Bst6I | CTCTTC | 2 cut(s) | 111, 554 |
| BstACI | GRCGYC | 1 cut(s) | 1042 |
| BstAFI | CTTAAG | 1 cut(s) | 1159 |
| BstC8I | GCNNGC | 2 cut(s) | 578, 582 |
| BstDEI | CTNAG | 3 cut(s) | 105, 298, 444 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 626 |
| BstF5I | GGATG | 6 cut(s) | 490, 610, 703, 828, 884, 1156 |
| BstFNI | CGCG | 1 cut(s) | 745 |
| BstHHI | GCGC | 1 cut(s) | 745 |
| BstKTI | GATC | 7 cut(s) | 324, 381, 464, 590, 989, 1056, 1098 |
| BstMAI | GTCTC | 4 cut(s) | 86, 301, 659, 936 |
| BstMBI | GATC | 7 cut(s) | 321, 378, 461, 587, 986, 1053, 1095 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 237 |
| BstNI | CCWGG | 3 cut(s) | 145, 287, 656 |
| BstNSI | RCATGY | 1 cut(s) | 580 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 78 |
| BstSCI | CCNGG | 5 cut(s) | 143, 285, 373, 374, 654 |
| BstUI | CGCG | 1 cut(s) | 745 |
| BstV2I | GAAGAC | 2 cut(s) | 279, 1130 |
| BstX2I | RGATCY | 2 cut(s) | 378, 461 |
| BstYI | RGATCY | 2 cut(s) | 378, 461 |
| Bsu15I | ATCGAT | 1 cut(s) | 128 |
| BsuI | GTATCC | 1 cut(s) | 652 |
| BsuTUI | ATCGAT | 1 cut(s) | 128 |
| BtgZI | GCGATG | 2 cut(s) | 174, 1223 |
| BtrI | CACGTC | 1 cut(s) | 1254 |
| BtsCI | GGATG | 6 cut(s) | 490, 610, 703, 828, 884, 1156 |
| Cac8I | GCNNGC | 2 cut(s) | 578, 582 |
| CfoI | GCGC | 1 cut(s) | 745 |
| Cfr13I | GGNCC | 3 cut(s) | 260, 607, 1175 |
| Cfr9I | CCCGGG | 1 cut(s) | 374 |
| ClaI | ATCGAT | 1 cut(s) | 128 |
| CseI | GACGC | 1 cut(s) | 1031 |
| Csp6I | GTAC | 3 cut(s) | 17, 699, 1217 |
| CviAII | CATG | 6 cut(s) | 40, 293, 516, 577, 890, 1025 |
| CviQI | GTAC | 3 cut(s) | 17, 699, 1217 |
| DdeI | CTNAG | 3 cut(s) | 105, 298, 444 |
| DpnI | GATC | 7 cut(s) | 323, 380, 463, 589, 988, 1055, 1097 |
| DpnII | GATC | 7 cut(s) | 321, 378, 461, 587, 986, 1053, 1095 |
| DraIII | CACNNNGTG | 1 cut(s) | 42 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 689 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 689 |
| Eam1104I | CTCTTC | 2 cut(s) | 111, 554 |
| EarI | CTCTTC | 2 cut(s) | 111, 554 |
| EciI | GGCGGA | 3 cut(s) | 48, 153, 256 |
| Eco130I | CCWWGG | 2 cut(s) | 622, 799 |
| Eco31I | GGTCTC | 2 cut(s) | 86, 659 |
| Eco47I | GGWCC | 3 cut(s) | 260, 607, 1175 |
| Eco57I | CTGAAG | 3 cut(s) | 489, 915, 1191 |
| Eco88I | CYCGRG | 1 cut(s) | 374 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 626 |
| EcoRII | CCWGG | 3 cut(s) | 143, 285, 654 |
| EcoT14I | CCWWGG | 2 cut(s) | 622, 799 |
| EcoT22I | ATGCAT | 3 cut(s) | 578, 907, 1087 |
| ErhI | CCWWGG | 2 cut(s) | 622, 799 |
| FaeI | CATG | 6 cut(s) | 43, 296, 519, 580, 893, 1028 |
| FatI | CATG | 6 cut(s) | 39, 292, 515, 576, 889, 1024 |
| FauI | CCCGC | 1 cut(s) | 290 |
| FauNDI | CATATG | 1 cut(s) | 1145 |
| FbaI | TGATCA | 1 cut(s) | 321 |
| FblI | GTMKAC | 1 cut(s) | 47 |
| FokI | GGATG | 6 cut(s) | 497, 597, 690, 835, 871, 1163 |
| FspBI | CTAG | 3 cut(s) | 347, 623, 1049 |
