Prupe.1G158400_v2.0.a1

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
12554867 .. 12560096
5230 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G158400.1

Sequence Viewer

Length: 1383 bp
ATGTTTCACTCACCTCAAATGGTGAAGAAACGAGTCCCAGAATGGCTCAACAGCTCGCTCTGGTCTTCTACGCCTTCTCCTTCTCTCGACGACGATCGCGTTCAACCCTACACCTCCAAGCCCACCGCCACCACCACAATCACCAGTTCTTCTTCTACCTCTGACTACGAGCCACCGTCCATGGTTGACCCACCAATCCCTGTGCCCCCTCCCAAACCCACCAGGGAAGACAAGCCTCCTCCGCAGCCCCAATCCACAGATTCACTCCCTAATCACGAAGACAAGAACAACACCACTCCTTCCCCCGAAGACATCTCCAGGCAGGCTCAGCTCTTGGTCGAGCTATCAAGAAAGACGATTAATTTGCGCGATTTGCGGAGAATTGCGTCGCAGGGCATACCAGATGGTGCCGGCATACGTTCTACTGTGTGGAAGCTTTTACTTGGATATCTACCATCAGATCGGGGGCTTTGGTCATCTGAGTTAACTAAAAAGAGGTCACAGTACAAGCATTTTAAAGATGAGCTTTTGATGAATCCTTCAGAAATCACAAGGAAGATGGATAACTGTACAAATTGTGACACTGATGAATCAAAAGGTCAAAGCAAAGGGTTGCTATCAAGATCAGAAATAACTCATGGCGAGCATCCATTGAGTCTTGGGCAGTCCAGCGTCTGGAATCAGTTCTTCCAGGACACAGAGATCATAGAGCAGATTGACCGAGATGTAAAGCGTACTCATCCAGACTTGCACTTTTTCTCTGGGGACTCTTCAGATGCTAAATCTAATCAGGATGCTTTGAAGAACATCCTGATTGTATTTGCCAAGCTAAATCCCGGTATAAGATATGTTCAAGGGATGAACGAAATTTTGGCACCACTGTTCTATGTATTCAAGACTGATCCAAATGAGGAAGATGCGGCCTCTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAATTATTGAGTGGCTTCCGGGATCATTTCTGTCAGCAACTTGATAATAGTGTTGTGGGAATTCGTTCCACTATAACAAAATTGTCACAGCTTTTGAAGGAACACGATGAAGAGCTATGGCGTCATCTTGAGATCACAACCAAAGTCAATCCCCAATTTTATGCATTTAGGTGGATCACCCTTCTCTTAACCCAGGAATTCAATTTCGCAGACAGCCTTCACATTTGGGATACACTTTTAAGTGACCCGGAAGGTCCTCAGGAAACCCTTCTTCGAGTATGCTGTGCAATGTTGATTCTCATTCGGAGGCGCTTACTAGCAGGTGATTTTACCTCTAATCTCAAATTACTGCAGAACTATCCTCCAACAAACATCAGACATCTGCTGTATGTTGCCCACAAGTTGCGTGTACAATCCTCAGGCTAA

Protein Analysis

461

Amino Acids

52.34

Weight (kDa)

