FvH4_4g13770

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
17286763 .. 17292930
6168 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13770.t2

Sequence Viewer

Length: 1350 bp
ATGCACAACCAAATGGTGAAGAAGCGAGTCCCGGAATGGCTCAACAGCTCCCTCTGGTCTTCCCCTCCCTCTGCTCCTCCCGCCGACGACGATCGAGCTCAACGCTACACCTCCAAGCCCTCCACCCCCACCACCACCACTACCTCCGCGTCCGTCGTCGAGCCTCCGCTTCCTGTCCCGCCTCCCTCCTCCGCCAGAGAGCAGCCTCCGCCGGAGCCTCAGCCTGTCGATTCAGTCTCCGATCACGACGACAGGGGTGCCGCCGTTCCTTCCCCCGAGGACTTCTCTCGTCAGTCGCAGCTCTTGGCTGAGCTATCAAAGAAGATTATAAATGTTCGTGAGTTGCGGAAAATTGCGGTACAGGGTATACCTGATGGTGCTGGGATTCGGTCCACGGTGTGGAAGCTATTACTAGGATATTTACCACCGGATCGGGCGCTTTGGCCATCTGAGGTAGCAAAAAAGAGGTCACAGTATAAGCATTTCAAAGACGAGCTCTTGATGAATCCCTCAGAGATCACACGGAAGTTAGAGGATAACGGCACAAGTTGTGATAGTGAAGAATCAAAAAGCAAGGGCTTGTTATCAAGATCACATATAGCTCATGGTGAGCATCCATTGAGTCTTGGGAAGTCCAGCATTTGGAATCAGTTTTTCCAGGACACGGAGATTATAGAACAGATTGACCGAGATGTAAAGCGCACTCATCCAGACATGCACTTTTTCTCAGGGGACTCTCAATTTGCTAAATCTAATCAGGATGCTTTGAAGAACATCCTGGTTGTATTTGCAAAGCTAAATCCCGGCATAAGATATGTTCAAGGGATGAATGAACTTTTGGCACCACTGTACTATGTCTTCAAAAATGATCCTGATGAGGAATATGCGGCCGCAGCTGAAGCAGACACATTCTTTTGTTTTGTTGAATTATTGAGTGGCTTCCGCGATCATTTCTGTCAGCAACTTGACAATAGTGTTGTGGGTATCCGTTCCACGATAACAAGATTGTCACAACTTTTGAAGGAACATGATGAAGAGCTATGGCGTCATCTTGAGATCACAACCAAAGTCAACCCCCAATTTTATGCGTTTCGGTGGATCACTCTCCTCTTGACCCAGGAGTTCAATTTTGCAGACAGCCTTCACATTTGGGACACACTTCTAAGTGATTCTGAAGGTCCTCAGGAAACCCTTCTCCGAGTATGTTGTGCCATGCTGATTCTTGTTCGGAGGCGCTTATTAGCTGGCGATTTCACCTCTAATCTTAAACTACTACAGCACTATCCTCCTACAAACATCAGCCATCTGCTCTATGTTGCGAACAAGTTGCGTGTACAATCGTCAGGCTAG

Protein Analysis

450

Amino Acids

50.87

Weight (kDa)

6.08

Isoelectric Point (pI)

