AT4G13730

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
7970177 .. 7974271
4095 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13730.2

Sequence Viewer

Length: 1350 bp
ATGGCCAAGAAAGGTATCCCAGAGTGGCTCAACAGTTCTCTCTGGTCCTCCTCTCCTCCCATCGACGATCGCCACCTCCGCAATCCTGCCGCCACTTCCATCACCCCTCCATCTCCTCCGATCGTCGAGCGTCCTCCTTTTTCTTCCTCTCCCTCCGCGATTTCCACCGCACCAGCTCCTCCTCTTCCTGTTCGTCCTCCTTCCAAATCTGAGATTAACGATTTGCAGAATGGGAGTGGTAACGATGGTGCTGGAATTGAAACTCCCGCAGTTTCTTCTGTTGAAGATGTTTCTCGAAAAGCGCAGGTCGTGGCTGAGTTATCGAAGAAGGTGATAGACTTGAAGGAATTGAGGAAGATAGCTTCACAAGGTCTACCTGATGATGCTGGAATTCGATCCATTGTTTGGAAGCTTTTGTTGGATTATTTGTCACCGGATCGCTCTCTGTGGTCTTCTGAGTTAGCTAAGAAAAGGTCTCAGTACAAGCAATTCAAAGAGGAGCTTCTGATGAACCCTTCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAATGATCCAAAAATCGAAAGCCCTGGTGCCCTTTCAAGGTCAGAGATTACTCATGAGGATCATCCCTTAAGTCTTGGAACAACAAGCTTATGGAATAATTTTTTCAAGGACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGGATGCTTTGAAGAACATTTTGACTATTTTCGCAAAGTTGAATCCTGGCATCAGATATGTACAAGGGATGAATGAGATATTGGCACCTATTTTCTACATCTTCAAAAATGACCCGGATAAAGGAAATGCAGCATACGCTGAATCAGATGCATTTTTCTGTTTTGTTGAATTGATGAGTGGGTTTCGAGATAATTTCTGTCAACAACTAGATAACAGTGTTGTGGGTATACGTTACACTATAACAAGACTGTCGTTGCTCTTGAAGCATCATGATGAAGAACTTTGGCGTCATTTAGAAGTCACAACCAAAATAAACCCGCAATTCTATGCATTCAGATGGATCACACTCCTATTGACTCAAGAATTCAATTTCGTGGAAAGCCTTCACATCTGGGACACACTCTTAAGCGACCCGGAAGGTCCTCAGGAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTTCGAAGGCGTTTGCTTGCTGGAGATTTTACGTCGAACCTCAAACTTCTTCAGAACTATCCTCCTACAAACATCAGTCACATGCTCTATGTGGCAGACAAATTACGCACTAAATAA

Protein Analysis

449

Amino Acids

50.57

Weight (kDa)

6.24

Isoelectric Point (pI)

