Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002112

Physical Location & Seq

Genomic Coordinates Reverse (-)

42368518 .. 42374885

Gene Structure 6368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG199000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTATAACCAAATGGTAAAGAAGCGAGTCCCGGAATGGCTCAACAGCTCGCTCTGGTCTTCTCCTCCCTCTGCTCCTCCCATCGACGACGATCGAACTCAACGCTACACCTCCAAGCCTTCCACCGCCACAACCACTAGCTCCGACTCCGTCGTCGAGCCTCCGCTTCCCGTGCCGCCTCCCTCGTCCGTCAGAGCAGAGCCTCCGCCCGAGCCTCAACCCGCCGATTCAATCTCCGATCACGAAGACAAGGCCGCCGCCTCCCCTTCCCCCGAGGAATTCTCTCGCCAGTCTCAGCTCCTGGCCGAGCTATCAAAGAAGACTATAAATGTGCGTGAGTTGCGGAAAATTGCGTCTCAGGGTATTCCAGATGGTGCTGGTGTGCGTTCCACGGTCTGGAAGCTATTACTTGGATATTTACCACCGGATCGGGCGCTTTGGCCATTGGAGTTGGCTAAAAAGAGGTCACAGTATAAGCATTTTAAAGACGAGCTCTTGATGAATCCTTCAGAAATCACACGGAAGTTAGAGGATAATGGCACAAGTTGTGATAGTGAAGAATCAAAAAGCAAGGGCTTGTTATCAAGATCACATATAGCTCATGGGGAGCATCCATTGAGTCTTGGAAAGTCCAGCATTTGGAATCAGTTCTTCCAGGACACAGAGATTATAGAACAGATTGACCGAGATGTAAAGCGCACTCATCCAGATATGCACTTTTTCTCAGGGGACTCTCAATTTGCTAAATCTAATCAGGATGCTTTGAAGAACATCCTGGTTGTATTTGCAAAGCTAAATCCCGGTATAAGATATGTTCAAGGGATGAATGAACTTTTGGCGCCACTGTACTATGTCTTCAAAAATGATCCTGATGAGGAATATGCGGTAAGGTTGCCATACATTCCTTTTATTTTTTTACTAAAACAAAATTTCACCCACAAGCTAGTCCCTAACTCCCTATCTATAGACTTGATATTTGTCTTTGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

330

Amino Acids

37.26

Weight (kDa)