60.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 190 - 382 2.9e-39 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 222 - 395 4.3e-09 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AccB1I GGYRCC 2 cut(s) 257, 841
AccB7I CCANNNNNTGG 2 cut(s) 399, 642
AccI GTMKAC 1 cut(s) 367
AccII CGCG 2 cut(s) 149, 945
AclWI GGATC 3 cut(s) 438, 863, 1106
AcoI YGGCCR 2 cut(s) 443, 888
AcuI CTGAAG 2 cut(s) 918, 1194
AcyI GRCGYC 1 cut(s) 1045
AdeI CACNNNGTG 1 cut(s) 399
AfaI GTAC 3 cut(s) 360, 851, 1335
AfiI CCNNNNNNNGG 3 cut(s) 399, 642, 664
AgsI TTSAA 7 cut(s) 487, 769, 821, 862, 926, 1021, 1126
AjnI CCWGG 3 cut(s) 657, 777, 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 821, 853
Alw21I GWGCWC 2 cut(s) 100, 498
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 3 cut(s) 438, 863, 1106
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 2 cut(s) 443, 888
ApeKI GCWGC 3 cut(s) 202, 298, 893
ArsI GACNNNNNNTTYG 4 cut(s) 452, 484, 725, 757
Asp700I GAANNNNTTC 1 cut(s) 1191
AspLEI GCGC 3 cut(s) 439, 702, 1236
AspS9I GGNCC 2 cut(s) 390, 1178
AsuC2I CCSGG 2 cut(s) 32, 804
AsuHPI GGTGA 3 cut(s) 28, 620, 1246
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 2 cut(s) 390, 1178
AxyI CCTNAGG 1 cut(s) 1182
BalI TGGCCA 1 cut(s) 445
BanI GGYRCC 2 cut(s) 257, 841
BanII GRGCYC 2 cut(s) 100, 498
BarI GAAGNNNNNNTAC 2 cut(s) 842, 874
BbsI GAAGAC 2 cut(s) 51, 850
Bbv12I GWGCWC 2 cut(s) 100, 498
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 3 cut(s) 214, 310, 905
BccI CCATC 3 cut(s) 368, 454, 1311
BceAI ACGGC 2 cut(s) 248, 556
BcgI CGANNNNNNTGC 4 cut(s) 239, 273, 1309, 1343
BciT130I CCWGG 3 cut(s) 659, 779, 1118
BciVI GTATCC 1 cut(s) 995
BcnI CCSGG 2 cut(s) 32, 804
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 2 cut(s) 413, 1348
BfmI CTRYAG 1 cut(s) 1274
BfoI RGCGCY 2 cut(s) 440, 1237
BfuI GTATCC 1 cut(s) 995
BisI GCNGC 6 cut(s) 203, 261, 299, 888, 891, 894
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 6 cut(s) 204, 262, 300, 889, 892, 895
Bme1390I CCNGG 5 cut(s) 32, 659, 779, 804, 1118
Bme18I GGWCC 2 cut(s) 390, 1178
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 390, 1178
BmiI GGNNCC 3 cut(s) 216, 259, 843
BmrFI CCNGG 5 cut(s) 32, 659, 779, 804, 1118
BmsI GCATC 2 cut(s) 622, 751
BpiI GAAGAC 2 cut(s) 51, 850
BplI GAGNNNNNCTC 2 cut(s) 269, 301
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 1073
BpuMI CCSGG 2 cut(s) 32, 804
BsaHI GRCGYC 1 cut(s) 1045
BsaJI CCNNGG 3 cut(s) 276, 393, 1116
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 642, 664
Bse21I CCTNAGG 1 cut(s) 1182
BseBI CCWGG 3 cut(s) 659, 779, 1118
BseDI CCNNGG 3 cut(s) 276, 393, 1116
BseGI GGATG 5 cut(s) 613, 706, 766, 774, 831
BseLI CCNNNNNNNGG 3 cut(s) 399, 642, 664
BseMII CTCAG 6 cut(s) 233, 300, 441, 525, 741, 1196
