Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002112

Physical Location & Seq

Genomic Coordinates Forward (+)

870376 .. 872390

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTTCACTCACCTCAAATGGTGAAGAAGCCGGTCCCCGAATGGCTCAACAGCTCGCTCTGGTCCTCCTCCACGCCCTCCCCTTCCATCGACGACGATCGCGTCCAGCGCTACACCTCCAATCCCACCGCCGCCGGCCTGACCACCGAAATTTCAAGTTCTTCTGCCTCAGACTCTGAGCCGGCTTCCACGGTTCACCCGCCAATCCCTGTTGCTCCTCCCAAATCCACCAGGGAAGACAAGCCTCCTCCCGAGCCCCAATCCACAGATTCATTTCCGGATCACGAAGACAAGAGCAATAACACCACTCCGTCCCCCGAAGATATCTCCAGACAGTCTCAGCTCTTGGCCGAGCTGTCGAGGAAGGTGATTAATTTGCGTGAATTGCGGAGAATTTCATCGCAGGGCATACCAGATGGTGCTGGGATACGGTCTACAGTCTGGAAGCTTTTACTCGGATATCTACCACCAGATCGGGGGCTTTGGTCGTCTGAGTTAGCTAAAAAGAGGTCACAGTACAAGCATTTTAAAGATGAGCTTTTGATGAATCCTTCAGAAATCACGAGGAAGATGGATAATGGCACTACTTGCGACCATGATGAATTAAAATGTCAAAGCAAGGGGTTGCTATCAAGATCTGAAATACCTCATGGGGAGCATCCATTGAGTCTTGGGAAGTCCAGCGTCTGGAATCAGTTCTTTCAGGACACAGATCGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

241

Amino Acids

26.76

Weight (kDa)

6.17

Isoelectric Point (pI)