6.27

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	220 - 289	9.1e-15	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04830 AT1G04830 AT1G04830 AT4G13730 AT4G13730 AT4G13730
fragaria_vesca	FvH4_1g03180 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770
malus_domestica	MD02G1030800.v1.1 MD04G1012300.v1.1 MD13G1283700.v1.1
prunus_persica	Prupe.1G158400_v2.0.a1 Prupe.7G243700_v2.0.a1 Prupe.7G243700_v2.0.a1
pyrus_communis	pycom02g02570 pycom04g00970 pycom04g00980 pycom15g15410 pycom420g01230
rosa_chinensis	RchiOBHm_Chr2g0088311 RchiOBHm_Chr4g0414611
rosa_laevigata	RLG00000008143 RLG00000015941
rosa_multiflora	Rmu_sc0004235.1_g000035 Rmu_sc0007034.1_g000031 Rmu_sc0012211.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358370
rosa_rugosa	Rorug01G0482800 Rorug04G0128100 Rorug04G0128200
rosa_samantha	Rh2AG037900 Rh2BG037100 Rh2CG038200 Rh2DG037600 Rh4AG186900 Rh4BG185600 Rh4CG199000 Rh4DG185100
rosa_wichuraiana	Rw2G002990 Rw4G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	838
AccB7I	CCANNNNNTGG	2 cut(s)	396, 639
AciI	CCGC	9 cut(s)	126, 164, 176, 206, 222, 255, 258, 343, 884
AclWI	GGATC	2 cut(s)	435, 860
AcoI	YGGCCR	2 cut(s)	303, 440
AcsI	RAATTY	2 cut(s)	278, 928
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	839
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	2 cut(s)	396, 639
AgsI	TTSAA	4 cut(s)	231, 766, 818, 859
AjnI	CCWGG	3 cut(s)	300, 654, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	818, 850
AluBI	AGCT	9 cut(s)	48, 141, 298, 310, 403, 493, 599, 793, 943
AluI	AGCT	9 cut(s)	48, 141, 298, 310, 403, 493, 599, 793, 943
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	2 cut(s)	297, 360
AlwI	GGATC	2 cut(s)	435, 860
AlwNI	CAGNNNCTG	1 cut(s)	301
Ama87I	CYCGRG	2 cut(s)	209, 272
AoxI	GGCC	3 cut(s)	252, 303, 440
ApoI	RAATTY	2 cut(s)	278, 928
ArsI	GACNNNNNNTTYG	4 cut(s)	722, 754, 959, 991
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	3 cut(s)	436, 699, 841
AsuC2I	CCSGG	2 cut(s)	32, 801
AsuHPI	GGTGA	1 cut(s)	925
AvaI	CYCGRG	2 cut(s)	209, 272
BalI	TGGCCA	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	838
BanII	GRGCYC	1 cut(s)	495
BarI	GAAGNNNNNNTAC	2 cut(s)	839, 871
BbsI	GAAGAC	4 cut(s)	51, 252, 326, 847
Bbv12I	GWGCWC	1 cut(s)	495
BccI	CCATC	2 cut(s)	89, 365
BciT130I	CCWGG	3 cut(s)	302, 656, 776
BcnI	CCSGG	2 cut(s)	32, 801
BcoDI	GTCTC	2 cut(s)	297, 360
BfaI	CTAG	2 cut(s)	138, 944
BfmI	CTRYAG	1 cut(s)	963
BfoI	RGCGCY	2 cut(s)	437, 842
BisI	GCNGC	3 cut(s)	176, 255, 258
BlsI	GCNGC	3 cut(s)	177, 256, 259
Bme1390I	CCNGG	5 cut(s)	32, 302, 656, 776, 801
BmeT110I	CYCGRG	2 cut(s)	209, 272
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	5 cut(s)	32, 302, 656, 776, 801
BmsI	GCATC	2 cut(s)	619, 748
BpiI	GAAGAC	4 cut(s)	51, 252, 326, 847
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpuMI	CCSGG	2 cut(s)	32, 801
BsaHI	GRCGYC	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	273, 390
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 639
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	3 cut(s)	302, 656, 776
BseDI	CCNNGG	2 cut(s)	273, 390
BseGI	GGATG	5 cut(s)	610, 703, 763, 771, 828
BseLI	CCNNNNNNNGG	2 cut(s)	396, 639
BseMII	CTCAG	3 cut(s)	308, 371, 738