56.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 225 - 405 4.6e-35 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 256 - 403 2.1e-06 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 2 cut(s) 587, 850
AccB7I CCANNNNNTGG 1 cut(s) 405
AccI GTMKAC 2 cut(s) 373, 994
AccII CGCG 2 cut(s) 158, 699
AciI CCGC 8 cut(s) 79, 90, 156, 168, 267, 552, 1085, 1207
AclWI GGATC 5 cut(s) 390, 444, 560, 627, 1115
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 390, 1130
AcuI CTGAAG 2 cut(s) 501, 1268
AcyI GRCGYC 1 cut(s) 1054
AfaI GTAC 3 cut(s) 482, 712, 828
AfiI CCNNNNNNNGG 3 cut(s) 405, 597, 887
AflII CTTAAG 2 cut(s) 628, 1171
AjnI CCWGG 2 cut(s) 583, 811
AjuI GAANNNNNNNTTGG 4 cut(s) 401, 433, 830, 862
AluBI AGCT 6 cut(s) 176, 362, 412, 464, 502, 648
AluI AGCT 6 cut(s) 176, 362, 412, 464, 502, 648
Alw26I GTCTC 1 cut(s) 480
AlwI GGATC 5 cut(s) 390, 444, 560, 627, 1115
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 896
ApoI RAATTY 2 cut(s) 390, 1130
Asp700I GAANNNNTTC 1 cut(s) 1149
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 45, 1187
AsuC2I CCSGG 2 cut(s) 881, 1181
AsuHPI GGTGA 4 cut(s) 94, 343, 423, 566
AsuII TTCGAA 1 cut(s) 1237
AvaII GGWCC 2 cut(s) 45, 1187
AxyI CCTNAGG 1 cut(s) 1191
BaeGI GKGCMC 1 cut(s) 592
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 587, 850
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 908
BccI CCATC 5 cut(s) 68, 107, 118, 239, 1098
BciT130I CCWGG 2 cut(s) 585, 813
BciVI GTATCC 1 cut(s) 26
BcnI CCSGG 2 cut(s) 881, 1181
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 2 cut(s) 974, 1232
BfrI CTTAAG 2 cut(s) 628, 1171
BfuAI ACCTGC 1 cut(s) 295
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 2 cut(s) 90, 897
BlsI GCNGC 2 cut(s) 91, 898
Bme1390I CCNGG 4 cut(s) 585, 813, 881, 1181
Bme18I GGWCC 2 cut(s) 45, 1187
BmgT120I GGNCC 2 cut(s) 45, 1187
BmiI GGNNCC 2 cut(s) 589, 852
BmrFI CCNGG 4 cut(s) 585, 813, 881, 1181
BmsI GCATC 6 cut(s) 373, 696, 760, 825, 904, 1042
BpiI GAAGAC 1 cut(s) 444
BpmI CTGGAG 1 cut(s) 1275
Bpu14I TTCGAA 1 cut(s) 1237
BpuEI CTTGAG 1 cut(s) 1110
BpuMI CCSGG 2 cut(s) 881, 1181
BsaHI GRCGYC 1 cut(s) 1054
BsaI GGTCTC 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 583
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 3 cut(s) 405, 597, 887
Bse21I CCTNAGG 1 cut(s) 1191
Bse3DI GCAATG 1 cut(s) 1227
BseBI CCWGG 2 cut(s) 585, 813
BseDI CCNNGG 1 cut(s) 583
BseGI GGATG 4 cut(s) 622, 715, 775, 840
BseLI CCNNNNNNNGG 3 cut(s) 405, 597, 887
BseMI GCAATG 1 cut(s) 1227
BseMII CTCAG 5 cut(s) 201, 306, 447, 491, 1205
BseRI GAGGAG 6 cut(s) 40, 45, 105, 168, 171, 512
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 1 cut(s) 908
Bsh1236I CGCG 2 cut(s) 158, 699
Bsh1285I CGRYCG 2 cut(s) 70, 123
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 587, 850
BsiEI CGRYCG 2 cut(s) 70, 123
BsiSI CCGG 3 cut(s) 434, 881, 1181
BslFI GGGAC 1 cut(s) 1175
BslI CCNNNNNNNGG 3 cut(s) 405, 597, 887
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 1175
BsmI GAATGC 1 cut(s) 1097
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 480
Bsp119I TTCGAA 1 cut(s) 1237
Bsp1286I GDGCHC 1 cut(s) 592
Bsp1407I TGTACA 1 cut(s) 826
Bsp143I GATC 7 cut(s) 67, 120, 395, 436, 565, 619, 1107
BspACI CCGC 8 cut(s) 79, 90, 156, 168, 267, 552, 1085, 1207
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 5 cut(s) 202, 307, 448, 490, 1204
BspFNI CGCG 2 cut(s) 158, 699
BspHI TCATGA 2 cut(s) 613, 1036
BspLI GGNNCC 2 cut(s) 589, 852