5.94

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1268
Acc36I ACCTGC 1 cut(s) 1268
AccB1I GGYRCC 2 cut(s) 407, 874
AccB7I CCANNNNNTGG 1 cut(s) 675
AccII CGCG 2 cut(s) 99, 369
AciI CCGC 4 cut(s) 126, 242, 376, 920
AclWI GGATC 3 cut(s) 896, 987, 1139
AcsI RAATTY 3 cut(s) 867, 1017, 1154
AcuI CTGAAG 3 cut(s) 525, 756, 951
AcyI GRCGYC 1 cut(s) 1078
AfaI GTAC 4 cut(s) 506, 571, 736, 1368
AfiI CCNNNNNNNGG 1 cut(s) 675
AgsI TTSAA 7 cut(s) 104, 802, 854, 895, 959, 1054, 1159
AjnI CCWGG 4 cut(s) 221, 317, 690, 1149
AjuI GAANNNNNNNTTGG 2 cut(s) 854, 886
AluBI AGCT 8 cut(s) 54, 331, 343, 436, 526, 829, 1048, 1072
AluI AGCT 8 cut(s) 54, 331, 343, 436, 526, 829, 1048, 1072
AlwI GGATC 3 cut(s) 896, 987, 1139
AlwNI CAGNNNCTG 1 cut(s) 675
AoxI GGCC 1 cut(s) 921
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 3 cut(s) 867, 1017, 1154
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AseI ATTAAT 1 cut(s) 360
Asp700I GAANNNNTTC 3 cut(s) 683, 1021, 1224
AspLEI GCGC 2 cut(s) 369, 1269
AspS9I GGNCC 1 cut(s) 1211
AsuC2I CCSGG 3 cut(s) 837, 977, 1205
AsuHPI GGTGA 5 cut(s) 3, 34, 133, 1126, 1292
AvaII GGWCC 1 cut(s) 1211
AxyI CCTNAGG 2 cut(s) 1215, 1375
BaeGI GKGCMC 1 cut(s) 207
BanI GGYRCC 2 cut(s) 407, 874
BbsI GAAGAC 4 cut(s) 57, 234, 285, 315
BbvI GCAGC 1 cut(s) 256
BccI CCATC 3 cut(s) 398, 463, 553
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BciT130I CCWGG 4 cut(s) 223, 319, 692, 1151
BciVI GTATCC 1 cut(s) 1180
BcnI CCSGG 3 cut(s) 837, 977, 1205
BfaI CTAG 1 cut(s) 1274
BfmI CTRYAG 1 cut(s) 1307
BfoI RGCGCY 1 cut(s) 1270
BfuAI ACCTGC 1 cut(s) 1268
BfuI GTATCC 1 cut(s) 1180
BisI GCNGC 2 cut(s) 245, 921
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 2 cut(s) 246, 922
Bme1390I CCNGG 7 cut(s) 223, 319, 692, 837, 977, 1151, 1205
Bme18I GGWCC 1 cut(s) 1211
BmgT120I GGNCC 1 cut(s) 1211
BmiI GGNNCC 2 cut(s) 409, 876
BmrFI CCNGG 7 cut(s) 223, 319, 692, 837, 977, 1151, 1205
BmsI GCATC 4 cut(s) 655, 766, 784, 907
BpiI GAAGAC 4 cut(s) 57, 234, 285, 315
BpmI CTGGAG 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 1106
BpuMI CCSGG 3 cut(s) 837, 977, 1205
BsaHI GRCGYC 1 cut(s) 1078
BsaJI CCNNGG 3 cut(s) 180, 222, 1149
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 144
Bse21I CCTNAGG 2 cut(s) 1215, 1375
Bse3DI GCAATG 1 cut(s) 1251
BseBI CCWGG 4 cut(s) 223, 319, 692, 1151
BseDI CCNNGG 3 cut(s) 180, 222, 1149
BseGI GGATG 5 cut(s) 646, 739, 799, 807, 864
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMI GCAATG 1 cut(s) 1251
BseMII CTCAG 3 cut(s) 341, 471, 1229
BseNI ACTGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 228
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 2 cut(s) 99, 369
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 923