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	2 cut(s)	54, 66
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	254, 305, 442
BshNI	GGYRCC	1 cut(s)	838
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	2 cut(s)	209, 272
BsiSI	CCGG	3 cut(s)	32, 425, 801
BslFI	GGGAC	3 cut(s)	14, 743, 932
BslI	CCNNNNNNNGG	2 cut(s)	396, 639
BsmAI	GTCTC	2 cut(s)	297, 360
BsmBI	CGTCTC	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	14, 743, 932
BsnI	GGCC	3 cut(s)	254, 305, 442
BsoBI	CYCGRG	2 cut(s)	209, 272
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	5 cut(s)	91, 238, 427, 587, 865
BspACI	CCGC	9 cut(s)	126, 164, 176, 206, 222, 255, 258, 343, 884
BspANI	GGCC	3 cut(s)	254, 305, 442
BspCNI	CTCAG	3 cut(s)	307, 370, 737
BspLI	GGNNCC	1 cut(s)	840
BspPI	GGATC	2 cut(s)	435, 860
BspT107I	GGYRCC	1 cut(s)	838
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	273, 390
BssMI	GATC	5 cut(s)	91, 238, 427, 587, 865
BssNI	GRCGYC	1 cut(s)	839
Bst2UI	CCWGG	3 cut(s)	302, 656, 776
Bst4CI	ACNGT	3 cut(s)	394, 471, 846
BstACI	GRCGYC	1 cut(s)	839
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	294, 357, 724
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	5 cut(s)	610, 703, 763, 771, 828
BstH2I	RGCGCY	2 cut(s)	437, 842
BstHHI	GCGC	3 cut(s)	436, 699, 841
BstKTI	GATC	5 cut(s)	94, 241, 430, 590, 868
BstMAI	GTCTC	2 cut(s)	297, 360
BstMBI	GATC	5 cut(s)	91, 238, 427, 587, 865
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 340
BstNI	CCWGG	3 cut(s)	302, 656, 776
BstSCI	CCNGG	5 cut(s)	30, 300, 654, 774, 799
BstSFI	CTRYAG	1 cut(s)	963
BstV2I	GAAGAC	4 cut(s)	51, 252, 326, 847
BsuRI	GGCC	3 cut(s)	254, 305, 442
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	5 cut(s)	610, 703, 763, 771, 828
BtsIMutI	CAGTG	1 cut(s)	842
Cac8I	GCNNGC	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	301
CfoI	GCGC	3 cut(s)	436, 699, 841
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	847
CviAII	CATG	1 cut(s)	602
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	3 cut(s)	294, 357, 724
DinI	GGCGCC	1 cut(s)	840
DpnI	GATC	5 cut(s)	93, 240, 429, 589, 867
DpnII	GATC	5 cut(s)	91, 238, 427, 587, 865
DraI	TTTAAA	1 cut(s)	484
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	2 cut(s)	303, 440
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	495
Eco53kI	GAGCTC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	209, 272
EcoICRI	GAGCTC	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	3 cut(s)	300, 654, 774
EcoT38I	GRGCYC	1 cut(s)	495
EgeI	GGCGCC	1 cut(s)	840
EheI	GGCGCC	1 cut(s)	840
Esp3I	CGTCTC	1 cut(s)	360
FaeI	CATG	1 cut(s)	605
FaqI	GGGAC	3 cut(s)	14, 743, 932
FatI	CATG	1 cut(s)	601
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	176, 255, 258
FokI	GGATG	5 cut(s)	597, 690, 758, 770, 835
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	3 cut(s)	176, 255, 258
FspBI	CTAG	2 cut(s)	138, 944
GlaI	GCGC	3 cut(s)	435, 698, 840
GluI	GCNGC	3 cut(s)	176, 255, 258
HaeII	RGCGCY	2 cut(s)	437, 842
HaeIII	GGCC	3 cut(s)	254, 305, 442
HapII	CCGG	3 cut(s)	32, 425, 801
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	3 cut(s)	436, 699, 841
Hin1I	GRCGYC	1 cut(s)	839
Hin1II	CATG	1 cut(s)	605
Hin6I	GCGC	3 cut(s)	434, 697, 839
HinP1I	GCGC	3 cut(s)	434, 697, 839