66.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04830 AT1G04830 AT1G04830 AT4G13730 AT4G13730 AT4G13730
fragaria_vesca	FvH4_1g03180 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770
malus_domestica	MD02G1030800.v1.1 MD04G1012300.v1.1 MD13G1283700.v1.1
prunus_persica	Prupe.1G158400_v2.0.a1 Prupe.7G243700_v2.0.a1 Prupe.7G243700_v2.0.a1
pyrus_communis	pycom02g02570 pycom04g00970 pycom04g00980 pycom15g15410 pycom420g01230
rosa_chinensis	RchiOBHm_Chr2g0088311 RchiOBHm_Chr4g0414611
rosa_laevigata	RLG00000008143 RLG00000015941
rosa_multiflora	Rmu_sc0004235.1_g000035 Rmu_sc0007034.1_g000031 Rmu_sc0012211.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358370
rosa_rugosa	Rorug01G0482800 Rorug04G0128100 Rorug04G0128200
rosa_samantha	Rh2AG037900 Rh2BG037100 Rh2CG038200 Rh2DG037600 Rh4AG186900 Rh4BG185600 Rh4CG199000 Rh4DG185100
rosa_wichuraiana	Rw2G002990 Rw4G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccI	GTMKAC	1 cut(s)	434
AccII	CGCG	1 cut(s)	102
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	4 cut(s)	129, 132, 200, 388
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	150, 393
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	1 cut(s)	518
AfeI	AGCGCT	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	476, 687
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	6 cut(s)	54, 343, 355, 448, 500, 538
AluI	AGCT	6 cut(s)	54, 343, 355, 448, 500, 538
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	288
AlwNI	CAGNNNCTG	2 cut(s)	176, 687
Ama87I	CYCGRG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	277
Aor51HI	AGCGCT	1 cut(s)	110
AoxI	GGCC	2 cut(s)	136, 348
ApoI	RAATTY	2 cut(s)	150, 393
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	695
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	34, 63
AsuHPI	GGTGA	4 cut(s)	3, 34, 188, 379
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	34, 63
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	562
BbsI	GAAGAC	2 cut(s)	243, 294
BccI	CCATC	3 cut(s)	95, 410, 565
BciT130I	CCWGG	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	2 cut(s)	34, 63
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	34, 63
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	667
BpiI	GAAGAC	2 cut(s)	243, 294
BpmI	CTGGAG	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	715
BsaJI	CCNNGG	2 cut(s)	189, 231
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 687
Bse118I	RCCGGY	3 cut(s)	31, 134, 181
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	232
BseCI	ATCGAT	1 cut(s)	715
BseDI	CCNNGG	2 cut(s)	189, 231
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	2 cut(s)	476, 687
BseMII	CTCAG	4 cut(s)	168, 183, 353, 483
BseRI	GAGGAG	3 cut(s)	58, 207, 237
BseYI	CCCAGC	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	138, 350
BshVI	ATCGAT	1 cut(s)	715
BsiEI	CGRYCG	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	4 cut(s)	32, 135, 182, 278
BslFI	GGGAC	2 cut(s)	20, 298
BslI	CCNNNNNNNGG	2 cut(s)	476, 687
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	20, 298
BsnI	GGCC	2 cut(s)	138, 350
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	6 cut(s)	97, 280, 472, 635, 712, 716
BspACI	CCGC	4 cut(s)	129, 132, 200, 388
BspANI	GGCC	2 cut(s)	138, 350
BspCNI	CTCAG	4 cut(s)	169, 182, 352, 484
BspDI	ATCGAT	1 cut(s)	715
BspEI	TCCGGA	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	288
BsrFI	RCCGGY	3 cut(s)	31, 134, 181
BssAI	RCCGGY	3 cut(s)	31, 134, 181
BssECI	CCNNGG	2 cut(s)	189, 231
BssMI	GATC	6 cut(s)	97, 280, 472, 635, 712, 716
BssSI	CACGAG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	5 cut(s)	193, 336, 432, 439, 516
BstAPI	GCANNNNNTGC	1 cut(s)	588
BstC8I	GCNNGC	3 cut(s)	56, 136, 183
BstDEI	CTNAG	4 cut(s)	169, 177, 339, 492
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	6 cut(s)	100, 283, 475, 638, 715, 719
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	6 cut(s)	97, 280, 472, 635, 712, 716
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 385, 588
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	435
BstUI	CGCG	1 cut(s)	102
BstV2I	GAAGAC	2 cut(s)	243, 294
BstX2I	RGATCY	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	635
Bsu15I	ATCGAT	1 cut(s)	715
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	138, 350