BshNI GGYRCC 2 cut(s) 407, 874
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 4 cut(s) 411, 837, 976, 1205
BslFI GGGAC 2 cut(s) 20, 779
BslI CCNNNNNNNGG 1 cut(s) 675
BsmFI GGGAC 2 cut(s) 20, 779
BsnI GGCC 1 cut(s) 923
Bsp1286I GDGCHC 1 cut(s) 207
Bsp1407I TGTACA 2 cut(s) 569, 1366
Bsp143I GATC 8 cut(s) 94, 460, 623, 702, 901, 979, 1089, 1131
Bsp1720I GCTNAGC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 4 cut(s) 126, 242, 376, 920
BspANI GGCC 1 cut(s) 923
BspCNI CTCAG 3 cut(s) 340, 472, 1228
BspFNI CGCG 2 cut(s) 99, 369
BspLI GGNNCC 2 cut(s) 409, 876
BspMAI CTGCAG 1 cut(s) 1311
BspMI ACCTGC 1 cut(s) 1268
BspPI GGATC 3 cut(s) 896, 987, 1139
BspQI GCTCTTC 1 cut(s) 1062
BspT107I GGYRCC 2 cut(s) 407, 874
BsrDI GCAATG 1 cut(s) 1251
BsrFI RCCGGY 1 cut(s) 410
BsrGI TGTACA 2 cut(s) 569, 1366
BsrI ACTGG 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 3 cut(s) 180, 222, 1149
BssMI GATC 8 cut(s) 94, 460, 623, 702, 901, 979, 1089, 1131
BssNI GRCGYC 1 cut(s) 1078
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 4 cut(s) 223, 319, 692, 1151
Bst4CI ACNGT 5 cut(s) 177, 427, 504, 569, 882
Bst6I CTCTTC 2 cut(s) 775, 1062
BstACI GRCGYC 1 cut(s) 1078
BstAUI TGTACA 2 cut(s) 569, 1366
BstC8I GCNNGC 4 cut(s) 56, 324, 412, 644
BstDEI CTNAG 4 cut(s) 327, 480, 1215, 1375
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 5 cut(s) 646, 739, 799, 807, 864
BstFNI CGCG 2 cut(s) 99, 369
BstH2I RGCGCY 1 cut(s) 1270
BstHHI GCGC 2 cut(s) 369, 1269
BstKTI GATC 8 cut(s) 97, 463, 626, 705, 904, 982, 1092, 1134
BstMBI GATC 8 cut(s) 94, 460, 623, 702, 901, 979, 1089, 1131
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 4 cut(s) 241, 328, 373, 926
BstNI CCWGG 4 cut(s) 223, 319, 692, 1151
BstSCI CCNGG 7 cut(s) 221, 317, 690, 835, 975, 1149, 1203
BstSFI CTRYAG 1 cut(s) 1307
BstSLI GKGCMC 1 cut(s) 207
BstUI CGCG 2 cut(s) 99, 369
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 4 cut(s) 57, 234, 285, 315
Bsu36I CCTNAGG 2 cut(s) 1215, 1375
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 1 cut(s) 923
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 5 cut(s) 646, 739, 799, 807, 864
BtsIMutI CAGTG 2 cut(s) 582, 878
BveI ACCTGC 1 cut(s) 1268
Cac8I GCNNGC 4 cut(s) 56, 324, 412, 644
CaiI CAGNNNCTG 1 cut(s) 675
CfoI GCGC 2 cut(s) 369, 1269
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 1211
CseI GACGC 3 cut(s) 375, 661, 1067
Csp6I GTAC 4 cut(s) 505, 570, 735, 1367
CviAII CATG 2 cut(s) 181, 638
CviQI GTAC 4 cut(s) 505, 570, 735, 1367
DdeI CTNAG 4 cut(s) 327, 480, 1215, 1375
DpnI GATC 8 cut(s) 96, 462, 625, 704, 903, 981, 1091, 1133
DpnII GATC 8 cut(s) 94, 460, 623, 702, 901, 979, 1089, 1131
DraI TTTAAA 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 775, 1062
EarI CTCTTC 2 cut(s) 775, 1062
