Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002112

Physical Location & Seq

Genomic Coordinates Reverse (-)

10726743 .. 10728058

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGACGTGGAAGTGTTTATTATGCACTAATCAAAATCTTGAATCTAGGCAGTCACAAATCACCACGAGAAAATTTGGTGATTTCAGTTATTGCAATCGGCCTGCTGACGGCAATGTTGATGCACCGCTGAAGCGATATGAAATTTCCGAGGAAGATCACCCTTTAAGCCTTCGTAAGGCTAGTCATACAGAGATTGTAGAACAGATAGACCGTGATTTGAAACGAACACACCCGGATCTGAAATTCTTCTCGTGGGATTTATCATTCAGTGGGAAACACAGGAAGCATTCTTCTGCTACTTGCAAATTAAATGCAGCAATCCGCTATGTGCAAGGCATGAATGAGGTCTTGGCGCCAATATACCATGTCCTTAGTACTGACACGAATGAGCAAAATGCGGTAAGAGAATTTGTAAAAAGAAGCAAAGCTGCAGGATGGTTTCGTTCTGCAGGTAAATGCAGAAGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

157

Amino Acids

18.02

Weight (kDa)

9.42

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	44 - 126	9.1e-08	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04830 AT1G04830 AT1G04830 AT4G13730 AT4G13730 AT4G13730
fragaria_vesca	FvH4_1g03180 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770
malus_domestica	MD02G1030800.v1.1 MD04G1012300.v1.1 MD13G1283700.v1.1
prunus_persica	Prupe.1G158400_v2.0.a1 Prupe.7G243700_v2.0.a1 Prupe.7G243700_v2.0.a1
pyrus_communis	pycom02g02570 pycom04g00970 pycom04g00980 pycom15g15410 pycom420g01230
rosa_chinensis	RchiOBHm_Chr2g0088311 RchiOBHm_Chr4g0414611
rosa_laevigata	RLG00000008143 RLG00000015941
rosa_multiflora	Rmu_sc0004235.1_g000035 Rmu_sc0007034.1_g000031 Rmu_sc0012211.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358370
rosa_rugosa	Rorug01G0482800 Rorug04G0128100 Rorug04G0128200
rosa_samantha	Rh2AG037900 Rh2BG037100 Rh2CG038200 Rh2DG037600 Rh4AG186900 Rh4BG185600 Rh4CG199000 Rh4DG185100
rosa_wichuraiana	Rw2G002990 Rw4G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	3 cut(s)	125, 322, 398
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	4 cut(s)	71, 141, 242, 407
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	2 cut(s)	107, 175
AgsI	TTSAA	2 cut(s)	41, 220
AjiI	CACGTC	1 cut(s)	6
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	314, 428
ApoI	RAATTY	4 cut(s)	71, 141, 242, 407
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	52, 89, 149
BanI	GGYRCC	1 cut(s)	352
BauI	CACGAG	2 cut(s)	64, 250
BbvI	GCAGC	2 cut(s)	326, 415
BccI	CCATC	1 cut(s)	429
BceAI	ACGGC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	2 cut(s)	45, 180
BfmI	CTRYAG	2 cut(s)	429, 447
BfoI	RGCGCY	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	315, 429
BlsI	GCNGC	2 cut(s)	316, 430
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 175
Bse3DI	GCAATG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	2 cut(s)	107, 175
BseMI	GCAATG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	326, 415
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	107, 175
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	154, 235
BspACI	CCGC	3 cut(s)	125, 322, 398
BspANI	GGCC	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	2 cut(s)	433, 451
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	154, 235
BssNI	GRCGYC	1 cut(s)	353
BssSI	CACGAG	2 cut(s)	64, 250
Bst2BI	CACGAG	2 cut(s)	64, 250
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	371
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	440
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	2 cut(s)	157, 238
BstMBI	GATC	2 cut(s)	154, 235
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	2 cut(s)	429, 447
BstV1I	GCAGC	2 cut(s)	326, 415
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	2 cut(s)	337, 365
CviJI	RGCY	4 cut(s)	100, 168, 179, 428
CviKI_1	RGCY	4 cut(s)	100, 168, 179, 428
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	1 cut(s)	371
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	2 cut(s)	156, 237
DpnII	GATC	2 cut(s)	154, 235
Eco57I	CTGAAG	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
FaeI	CATG	2 cut(s)	340, 368
FaiI	YATR	7 cut(s)	22, 138, 186, 327, 338, 361, 366
FatI	CATG	2 cut(s)	336, 364
Fnu4HI	GCNGC	2 cut(s)	315, 429
FokI	GGATG	1 cut(s)	447
Fsp4HI	GCNGC	2 cut(s)	315, 429
FspBI	CTAG	2 cut(s)	45, 180
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	2 cut(s)	315, 429
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	340, 368
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	3 cut(s)	52, 89, 149
Hpy188I	TCNGA	2 cut(s)	148, 240
Hpy188III	TCNNGA	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	9 cut(s)	24, 93, 122, 303, 314, 331, 431, 449, 459
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	340, 368
HspAI	GCGC	1 cut(s)	353
KasI	GGCGCC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	154, 235
LpnPI	CCDG	5 cut(s)	114, 246, 265, 417, 435
Lsp1109I	GCAGC	2 cut(s)	326, 415
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	45, 180
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	2 cut(s)	156, 237
MboI	GATC	2 cut(s)	154, 235
MboII	GAAGA	3 cut(s)	164, 238, 282
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	5 cut(s)	71, 141, 242, 305, 407
Mly113I	GGCGCC	1 cut(s)	353
MnlI	CCTC	2 cut(s)	142, 337
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	2 cut(s)	164, 308
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	286
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	154, 235
NlaIII	CATG	2 cut(s)	340, 368
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	316, 430
PluTI	GGCGCC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	354
PstI	CTGCAG	2 cut(s)	433, 451
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	164, 308
SatI	GCNGC	2 cut(s)	315, 429
Sau3AI	GATC	2 cut(s)	154, 235
ScaI	AGTACT	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	4 cut(s)	8, 348, 430, 454
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	2 cut(s)	429, 447
SfoI	GGCGCC	1 cut(s)	354
Sse9I	AATT	5 cut(s)	71, 141, 242, 305, 407
SsiI	CCGC	3 cut(s)	125, 322, 398
SspDI	GGCGCC	1 cut(s)	352
SspMI	CTAG	2 cut(s)	45, 180
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	8
TasI	AATT	5 cut(s)	71, 141, 242, 305, 407
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	164, 308
Tru9I	TTAA	2 cut(s)	164, 308
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	2 cut(s)	314, 428
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	2 cut(s)	153, 353
TspRI	CASTG	1 cut(s)	274
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	4 cut(s)	71, 141, 242, 407
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	2 cut(s)	45, 180
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.