BseRI GAGGAG 3 cut(s) 66, 178, 1097
BseX3I CGGCCG 1 cut(s) 888
BseXI GCAGC 3 cut(s) 214, 310, 905
BseYI CCCAGC 1 cut(s) 380
Bsh1236I CGCG 2 cut(s) 149, 945
Bsh1285I CGRYCG 2 cut(s) 94, 891
BshFI GGCC 2 cut(s) 445, 890
BshNI GGYRCC 2 cut(s) 257, 841
BsiEI CGRYCG 2 cut(s) 94, 891
BsiHKAI GWGCWC 2 cut(s) 100, 498
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 4 cut(s) 32, 212, 428, 804
BslFI GGGAC 4 cut(s) 14, 161, 746, 1166
BslI CCNNNNNNNGG 3 cut(s) 399, 642, 664
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 4 cut(s) 14, 161, 746, 1166
BsnI GGCC 2 cut(s) 445, 890
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 100, 498
Bsp1407I TGTACA 1 cut(s) 1333
Bsp143I GATC 9 cut(s) 91, 241, 430, 516, 590, 868, 946, 1056, 1098
Bsp1720I GCTNAGC 1 cut(s) 309
BspANI GGCC 2 cut(s) 445, 890
BspCNI CTCAG 6 cut(s) 232, 301, 442, 524, 740, 1195
BspFNI CGCG 2 cut(s) 149, 945
BspLI GGNNCC 3 cut(s) 216, 259, 843
BspPI GGATC 3 cut(s) 438, 863, 1106
BspQI GCTCTTC 1 cut(s) 1029
BspT107I GGYRCC 2 cut(s) 257, 841
BsrGI TGTACA 1 cut(s) 1333
BssECI CCNNGG 3 cut(s) 276, 393, 1116
BssMI GATC 9 cut(s) 91, 241, 430, 516, 590, 868, 946, 1056, 1098
BssNAI GTATAC 1 cut(s) 368
BssNI GRCGYC 1 cut(s) 1045
Bst1107I GTATAC 1 cut(s) 368
Bst2UI CCWGG 3 cut(s) 659, 779, 1118
Bst4CI ACNGT 3 cut(s) 397, 474, 849
Bst6I CTCTTC 1 cut(s) 1029
BstACI GRCGYC 1 cut(s) 1045
BstAUI TGTACA 1 cut(s) 1333
BstC8I GCNNGC 1 cut(s) 1246
BstDEI CTNAG 7 cut(s) 219, 309, 450, 511, 727, 1163, 1182
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 5 cut(s) 613, 706, 766, 774, 831
BstFNI CGCG 2 cut(s) 149, 945
BstH2I RGCGCY 2 cut(s) 440, 1237
BstHHI GCGC 3 cut(s) 439, 702, 1236
BstKTI GATC 9 cut(s) 94, 244, 433, 519, 593, 871, 949, 1059, 1101
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 9 cut(s) 91, 241, 430, 516, 590, 868, 946, 1056, 1098
BstMCI CGRYCG 2 cut(s) 94, 891
BstMWI GCNNNNNNNGC 4 cut(s) 80, 208, 893, 899
BstNI CCWGG 3 cut(s) 659, 779, 1118
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 5 cut(s) 30, 657, 777, 802, 1116
BstSFI CTRYAG 1 cut(s) 1274
BstUI CGCG 2 cut(s) 149, 945
BstV1I GCAGC 3 cut(s) 214, 310, 905
BstV2I GAAGAC 2 cut(s) 51, 850
BstZ17I GTATAC 1 cut(s) 368
BstZI CGGCCG 1 cut(s) 888
Bsu36I CCTNAGG 1 cut(s) 1182
BsuI GTATCC 1 cut(s) 995
BsuRI GGCC 2 cut(s) 445, 890
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 5 cut(s) 613, 706, 766, 774, 831
BtsIMutI CAGTG 1 cut(s) 845
Cac8I GCNNGC 1 cut(s) 1246
CciNI GCGGCCGC 1 cut(s) 888
CfoI GCGC 3 cut(s) 439, 702, 1236
Cfr13I GGNCC 2 cut(s) 390, 1178
CseI GACGC 2 cut(s) 138, 1034
Csp6I GTAC 3 cut(s) 359, 850, 1334
CviAII CATG 4 cut(s) 605, 715, 1028, 1213
CviQI GTAC 3 cut(s) 359, 850, 1334
DdeI CTNAG 7 cut(s) 219, 309, 450, 511, 727, 1163, 1182
DpnI GATC 9 cut(s) 93, 243, 432, 518, 592, 870, 948, 1058, 1100