Eco130I CCWWGG 1 cut(s) 180
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 1211
Eco57I CTGAAG 3 cut(s) 525, 756, 951
Eco81I CCTNAGG 2 cut(s) 1215, 1375
EcoO109I RGGNCCY 1 cut(s) 1211
EcoRI GAATTC 2 cut(s) 1017, 1154
EcoRII CCWGG 4 cut(s) 221, 317, 690, 1149
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 1123
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 184, 641
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 2 cut(s) 20, 779
FatI CATG 2 cut(s) 180, 637
Fnu4HI GCNGC 2 cut(s) 245, 921
FokI GGATG 5 cut(s) 633, 726, 794, 806, 871
Fsp4HI GCNGC 2 cut(s) 245, 921
FspBI CTAG 1 cut(s) 1274
GlaI GCGC 2 cut(s) 368, 1268
GluI GCNGC 2 cut(s) 245, 921
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 1270
HaeIII GGCC 1 cut(s) 923
HapII CCGG 4 cut(s) 411, 837, 976, 1205
HgaI GACGC 3 cut(s) 375, 661, 1067
HhaI GCGC 2 cut(s) 369, 1269
Hin1I GRCGYC 1 cut(s) 1078
Hin1II CATG 2 cut(s) 184, 641
Hin6I GCGC 2 cut(s) 367, 1267
HinP1I GCGC 2 cut(s) 367, 1267
HincII GTYRAC 2 cut(s) 187, 486
HindII GTYRAC 2 cut(s) 187, 486
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 8 cut(s) 33, 260, 535, 590, 655, 679, 767, 1252
HpaI GTTAAC 1 cut(s) 486
HpaII CCGG 4 cut(s) 411, 837, 976, 1205
HphI GGTGA 5 cut(s) 3, 34, 133, 1126, 1292
Hpy166II GTNNAC 3 cut(s) 187, 486, 1367
Hpy188I TCNGA 8 cut(s) 163, 460, 481, 544, 628, 775, 1263, 1334
Hpy8I GTNNAC 3 cut(s) 187, 486, 1367
Hpy99I CGWCG 3 cut(s) 92, 95, 391
HpyAV CCTTC 9 cut(s) 84, 90, 309, 549, 1048, 1148, 1184, 1202, 1235
HpyCH4III ACNGT 5 cut(s) 177, 427, 504, 569, 882
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 4 cut(s) 751, 1121, 1244, 1309
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 328, 373, 926
HpyF3I CTNAG 4 cut(s) 327, 480, 1215, 1375
HpySE526I ACGT 1 cut(s) 418
Hsp92I GRCGYC 1 cut(s) 1078
Hsp92II CATG 2 cut(s) 184, 641
HspAI GCGC 2 cut(s) 367, 1267
KroI GCCGGC 1 cut(s) 410
KroNI GCCGGC 1 cut(s) 412
KspAI GTTAAC 1 cut(s) 486
Kzo9I GATC 8 cut(s) 94, 460, 623, 702, 901, 979, 1089, 1131
LguI GCTCTTC 1 cut(s) 1062
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 4 cut(s) 655, 766, 784, 907
MaeI CTAG 1 cut(s) 1274
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 4 cut(s) 498, 578, 1041, 1199
MalI GATC 8 cut(s) 96, 462, 625, 704, 903, 981, 1091, 1133
MboI GATC 8 cut(s) 94, 460, 623, 702, 901, 979, 1089, 1131
MhlI GDGCHC 1 cut(s) 207
MlyI GAGTC 3 cut(s) 42, 664, 761
MmeI TCCRAC 1 cut(s) 1346
Mph1103I ATGCAT 1 cut(s) 1123
MroNI GCCGGC 1 cut(s) 410
MroXI GAANNNNTTC 3 cut(s) 683, 1021, 1224
MseI TTAA 5 cut(s) 360, 485, 516, 1145, 1196
MslI CAYNNNNRTG 1 cut(s) 1126
MspI CCGG 4 cut(s) 411, 837, 976, 1205
MspR9I CCNGG 7 cut(s) 223, 319, 692, 837, 977, 1151, 1205
MvaI CCWGG 4 cut(s) 223, 319, 692, 1151