| GlaI | GCGC | 1 cut(s) | 744 |
| GsaI | CCCAGC | 1 cut(s) | 1245 |
| HapII | CCGG | 4 cut(s) | 20, 365, 375, 726 |
| HgaI | GACGC | 1 cut(s) | 1031 |
| HhaI | GCGC | 1 cut(s) | 745 |
| Hin1I | GRCGYC | 1 cut(s) | 1042 |
| Hin1II | CATG | 6 cut(s) | 43, 296, 519, 580, 893, 1028 |
| Hin6I | GCGC | 1 cut(s) | 743 |
| HinP1I | GCGC | 1 cut(s) | 743 |
| HincII | GTYRAC | 2 cut(s) | 441, 956 |
| HindII | GTYRAC | 2 cut(s) | 441, 956 |
| HindIII | AAGCTT | 2 cut(s) | 398, 1186 |
| HinfI | GANTC | 7 cut(s) | 125, 343, 368, 499, 731, 758, 981 |
| HpaII | CCGG | 4 cut(s) | 20, 365, 375, 726 |
| HphI | GGTGA | 6 cut(s) | 16, 331, 538, 740, 1048, 1234 |
| Hpy166II | GTNNAC | 5 cut(s) | 48, 431, 441, 701, 956 |
| Hpy188I | TCNGA | 4 cut(s) | 495, 508, 809, 986 |
| Hpy188III | TCNNGA | 7 cut(s) | 394, 591, 640, 707, 755, 941, 1049 |
| Hpy8I | GTNNAC | 5 cut(s) | 48, 431, 441, 701, 956 |
| Hpy99I | CGWCG | 3 cut(s) | 77, 199, 1258 |
| HpyAV | CCTTC | 8 cut(s) | 106, 177, 273, 310, 325, 513, 622, 1166 |
| HpyCH4III | ACNGT | 7 cut(s) | 215, 221, 391, 953, 1038, 1077, 1136 |
| HpyCH4IV | ACGT | 2 cut(s) | 427, 1253 |
| HpyCH4V | TGCA | 5 cut(s) | 576, 905, 992, 1085, 1154 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 237 |
| HpyF3I | CTNAG | 3 cut(s) | 105, 298, 444 |
| HpySE526I | ACGT | 2 cut(s) | 427, 1253 |
| Hsp92I | GRCGYC | 1 cut(s) | 1042 |
| Hsp92II | CATG | 6 cut(s) | 43, 296, 519, 580, 893, 1028 |
| HspAI | GCGC | 1 cut(s) | 743 |
| KpnI | GGTACC | 1 cut(s) | 20 |
| Ksp22I | TGATCA | 1 cut(s) | 321 |
| Kzo9I | GATC | 7 cut(s) | 321, 378, 461, 587, 986, 1053, 1095 |
| LmnI | GCTCC | 2 cut(s) | 145, 163 |
| LweI | GCATC | 5 cut(s) | 563, 813, 892, 1141, 1200 |
| MaeI | CTAG | 3 cut(s) | 347, 623, 1049 |
| MaeII | ACGT | 2 cut(s) | 427, 1253 |
| MaeIII | GTNAC | 5 cut(s) | 100, 215, 410, 860, 1266 |
| MalI | GATC | 7 cut(s) | 323, 380, 463, 589, 988, 1055, 1097 |
| MboI | GATC | 7 cut(s) | 321, 378, 461, 587, 986, 1053, 1095 |
| MboII | GAAGA | 9 cut(s) | 57, 128, 162, 284, 325, 571, 778, 887, 1130 |
| MflI | RGATCY | 2 cut(s) | 378, 461 |
| MluCI | AATT | 6 cut(s) | 151, 335, 594, 831, 923, 993 |
| MlyI | GAGTC | 2 cut(s) | 352, 508 |
| MmeI | TCCRAC | 2 cut(s) | 198, 1307 |
| Mph1103I | ATGCAT | 3 cut(s) | 578, 907, 1087 |
| MseI | TTAA | 5 cut(s) | 30, 150, 617, 794, 1160 |
| MslI | CAYNNNNRTG | 2 cut(s) | 107, 1090 |
| MspA1I | CMGCKG | 2 cut(s) | 302, 1180 |
| MspCI | CTTAAG | 1 cut(s) | 1159 |
| MspI | CCGG | 4 cut(s) | 20, 365, 375, 726 |
| MspR9I | CCNGG | 5 cut(s) | 145, 287, 375, 376, 656 |
| Mva1269I | GAATGC | 1 cut(s) | 905 |
| MvaI | CCWGG | 3 cut(s) | 145, 287, 656 |
| MvnI | CGCG | 1 cut(s) | 745 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 237 |
| NciI | CCSGG | 2 cut(s) | 375, 376 |
| NdeI | CATATG | 1 cut(s) | 1145 |
| NdeII | GATC | 7 cut(s) | 321, 378, 461, 587, 986, 1053, 1095 |
| NlaIII | CATG | 6 cut(s) | 43, 296, 519, 580, 893, 1028 |
