Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002112

Physical Location & Seq

Genomic Coordinates Reverse (-)

20403526 .. 20407292

Gene Structure 3767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0128100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCGTCCACATGTTTGCTACCACCTATCAATGGAGGCCACCTTCTCTTCTCTCTCAATCACCATCGCCTCTCTGCAACTCCCACTCCCTACAAGTGGGGATGGAGAAGATACCAGGCTGGAAACATAGTTGCTTACAGAACCAATGGCCACGCCCTTCAAATGTTGCCCAATCCTAATGCGTCTCAAAAGAAAGGAAATAATGAGGTGATCATGGTTGATCCTTTGGAAGCCAAGCGATTGGCTGCCAAACAAATGGAAGAAATTAAAGCAAAGGAGAACTTCAGGAGAAAACGACAAATAGAAGCAATTAATGGCGCATGGGCGATGATTGGTCTGACAGCAGGCTTGGTTATTGAAGGTCAAACTGGAAAAAGCATTCTTGTTCAGCTGGCTGACTACTGGAGTGCTATTGTCGACTTTTTCATGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

144

Amino Acids

16.15

Weight (kDa)

9.81

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04830 AT1G04830 AT1G04830 AT4G13730 AT4G13730 AT4G13730
fragaria_vesca	FvH4_1g03180 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770
malus_domestica	MD02G1030800.v1.1 MD04G1012300.v1.1 MD13G1283700.v1.1
prunus_persica	Prupe.1G158400_v2.0.a1 Prupe.7G243700_v2.0.a1 Prupe.7G243700_v2.0.a1
pyrus_communis	pycom02g02570 pycom04g00970 pycom04g00980 pycom15g15410 pycom420g01230
rosa_chinensis	RchiOBHm_Chr2g0088311 RchiOBHm_Chr4g0414611
rosa_laevigata	RLG00000008143 RLG00000015941
rosa_multiflora	Rmu_sc0004235.1_g000035 Rmu_sc0007034.1_g000031 Rmu_sc0012211.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358370
rosa_rugosa	Rorug01G0482800 Rorug04G0128100 Rorug04G0128200
rosa_samantha	Rh2AG037900 Rh2BG037100 Rh2CG038200 Rh2DG037600 Rh4AG186900 Rh4BG185600 Rh4CG199000 Rh4DG185100
rosa_wichuraiana	Rw2G002990 Rw4G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	417
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	32, 96
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	161, 359
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	37, 148
ApeKI	GCWGC	1 cut(s)	245
AseI	ATTAAT	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	53, 220
BalI	TGGCCA	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	2 cut(s)	72, 96
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	431
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 96
Bse1I	ACTGG	2 cut(s)	373, 407
BseBI	CCWGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	32, 96
BseNI	ACTGG	2 cut(s)	373, 407
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	2 cut(s)	39, 150
BslI	CCNNNNNNNGG	2 cut(s)	32, 96
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	39, 150
Bsp143I	GATC	2 cut(s)	210, 220
BspANI	GGCC	2 cut(s)	39, 150
BspPI	GGATC	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	373, 407
BssMI	GATC	2 cut(s)	210, 220
Bst2UI	CCWGG	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	346, 393
BstF5I	GGATG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	2 cut(s)	213, 223
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	2 cut(s)	210, 220
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	232
BstXI	CCANNNNNNTGG	2 cut(s)	241, 256
BsuRI	GGCC	2 cut(s)	39, 150
BtgZI	GCGATG	2 cut(s)	50, 341
BtsCI	GGATG	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	346, 393
CfoI	GCGC	1 cut(s)	320
CseI	GACGC	1 cut(s)	171
CviAII	CATG	4 cut(s)	12, 214, 321, 427
CviJI	RGCY	8 cut(s)	39, 119, 150, 233, 245, 348, 391, 395
CviKI_1	RGCY	8 cut(s)	39, 119, 150, 233, 245, 348, 391, 395
DpnI	GATC	2 cut(s)	212, 222
DpnII	GATC	2 cut(s)	210, 220
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	4 cut(s)	15, 217, 324, 430
FaiI	YATR	6 cut(s)	13, 128, 215, 322, 428, 433
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	4 cut(s)	11, 213, 320, 426
FbaI	TGATCA	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	246
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	39, 150
HgaI	GACGC	1 cut(s)	171
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	15, 217, 324, 430
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HphI	GGTGA	2 cut(s)	53, 220
Hpy166II	GTNNAC	2 cut(s)	9, 418
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	9, 418
HpyAV	CCTTC	3 cut(s)	53, 167, 353
HpyCH4V	TGCA	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	15, 217, 324, 430
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	210, 220
LpnPI	CCDG	8 cut(s)	101, 105, 128, 271, 330, 354, 377, 388
Lsp1109I	GCAGC	1 cut(s)	232
MalI	GATC	2 cut(s)	212, 222
MboI	GATC	2 cut(s)	210, 220
MboII	GAAGA	3 cut(s)	40, 120, 272
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	2 cut(s)	264, 309
MluNI	TGGCCA	1 cut(s)	150
MnlI	CCTC	3 cut(s)	29, 80, 199
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	2 cut(s)	267, 312
Msp20I	TGGCCA	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	116
NdeII	GATC	2 cut(s)	210, 220
NlaIII	CATG	4 cut(s)	15, 217, 324, 430
NspI	RCATGY	1 cut(s)	15
PciI	ACATGT	1 cut(s)	11
PctI	GAATGC	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	247
PscI	ACATGT	1 cut(s)	11
PshBI	ATTAAT	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PvuII	CAGCTG	1 cut(s)	391
SalI	GTCGAC	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	267, 312
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	210, 220
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	5 cut(s)	28, 45, 210, 364, 393
SfcI	CTRYAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	264, 309
StyD4I	CCNGG	1 cut(s)	114
TaqI	TCGA	1 cut(s)	417
TasI	AATT	2 cut(s)	264, 309
Tru1I	TTAA	2 cut(s)	267, 312
Tru9I	TTAA	2 cut(s)	267, 312
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	312
XceI	RCATGY	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.