MvnI CGCG 2 cut(s) 99, 369
MwoI GCNNNNNNNGC 4 cut(s) 241, 328, 373, 926
NaeI GCCGGC 1 cut(s) 412
NciI CCSGG 3 cut(s) 837, 977, 1205
NcoI CCATGG 1 cut(s) 180
NdeII GATC 8 cut(s) 94, 460, 623, 702, 901, 979, 1089, 1131
NgoMIV GCCGGC 1 cut(s) 410
NlaIII CATG 2 cut(s) 184, 641
NlaIV GGNNCC 2 cut(s) 409, 876
NmuCI GTSAC 4 cut(s) 498, 578, 1041, 1199
NsiI ATGCAT 1 cut(s) 1123
PaqCI CACCTGC 1 cut(s) 1268
PciSI GCTCTTC 1 cut(s) 1062
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdiI GCCGGC 1 cut(s) 412
PdmI GAANNNNTTC 3 cut(s) 683, 1021, 1224
PfeI GAWTC 5 cut(s) 260, 535, 590, 679, 1252
PflMI CCANNNNNTGG 1 cut(s) 675
PfoI TCCNGGA 2 cut(s) 690, 975
PkrI GCNGC 2 cut(s) 246, 922
Ple19I CGATCG 1 cut(s) 97
PleI GAGTC 3 cut(s) 41, 663, 761
PpsI GAGTC 3 cut(s) 41, 663, 761
PpuMI RGGWCCY 1 cut(s) 1211
PshBI ATTAAT 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 1211
Psp6I CCWGG 4 cut(s) 221, 317, 690, 1149
PspGI CCWGG 4 cut(s) 221, 317, 690, 1149
PspN4I GGNNCC 2 cut(s) 409, 876
PspPI GGNCC 1 cut(s) 1211
PspPPI RGGWCCY 1 cut(s) 1211
PstI CTGCAG 1 cut(s) 1311
PstNI CAGNNNCTG 1 cut(s) 675
PvuI CGATCG 1 cut(s) 97
RsaI GTAC 4 cut(s) 506, 571, 736, 1368
RsaNI GTAC 4 cut(s) 505, 570, 735, 1367
RseI CAYNNNNRTG 1 cut(s) 1126
SapI GCTCTTC 1 cut(s) 1062
SaqAI TTAA 5 cut(s) 360, 485, 516, 1145, 1196
SatI GCNGC 2 cut(s) 245, 921
Sau3AI GATC 8 cut(s) 94, 460, 623, 702, 901, 979, 1089, 1131
Sau96I GGNCC 1 cut(s) 1211
SchI GAGTC 3 cut(s) 42, 664, 761
ScrFI CCNGG 7 cut(s) 223, 319, 692, 837, 977, 1151, 1205
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 4 cut(s) 655, 766, 784, 907
SfcI CTRYAG 1 cut(s) 1307
SinI GGWCC 1 cut(s) 1211
SmiMI CAYNNNNRTG 1 cut(s) 1126
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
SsiI CCGC 4 cut(s) 126, 242, 376, 920
SspMI CTAG 1 cut(s) 1274
StyD4I CCNGG 7 cut(s) 221, 317, 690, 835, 975, 1149, 1203
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 5 cut(s) 177, 427, 504, 569, 882
TaiI ACGT 1 cut(s) 421
TaqI TCGA 3 cut(s) 87, 339, 1231
TaqII GACCGA 1 cut(s) 735
TatI WGTACW 3 cut(s) 504, 569, 1366
TauI GCSGC 1 cut(s) 923
TfiI GAWTC 5 cut(s) 260, 535, 590, 679, 1252
Tru1I TTAA 5 cut(s) 360, 485, 516, 1145, 1196
Tru9I TTAA 5 cut(s) 360, 485, 516, 1145, 1196
TscAI CASTG 2 cut(s) 589, 885
TseFI GTSAC 4 cut(s) 498, 578, 1041, 1199
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 4 cut(s) 498, 578, 1041, 1199
TspDTI ATGAA 4 cut(s) 548, 603, 875, 1080
TspRI CASTG 2 cut(s) 589, 885
Van91I CCANNNNNTGG 1 cut(s) 675
VpaK11BI GGWCC 1 cut(s) 1211
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 3 cut(s) 867, 1017, 1154
XmnI GAANNNNTTC 3 cut(s) 683, 1021, 1224
XspI CTAG 1 cut(s) 1274
Zsp2I ATGCAT 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.