DpnII GATC 9 cut(s) 91, 241, 430, 516, 590, 868, 946, 1056, 1098
DraIII CACNNNGTG 1 cut(s) 399
EaeI YGGCCR 2 cut(s) 443, 888
EagI CGGCCG 1 cut(s) 888
Eam1104I CTCTTC 1 cut(s) 1029
EarI CTCTTC 1 cut(s) 1029
EciI GGCGGA 2 cut(s) 181, 198
Ecl136II GAGCTC 2 cut(s) 98, 496
EclXI CGGCCG 1 cut(s) 888
Eco24I GRGCYC 2 cut(s) 100, 498
Eco47I GGWCC 2 cut(s) 390, 1178
Eco52I CGGCCG 1 cut(s) 888
Eco53kI GAGCTC 2 cut(s) 98, 496
Eco57I CTGAAG 2 cut(s) 918, 1194
Eco81I CCTNAGG 1 cut(s) 1182
Eco88I CYCGRG 1 cut(s) 275
EcoICRI GAGCTC 2 cut(s) 98, 496
EcoO109I RGGNCCY 1 cut(s) 1178
EcoRII CCWGG 3 cut(s) 657, 777, 1116
EcoT38I GRGCYC 2 cut(s) 100, 498
FaeI CATG 4 cut(s) 608, 718, 1031, 1216
FaqI GGGAC 4 cut(s) 14, 161, 746, 1166
FatI CATG 4 cut(s) 604, 714, 1027, 1212
FauI CCCGC 2 cut(s) 88, 186
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 6 cut(s) 203, 261, 299, 888, 891, 894
FokI GGATG 5 cut(s) 600, 693, 761, 773, 838
FriOI GRGCYC 2 cut(s) 100, 498
Fsp4HI GCNGC 6 cut(s) 203, 261, 299, 888, 891, 894
FspBI CTAG 2 cut(s) 413, 1348
GlaI GCGC 3 cut(s) 438, 701, 1235
GluI GCNGC 6 cut(s) 203, 261, 299, 888, 891, 894
GsaI CCCAGC 1 cut(s) 384
HaeII RGCGCY 2 cut(s) 440, 1237
HaeIII GGCC 2 cut(s) 445, 890
HapII CCGG 4 cut(s) 32, 212, 428, 804
HgaI GACGC 2 cut(s) 138, 1034
HhaI GCGC 3 cut(s) 439, 702, 1236
Hin1I GRCGYC 1 cut(s) 1045
Hin1II CATG 4 cut(s) 608, 718, 1031, 1216
Hin6I GCGC 3 cut(s) 437, 700, 1234
HinP1I GCGC 3 cut(s) 437, 700, 1234
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HpaII CCGG 4 cut(s) 32, 212, 428, 804
HphI GGTGA 3 cut(s) 28, 620, 1246
Hpy166II GTNNAC 4 cut(s) 368, 393, 1072, 1334
Hpy188I TCNGA 6 cut(s) 241, 451, 514, 1174, 1199, 1230
Hpy8I GTNNAC 4 cut(s) 368, 393, 1072, 1334
Hpy99I CGWCG 5 cut(s) 89, 92, 158, 161, 251
HpyAV CCTTC 5 cut(s) 279, 1015, 1151, 1169, 1202
HpyCH4III ACNGT 3 cut(s) 397, 474, 849
HpyCH4V TGCA 4 cut(s) 4, 718, 791, 1133
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 208, 893, 899
HpyF3I CTNAG 7 cut(s) 219, 309, 450, 511, 727, 1163, 1182
Hsp92I GRCGYC 1 cut(s) 1045
Hsp92II CATG 4 cut(s) 608, 718, 1031, 1216
HspAI GCGC 3 cut(s) 437, 700, 1234
Kzo9I GATC 9 cut(s) 91, 241, 430, 516, 590, 868, 946, 1056, 1098
LguI GCTCTTC 1 cut(s) 1029
LmnI GCTCC 3 cut(s) 53, 79, 214
Lsp1109I GCAGC 3 cut(s) 214, 310, 905
LweI GCATC 2 cut(s) 622, 751
MaeI CTAG 2 cut(s) 413, 1348
MaeIII GTNAC 2 cut(s) 468, 1008
MalI GATC 9 cut(s) 93, 243, 432, 518, 592, 870, 948, 1058, 1100
MboI GATC 9 cut(s) 91, 241, 430, 516, 590, 868, 946, 1056, 1098
MboII GAAGA 7 cut(s) 31, 51, 334, 572, 781, 850, 1046
MhlI GDGCHC 2 cut(s) 100, 498
MlsI TGGCCA 1 cut(s) 445
MluCI AATT 5 cut(s) 351, 740, 926, 1079, 1126
MluNI TGGCCA 1 cut(s) 445
MlyI GAGTC 3 cut(s) 36, 631, 728
Mox20I TGGCCA 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 1191