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 5 cut(s) 390, 444, 560, 627, 1115
BspT104I TTCGAA 1 cut(s) 1237
BspT107I GGYRCC 2 cut(s) 587, 850
BspTI CTTAAG 2 cut(s) 628, 1171
BspTNI GGTCTC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 1227
BsrGI TGTACA 1 cut(s) 826
BssECI CCNNGG 1 cut(s) 583
BssMI GATC 7 cut(s) 67, 120, 395, 436, 565, 619, 1107
BssNAI GTATAC 1 cut(s) 995
BssNI GRCGYC 1 cut(s) 1054
Bst1107I GTATAC 1 cut(s) 995
Bst2UI CCWGG 2 cut(s) 585, 813
Bst4CI ACNGT 3 cut(s) 35, 983, 1017
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 1054
BstAFI CTTAAG 2 cut(s) 628, 1171
BstAUI TGTACA 1 cut(s) 826
BstBI TTCGAA 1 cut(s) 1237
BstC8I GCNNGC 1 cut(s) 1251
BstDEI CTNAG 6 cut(s) 210, 315, 456, 465, 477, 1191
BstF5I GGATG 4 cut(s) 622, 715, 775, 840
BstFNI CGCG 2 cut(s) 158, 699
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 7 cut(s) 70, 123, 398, 439, 568, 622, 1110
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 7 cut(s) 67, 120, 395, 436, 565, 619, 1107
BstMCI CGRYCG 2 cut(s) 70, 123
BstMWI GCNNNNNNNGC 3 cut(s) 78, 902, 1030
BstNI CCWGG 2 cut(s) 585, 813
BstNSI RCATGY 1 cut(s) 1318
BstSCI CCNGG 4 cut(s) 583, 811, 879, 1179
BstSLI GKGCMC 1 cut(s) 592
BstUI CGCG 2 cut(s) 158, 699
BstV1I GCAGC 1 cut(s) 908
BstV2I GAAGAC 1 cut(s) 444
BstZ17I GTATAC 1 cut(s) 995
Bsu36I CCTNAGG 1 cut(s) 1191
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 714
BtsCI GGATG 4 cut(s) 622, 715, 775, 840
BtsIMutI CAGTG 1 cut(s) 988
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 1251
CciI TCATGA 2 cut(s) 613, 1036
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 45, 1187
CseI GACGC 2 cut(s) 119, 1043
Csp6I GTAC 3 cut(s) 481, 711, 827
CviAII CATG 3 cut(s) 614, 1037, 1315
CviQI GTAC 3 cut(s) 481, 711, 827
DdeI CTNAG 6 cut(s) 210, 315, 456, 465, 477, 1191
DpnI GATC 7 cut(s) 69, 122, 397, 438, 567, 621, 1109
DpnII GATC 7 cut(s) 67, 120, 395, 436, 565, 619, 1107
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 45, 1187
Eco57I CTGAAG 2 cut(s) 501, 1268
Eco81I CCTNAGG 1 cut(s) 1191
EcoO109I RGGNCCY 1 cut(s) 1187
EcoRI GAATTC 2 cut(s) 390, 1130
EcoRII CCWGG 2 cut(s) 583, 811
EcoT22I ATGCAT 2 cut(s) 919, 1099
FaeI CATG 3 cut(s) 617, 1040, 1318
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 1175
FatI CATG 3 cut(s) 613, 1036, 1314
FauI CCCGC 2 cut(s) 274, 1092
FblI GTMKAC 2 cut(s) 373, 994
Fnu4HI GCNGC 2 cut(s) 90, 897
FokI GGATG 4 cut(s) 609, 702, 782, 847
Fsp4HI GCNGC 2 cut(s) 90, 897
FspBI CTAG 2 cut(s) 974, 1232
GlaI GCGC 1 cut(s) 303
GluI GCNGC 2 cut(s) 90, 897
GsuI CTGGAG 1 cut(s) 1275
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 434, 881, 1181
HgaI GACGC 2 cut(s) 119, 1043
HhaI GCGC 1 cut(s) 304
Hin1I GRCGYC 1 cut(s) 1054
Hin1II CATG 3 cut(s) 617, 1040, 1318
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 1 cut(s) 968
HindII GTYRAC 1 cut(s) 968
HindIII AAGCTT 2 cut(s) 410, 646
HinfI GANTC 4 cut(s) 743, 808, 908, 1123
HpaII CCGG 3 cut(s) 434, 881, 1181
HphI GGTGA 4 cut(s) 94, 343, 423, 566
Hpy166II GTNNAC 3 cut(s) 374, 968, 995
Hpy188III TCNNGA 9 cut(s) 294, 614, 719, 767, 953, 1027, 1037, 1127, 1193
Hpy8I GTNNAC 3 cut(s) 374, 968, 995
Hpy99I CGWCG 3 cut(s) 68, 128, 1270
HpyAV CCTTC 7 cut(s) 210, 322, 337, 525, 1160, 1178, 1233
HpyCH4III ACNGT 3 cut(s) 35, 983, 1017
HpyCH4IV ACGT 2 cut(s) 997, 1265
HpyCH4V TGCA 7 cut(s) 226, 727, 755, 896, 917, 1097, 1220
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 902, 1030