| NlaIV | GGNNCC | 3 cut(s) | 18, 186, 380 |
| NmuCI | GTSAC | 1 cut(s) | 100 |
| NsiI | ATGCAT | 3 cut(s) | 578, 907, 1087 |
| NspI | RCATGY | 1 cut(s) | 580 |
| PaeI | GCATGC | 1 cut(s) | 580 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 203 |
| PctI | GAATGC | 1 cut(s) | 905 |
| PfeI | GAWTC | 5 cut(s) | 125, 368, 731, 758, 981 |
| PfoI | TCCNGGA | 1 cut(s) | 654 |
| PleI | GAGTC | 2 cut(s) | 351, 507 |
| PpsI | GAGTC | 2 cut(s) | 351, 507 |
| PshAI | GACNNNNGTC | 1 cut(s) | 78 |
| Psp1406I | AACGTT | 1 cut(s) | 427 |
| Psp6I | CCWGG | 3 cut(s) | 143, 285, 654 |
| PspFI | CCCAGC | 1 cut(s) | 1241 |
| PspGI | CCWGG | 3 cut(s) | 143, 285, 654 |
| PspN4I | GGNNCC | 3 cut(s) | 18, 186, 380 |
| PspPI | GGNCC | 3 cut(s) | 260, 607, 1175 |
| PsuI | RGATCY | 2 cut(s) | 378, 461 |
| RsaI | GTAC | 3 cut(s) | 18, 700, 1218 |
| RsaNI | GTAC | 3 cut(s) | 17, 699, 1217 |
| RseI | CAYNNNNRTG | 2 cut(s) | 107, 1090 |
| SaqAI | TTAA | 5 cut(s) | 30, 150, 617, 794, 1160 |
| Sau3AI | GATC | 7 cut(s) | 321, 378, 461, 587, 986, 1053, 1095 |
| Sau96I | GGNCC | 3 cut(s) | 260, 607, 1175 |
| SchI | GAGTC | 2 cut(s) | 352, 508 |
| ScrFI | CCNGG | 5 cut(s) | 145, 287, 375, 376, 656 |
| SfaNI | GCATC | 5 cut(s) | 563, 813, 892, 1141, 1200 |
| SinI | GGWCC | 3 cut(s) | 260, 607, 1175 |
| SmaI | CCCGGG | 1 cut(s) | 376 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 107, 1090 |
| SmlI | CTYRAG | 1 cut(s) | 1159 |
| SmoI | CTYRAG | 1 cut(s) | 1159 |
| SphI | GCATGC | 1 cut(s) | 580 |
| Sse9I | AATT | 6 cut(s) | 151, 335, 594, 831, 923, 993 |
| SsiI | CCGC | 7 cut(s) | 59, 164, 231, 267, 283, 302, 1178 |
| SspMI | CTAG | 3 cut(s) | 347, 623, 1049 |
| StyD4I | CCNGG | 5 cut(s) | 143, 285, 373, 374, 654 |
| StyI | CCWWGG | 2 cut(s) | 622, 799 |
| TaaI | ACNGT | 7 cut(s) | 215, 221, 391, 953, 1038, 1077, 1136 |
| TaiI | ACGT | 2 cut(s) | 430, 1256 |
| TaqI | TCGA | 6 cut(s) | 128, 311, 543, 940, 963, 1256 |
| TaqII | GACCGA | 1 cut(s) | 220 |
| TasI | AATT | 6 cut(s) | 151, 335, 594, 831, 923, 993 |
| TfiI | GAWTC | 5 cut(s) | 125, 368, 731, 758, 981 |
| Tru1I | TTAA | 5 cut(s) | 30, 150, 617, 794, 1160 |
| Tru9I | TTAA | 5 cut(s) | 30, 150, 617, 794, 1160 |
| TseFI | GTSAC | 1 cut(s) | 100 |
| Tsp45I | GTSAC | 1 cut(s) | 100 |
| TspDTI | ATGAA | 7 cut(s) | 125, 344, 779, 839, 873, 888, 1277 |
| TspGWI | ACGGA | 6 cut(s) | 77, 124, 244, 371, 677, 848 |
| TspMI | CCCGGG | 1 cut(s) | 374 |
| Vha464I | CTTAAG | 1 cut(s) | 1159 |
| VpaK11BI | GGWCC | 3 cut(s) | 260, 607, 1175 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 626 |
| XapI | RAATTY | 1 cut(s) | 831 |
| XbaI | TCTAGA | 1 cut(s) | 1048 |
| XceI | RCATGY | 1 cut(s) | 580 |
| XmaI | CCCGGG | 1 cut(s) | 374 |
| XmaJI | CCTAGG | 1 cut(s) | 622 |
| XmiI | GTMKAC | 1 cut(s) | 47 |
| XspI | CTAG | 3 cut(s) | 347, 623, 1049 |
| Zsp2I | ATGCAT | 3 cut(s) | 578, 907, 1087 |