MscI TGGCCA 1 cut(s) 445
MseI TTAA 1 cut(s) 1266
Msp20I TGGCCA 1 cut(s) 445
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 4 cut(s) 32, 212, 428, 804
MspR9I CCNGG 5 cut(s) 32, 659, 779, 804, 1118
MvaI CCWGG 3 cut(s) 659, 779, 1118
MvnI CGCG 2 cut(s) 149, 945
MwoI GCNNNNNNNGC 4 cut(s) 80, 208, 893, 899
NciI CCSGG 2 cut(s) 32, 804
NdeII GATC 9 cut(s) 91, 241, 430, 516, 590, 868, 946, 1056, 1098
NlaIII CATG 4 cut(s) 608, 718, 1031, 1216
NlaIV GGNNCC 3 cut(s) 216, 259, 843
NmuCI GTSAC 2 cut(s) 468, 1008
NotI GCGGCCGC 1 cut(s) 888
NspI RCATGY 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 1029
PdmI GAANNNNTTC 1 cut(s) 1191
PfeI GAWTC 7 cut(s) 230, 385, 505, 563, 646, 1169, 1219
PflMI CCANNNNNTGG 2 cut(s) 399, 642
PfoI TCCNGGA 2 cut(s) 30, 657
PkrI GCNGC 6 cut(s) 204, 262, 300, 889, 892, 895
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 3 cut(s) 35, 630, 728
PpsI GAGTC 3 cut(s) 35, 630, 728
PpuMI RGGWCCY 1 cut(s) 1178
PsiI TTATAA 1 cut(s) 329
Psp124BI GAGCTC 2 cut(s) 100, 498
Psp5II RGGWCCY 1 cut(s) 1178
Psp6I CCWGG 3 cut(s) 657, 777, 1116
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 3 cut(s) 657, 777, 1116
PspN4I GGNNCC 3 cut(s) 216, 259, 843
PspPI GGNCC 2 cut(s) 390, 1178
PspPPI RGGWCCY 1 cut(s) 1178
PvuI CGATCG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 3 cut(s) 360, 851, 1335
RsaNI GTAC 3 cut(s) 359, 850, 1334
SacI GAGCTC 2 cut(s) 100, 498
SapI GCTCTTC 1 cut(s) 1029
SaqAI TTAA 1 cut(s) 1266
SatI GCNGC 6 cut(s) 203, 261, 299, 888, 891, 894
Sau3AI GATC 9 cut(s) 91, 241, 430, 516, 590, 868, 946, 1056, 1098
Sau96I GGNCC 2 cut(s) 390, 1178
SchI GAGTC 3 cut(s) 36, 631, 728
ScrFI CCNGG 5 cut(s) 32, 659, 779, 804, 1118
SduI GDGCHC 2 cut(s) 100, 498
SfaNI GCATC 2 cut(s) 622, 751
SfcI CTRYAG 1 cut(s) 1274
SinI GGWCC 2 cut(s) 390, 1178
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
Sse9I AATT 5 cut(s) 351, 740, 926, 1079, 1126
SspMI CTAG 2 cut(s) 413, 1348
SstI GAGCTC 2 cut(s) 100, 498
StyD4I CCNGG 5 cut(s) 30, 657, 777, 802, 1116
TaaI ACNGT 3 cut(s) 397, 474, 849
TaqI TCGA 3 cut(s) 94, 159, 228
TaqII GACCGA 2 cut(s) 378, 702
TasI AATT 5 cut(s) 351, 740, 926, 1079, 1126
TatI WGTACW 2 cut(s) 849, 1333
TauI GCSGC 3 cut(s) 263, 890, 893
TfiI GAWTC 7 cut(s) 230, 385, 505, 563, 646, 1169, 1219
Tru1I TTAA 1 cut(s) 1266
Tru9I TTAA 1 cut(s) 1266
TscAI CASTG 1 cut(s) 852
TseFI GTSAC 2 cut(s) 468, 1008
TseI GCWGC 3 cut(s) 202, 298, 893
Tsp45I GTSAC 2 cut(s) 468, 1008
TspDTI ATGAA 4 cut(s) 518, 842, 846, 1047
TspGWI ACGGA 4 cut(s) 142, 538, 680, 977
TspRI CASTG 1 cut(s) 852
Van91I CCANNNNNTGG 2 cut(s) 399, 642
VpaK11BI GGWCC 2 cut(s) 390, 1178
XceI RCATGY 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 1191
XspI CTAG 2 cut(s) 413, 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.