HpyF3I CTNAG 6 cut(s) 210, 315, 456, 465, 477, 1191
HpySE526I ACGT 2 cut(s) 997, 1265
Hsp92I GRCGYC 1 cut(s) 1054
Hsp92II CATG 3 cut(s) 617, 1040, 1318
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 7 cut(s) 67, 120, 395, 436, 565, 619, 1107
LmnI GCTCC 2 cut(s) 181, 499
Lsp1109I GCAGC 1 cut(s) 908
LweI GCATC 6 cut(s) 373, 696, 760, 825, 904, 1042
MaeI CTAG 2 cut(s) 974, 1232
MaeII ACGT 2 cut(s) 997, 1265
MaeIII GTNAC 6 cut(s) 239, 429, 523, 998, 1066, 1310
MalI GATC 7 cut(s) 69, 122, 397, 438, 567, 621, 1109
MboI GATC 7 cut(s) 67, 120, 395, 436, 565, 619, 1107
MhlI GDGCHC 1 cut(s) 592
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1117
MmeI TCCRAC 1 cut(s) 399
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 919, 1099
MroXI GAANNNNTTC 1 cut(s) 1149
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 216, 629, 1172, 1226
MslI CAYNNNNRTG 2 cut(s) 1038, 1102
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 2 cut(s) 628, 1171
MspI CCGG 3 cut(s) 434, 881, 1181
MspR9I CCNGG 4 cut(s) 585, 813, 881, 1181
Mva1269I GAATGC 1 cut(s) 1097
MvaI CCWGG 2 cut(s) 585, 813
MvnI CGCG 2 cut(s) 158, 699
MwoI GCNNNNNNNGC 3 cut(s) 78, 902, 1030
NciI CCSGG 2 cut(s) 881, 1181
NdeII GATC 7 cut(s) 67, 120, 395, 436, 565, 619, 1107
NlaIII CATG 3 cut(s) 617, 1040, 1318
NlaIV GGNNCC 2 cut(s) 589, 852
NmuCI GTSAC 3 cut(s) 429, 1066, 1310
NsiI ATGCAT 2 cut(s) 919, 1099
NspI RCATGY 1 cut(s) 1318
NspV TTCGAA 1 cut(s) 1237
PagI TCATGA 2 cut(s) 613, 1036
PctI GAATGC 1 cut(s) 1097
PdmI GAANNNNTTC 1 cut(s) 1149
PfeI GAWTC 3 cut(s) 743, 808, 908
PflMI CCANNNNNTGG 1 cut(s) 405
PkrI GCNGC 2 cut(s) 91, 898
Ple19I CGATCG 2 cut(s) 70, 123
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
PpuMI RGGWCCY 1 cut(s) 1187
Psp5II RGGWCCY 1 cut(s) 1187
Psp6I CCWGG 2 cut(s) 583, 811
PspGI CCWGG 2 cut(s) 583, 811
PspN4I GGNNCC 2 cut(s) 589, 852
PspPI GGNCC 2 cut(s) 45, 1187
PspPPI RGGWCCY 1 cut(s) 1187
PvuI CGATCG 2 cut(s) 70, 123
RsaI GTAC 3 cut(s) 482, 712, 828
RsaNI GTAC 3 cut(s) 481, 711, 827
RseI CAYNNNNRTG 2 cut(s) 1038, 1102
SaqAI TTAA 4 cut(s) 216, 629, 1172, 1226
SatI GCNGC 2 cut(s) 90, 897
Sau3AI GATC 7 cut(s) 67, 120, 395, 436, 565, 619, 1107
Sau96I GGNCC 2 cut(s) 45, 1187
SchI GAGTC 1 cut(s) 1117
ScrFI CCNGG 4 cut(s) 585, 813, 881, 1181
SduI GDGCHC 1 cut(s) 592
SfaNI GCATC 6 cut(s) 373, 696, 760, 825, 904, 1042
SfuI TTCGAA 1 cut(s) 1237
SinI GGWCC 2 cut(s) 45, 1187
SmiMI CAYNNNNRTG 2 cut(s) 1038, 1102
SmlI CTYRAG 3 cut(s) 628, 1125, 1171
SmoI CTYRAG 3 cut(s) 628, 1125, 1171
SsiI CCGC 8 cut(s) 79, 90, 156, 168, 267, 552, 1085, 1207
SspMI CTAG 2 cut(s) 974, 1232
StyD4I CCNGG 4 cut(s) 583, 811, 879, 1179
TaaI ACNGT 3 cut(s) 35, 983, 1017
TaiI ACGT 2 cut(s) 1000, 1268
TaqI TCGA 9 cut(s) 63, 126, 295, 323, 394, 576, 952, 1237, 1268
TatI WGTACW 2 cut(s) 480, 826
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 3 cut(s) 743, 808, 908
Tru1I TTAA 4 cut(s) 216, 629, 1172, 1226
Tru9I TTAA 4 cut(s) 216, 629, 1172, 1226
TscAI CASTG 1 cut(s) 988
TseFI GTSAC 3 cut(s) 429, 1066, 1310
TseI GCWGC 1 cut(s) 896
Tsp45I GTSAC 3 cut(s) 429, 1066, 1310
TspDTI ATGAA 3 cut(s) 524, 851, 1056
TspRI CASTG 1 cut(s) 988
Van91I CCANNNNNTGG 1 cut(s) 405
Vha464I CTTAAG 2 cut(s) 628, 1171
VpaK11BI GGWCC 2 cut(s) 45, 1187
XapI RAATTY 2 cut(s) 390, 1130
XceI RCATGY 1 cut(s) 1318
XmiI GTMKAC 2 cut(s) 373, 994
XmnI GAANNNNTTC 1 cut(s) 1149
XspI CTAG 2 cut(s) 974, 1232
Zsp2I ATGCAT 2 cut(s) 919, 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.