HinfI	GANTC	8 cut(s)	27, 146, 227, 502, 560, 619, 643, 731
HpaII	CCGG	3 cut(s)	32, 425, 801
HphI	GGTGA	1 cut(s)	925
Hpy188I	TCNGA	4 cut(s)	145, 194, 238, 511
Hpy188III	TCNNGA	8 cut(s)	242, 368, 397, 496, 585, 707, 755, 869
Hpy99I	CGWCG	4 cut(s)	89, 92, 155, 158
HpyAV	CCTTC	3 cut(s)	129, 276, 516
HpyCH4III	ACNGT	3 cut(s)	394, 471, 846
HpyCH4V	TGCA	3 cut(s)	715, 788, 986
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 340
HpyF3I	CTNAG	3 cut(s)	294, 357, 724
Hsp92I	GRCGYC	1 cut(s)	839
Hsp92II	CATG	1 cut(s)	605
HspAI	GCGC	3 cut(s)	434, 697, 839
KasI	GGCGCC	1 cut(s)	838
Kzo9I	GATC	5 cut(s)	91, 238, 427, 587, 865
LmnI	GCTCC	4 cut(s)	79, 146, 303, 607
LweI	GCATC	2 cut(s)	619, 748
MaeI	CTAG	2 cut(s)	138, 944
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	5 cut(s)	93, 240, 429, 589, 867
MboI	GATC	5 cut(s)	91, 238, 427, 587, 865
MboII	GAAGA	7 cut(s)	51, 257, 331, 569, 643, 778, 847
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	4 cut(s)	278, 348, 737, 928
MluNI	TGGCCA	1 cut(s)	442
Mly113I	GGCGCC	1 cut(s)	839
MlyI	GAGTC	4 cut(s)	36, 140, 628, 725
MmeI	TCCRAC	1 cut(s)	168
Mox20I	TGGCCA	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	442
MspI	CCGG	3 cut(s)	32, 425, 801
MspR9I	CCNGG	5 cut(s)	32, 302, 656, 776, 801
MvaI	CCWGG	3 cut(s)	302, 656, 776
MwoI	GCNNNNNNNGC	2 cut(s)	172, 340
NarI	GGCGCC	1 cut(s)	839
NciI	CCSGG	2 cut(s)	32, 801
NdeII	GATC	5 cut(s)	91, 238, 427, 587, 865
NlaIII	CATG	1 cut(s)	605
NlaIV	GGNNCC	1 cut(s)	840
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	4 cut(s)	227, 502, 560, 643
PflFI	GACNNNGTC	1 cut(s)	149
PflMI	CCANNNNNTGG	2 cut(s)	396, 639
PfoI	TCCNGGA	2 cut(s)	30, 654
PkrI	GCNGC	3 cut(s)	177, 256, 259
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	4 cut(s)	35, 140, 627, 725
PluTI	GGCGCC	1 cut(s)	842
PpsI	GAGTC	4 cut(s)	35, 140, 627, 725
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	3 cut(s)	300, 654, 774
PspGI	CCWGG	3 cut(s)	300, 654, 774
PspN4I	GGNNCC	1 cut(s)	840
PstNI	CAGNNNCTG	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	3 cut(s)	176, 255, 258
Sau3AI	GATC	5 cut(s)	91, 238, 427, 587, 865
SchI	GAGTC	4 cut(s)	36, 140, 628, 725
ScrFI	CCNGG	5 cut(s)	32, 302, 656, 776, 801
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	2 cut(s)	619, 748
SfcI	CTRYAG	1 cut(s)	963
SfoI	GGCGCC	1 cut(s)	840
Sse9I	AATT	4 cut(s)	278, 348, 737, 928
SsiI	CCGC	9 cut(s)	126, 164, 176, 206, 222, 255, 258, 343, 884
SspDI	GGCGCC	1 cut(s)	838
SspMI	CTAG	2 cut(s)	138, 944
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	5 cut(s)	30, 300, 654, 774, 799
TaaI	ACNGT	3 cut(s)	394, 471, 846
TaqI	TCGA	3 cut(s)	84, 94, 156
TaqII	GACCGA	1 cut(s)	699
TasI	AATT	4 cut(s)	278, 348, 737, 928
TatI	WGTACW	1 cut(s)	846
TauI	GCSGC	3 cut(s)	178, 257, 260
TfiI	GAWTC	4 cut(s)	227, 502, 560, 643
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	849
TseFI	GTSAC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	3 cut(s)	515, 839, 843
TspGWI	ACGGA	3 cut(s)	139, 178, 535
TspRI	CASTG	1 cut(s)	849
Tth111I	GACNNNGTC	1 cut(s)	149
Van91I	CCANNNNNTGG	2 cut(s)	396, 639
XapI	RAATTY	2 cut(s)	278, 928
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	138, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.