BsuTUI	ATCGAT	1 cut(s)	715
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	658
Cac8I	GCNNGC	3 cut(s)	56, 136, 183
CaiI	CAGNNNCTG	2 cut(s)	176, 687
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	3 cut(s)	31, 134, 181
Cfr13I	GGNCC	2 cut(s)	34, 63
ClaI	ATCGAT	1 cut(s)	715
CseI	GACGC	2 cut(s)	91, 673
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	2 cut(s)	596, 650
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	4 cut(s)	169, 177, 339, 492
DpnI	GATC	6 cut(s)	99, 282, 474, 637, 714, 718
DpnII	GATC	6 cut(s)	97, 280, 472, 635, 712, 716
DraI	TTTAAA	1 cut(s)	529
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	258
Eco32I	GATATC	2 cut(s)	325, 461
Eco47I	GGWCC	2 cut(s)	34, 63
Eco47III	AGCGCT	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	230
EcoRV	GATATC	2 cut(s)	325, 461
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	2 cut(s)	599, 653
FaiI	YATR	4 cut(s)	410, 597, 651, 721
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	2 cut(s)	20, 298
FatI	CATG	2 cut(s)	595, 649
FauI	CCCGC	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	645
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	132
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	138, 350
HapII	CCGG	4 cut(s)	32, 135, 182, 278
HgaI	GACGC	2 cut(s)	91, 673
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	599, 653
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	5 cut(s)	173, 269, 547, 667, 691
HpaII	CCGG	4 cut(s)	32, 135, 182, 278
HphI	GGTGA	4 cut(s)	3, 34, 188, 379
Hpy166II	GTNNAC	2 cut(s)	196, 435
Hpy188I	TCNGA	6 cut(s)	172, 178, 458, 493, 556, 640
Hpy188III	TCNNGA	9 cut(s)	251, 278, 284, 330, 442, 562, 633, 688, 704
Hpy8I	GTNNAC	2 cut(s)	196, 435
Hpy99I	CGWCG	2 cut(s)	95, 98
HpyAV	CCTTC	3 cut(s)	93, 358, 561
HpyCH4III	ACNGT	5 cut(s)	193, 336, 432, 439, 516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 385, 588
HpyF3I	CTNAG	4 cut(s)	169, 177, 339, 492
Hsp92II	CATG	2 cut(s)	599, 653
HspAI	GCGC	1 cut(s)	109
Kpn2I	TCCGGA	1 cut(s)	277
KroI	GCCGGC	2 cut(s)	134, 181
KroNI	GCCGGC	2 cut(s)	136, 183
Kzo9I	GATC	6 cut(s)	97, 280, 472, 635, 712, 716
LmnI	GCTCC	2 cut(s)	220, 655
LweI	GCATC	1 cut(s)	667
MaeIII	GTNAC	1 cut(s)	510
MalI	GATC	6 cut(s)	99, 282, 474, 637, 714, 718
MboI	GATC	6 cut(s)	97, 280, 472, 635, 712, 716
MboII	GAAGA	6 cut(s)	37, 153, 248, 299, 332, 580
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	5 cut(s)	150, 373, 383, 393, 602
MlyI	GAGTC	2 cut(s)	167, 676
MroI	TCCGGA	1 cut(s)	277
MroNI	GCCGGC	2 cut(s)	134, 181
MroXI	GAANNNNTTC	1 cut(s)	695
MseI	TTAA	3 cut(s)	372, 528, 605
MspI	CCGG	4 cut(s)	32, 135, 182, 278
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	108, 385, 588
NaeI	GCCGGC	2 cut(s)	136, 183
NdeII	GATC	6 cut(s)	97, 280, 472, 635, 712, 716
NgoMIV	GCCGGC	2 cut(s)	134, 181
NlaIII	CATG	2 cut(s)	599, 653
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	2 cut(s)	136, 183
PdmI	GAANNNNTTC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	269, 547, 691
PflMI	CCANNNNNTGG	1 cut(s)	687
PkrI	GCNGC	1 cut(s)	133
Ple19I	CGATCG	1 cut(s)	100
PleI	GAGTC	2 cut(s)	167, 675
PpsI	GAGTC	2 cut(s)	167, 675
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	34, 63
PstNI	CAGNNNCTG	2 cut(s)	176, 687
PsuI	RGATCY	1 cut(s)	635
PvuI	CGATCG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	3 cut(s)	372, 528, 605
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	6 cut(s)	97, 280, 472, 635, 712, 716
Sau96I	GGNCC	2 cut(s)	34, 63
SchI	GAGTC	2 cut(s)	167, 676
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	34, 63
Sse9I	AATT	5 cut(s)	150, 373, 383, 393, 602
SsiI	CCGC	4 cut(s)	129, 132, 200, 388
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	5 cut(s)	193, 336, 432, 439, 516
TaqI	TCGA	3 cut(s)	90, 359, 715
TasI	AATT	5 cut(s)	150, 373, 383, 393, 602
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	269, 547, 691
Tru1I	TTAA	3 cut(s)	372, 528, 605
Tru9I	TTAA	3 cut(s)	372, 528, 605
TseFI	GTSAC	1 cut(s)	510
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	4 cut(s)	261, 387, 560, 615
TspGWI	ACGGA	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	687
VpaK11BI	GGWCC	2 cut(s)	34, 63
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	2 cut(s)	150, 393
XmiI	GTMKAC	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.