Rw4G015960

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
36685681 .. 36691871
6191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015960.1

Sequence Viewer

Length: 1173 bp
ATGTATAACCAAATGGTAAAGAAGCGAGTCCCGGAATGGCTCAACAGCTCGCTCTGGGCTTCTCCTCCCTCTGCTCCTCCCATCGACGACGATCGAACTCAACGCTACACCTCCAAGCCTTCCACCGCCACAACCACTAGCTCCGACTCCGTCGTCGAGCCTCCGCTTCCCGTGCCGCCTCCCTCCTCCGTCAGAGCAGAGCCTCCGCCCGAGCCTCAACCCGCCGATTCAATCTCCGATCACGAAGACAAGGCCGCCGCCTCCCCTTCCCCCGAGGAATTCTCTCGCCAGTCTCAGCTGCTGGCCGAGCTATCAAAGAAGACTATAAATGTGCGTGAGTTGCGGAAAATTGCGTCGCAGGGTATTCCAGATGGTGCTGGTGTGCGTTCCACGGTCTGGAAGCTATTACTTGGATATTTACCACCGGATCGGGCGCTTTGGCCATCGGAGTTGGCTAAAAAGAGGTCACAGTATAAGCATTTTAAAGACGAGCTCTTGATGAATCCTTCAGAAATCACACGGAAGTTAGAGGATAATGGCACAAGTTGTGATAGTGAAGAATCAAAAAGCAAGGGCTTGTTATCAAGATCACATATAGCTCATGGGGAGCATCCATTGAGTCTTGGAAAGTCCAGCATTTGGAATCAGTTCTTCCAGGACACGGAGATTATAGAACAGATTGACCGAGATGTAAAGCGCACTCATCCAGATATGCACTTTTTCTCAGGGGACTCTCAATTTGCTAAATCTAATCAGGATGCTTTGAAGAACATCCTGGTTATATTTGCAAAGCTAAATCCCGGTATAAGATATGTTCAAGGGATGAATGAACTTTTGGCGCCACTGTACTATGTCTTCAAAAATGATCCTGATGAGGAATATGCGGCCGCAGCTGAAGCAGACACATTCTTTTGTTTTGTTGAATTATTGAGTGGCTTCCGCGATCATTTCTGTCAGCAACTTGATAATAGTGTTGTGGGAATACGCTCCACAATAACAAGATTGTCACAACTTTTAAAGGAACATGATGAAGAGCTATGGCGTCATCTTGAGATCACAACCAAAGTAAACATCTTTCTATTTTCTAGTCTGTCTGCCTGTCCTTTTTTTTTTCTCTCTTTCAGCAAGTGGATCCTATTTAAAGTCATCACCCTTTGTGTAGTGGAAGCATAA

Protein Analysis

390

Amino Acids

44.09

Weight (kDa)

5.76

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 220 - 363 6.8e-25 Rab-GTPase-TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 838
AccB7I CCANNNNNTGG 2 cut(s) 396, 639
AccII CGCG 1 cut(s) 942
AclWI GGATC 4 cut(s) 435, 860, 1126, 1139
AcoI YGGCCR 3 cut(s) 303, 440, 885
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 2 cut(s) 492, 915
AcyI GRCGYC 2 cut(s) 839, 1042
AfaI GTAC 1 cut(s) 848
AfiI CCNNNNNNNGG 3 cut(s) 396, 639, 661
AgsI TTSAA 5 cut(s) 231, 766, 818, 859, 923
AjnI CCWGG 2 cut(s) 654, 774
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 4 cut(s) 435, 860, 1126, 1139
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 2 cut(s) 209, 272
AoxI GGCC 4 cut(s) 252, 303, 440, 885
ApeKI GCWGC 2 cut(s) 298, 890
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 722, 754
Asp700I GAANNNNTTC 1 cut(s) 647
AspLEI GCGC 3 cut(s) 436, 699, 841
AsuC2I CCSGG 2 cut(s) 32, 801
AsuHPI GGTGA 1 cut(s) 1141
AvaI CYCGRG 2 cut(s) 209, 272
BalI TGGCCA 1 cut(s) 442
BamHI GGATCC 1 cut(s) 1131
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 1 cut(s) 495
BarI GAAGNNNNNNTAC 2 cut(s) 839, 871
BbsI GAAGAC 3 cut(s) 252, 326, 847
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 2 cut(s) 285, 902
BccI CCATC 3 cut(s) 89, 365, 451
BciT130I CCWGG 2 cut(s) 656, 776
BcnI CCSGG 2 cut(s) 32, 801
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 2 cut(s) 138, 1086
BfoI RGCGCY 2 cut(s) 437, 842
BisI GCNGC 7 cut(s) 176, 255, 258, 299, 885, 888, 891
BlsI GCNGC 7 cut(s) 177, 256, 259, 300, 886, 889, 892
Bme1390I CCNGG 4 cut(s) 32, 656, 776, 801
BmeT110I CYCGRG 2 cut(s) 209, 272
BmiI GGNNCC 2 cut(s) 840, 1133
BmrFI CCNGG 4 cut(s) 32, 656, 776, 801
BmsI GCATC 2 cut(s) 619, 748
BpiI GAAGAC 3 cut(s) 252, 326, 847
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BpuEI CTTGAG 1 cut(s) 1070
BpuMI CCSGG 2 cut(s) 32, 801
BsaHI GRCGYC 2 cut(s) 839, 1042
BsaJI CCNNGG 2 cut(s) 273, 390
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 639, 661
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 2 cut(s) 656, 776
BseDI CCNNGG 2 cut(s) 273, 390
BseGI GGATG 5 cut(s) 610, 703, 763, 771, 828
BseLI CCNNNNNNNGG 3 cut(s) 396, 639, 661
BseMII CTCAG 2 cut(s) 308, 738
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 3 cut(s) 54, 66, 175
BseX3I CGGCCG 1 cut(s) 885
BseXI GCAGC 2 cut(s) 285, 902
Bsh1236I CGCG 1 cut(s) 942
Bsh1285I CGRYCG 2 cut(s) 94, 888
BshFI GGCC 4 cut(s) 254, 305, 442, 887
BshNI GGYRCC 1 cut(s) 838
BsiEI CGRYCG 2 cut(s) 94, 888
BsiHKAI GWGCWC 1 cut(s) 495
BsiHKCI CYCGRG 2 cut(s) 209, 272
BsiSI CCGG 3 cut(s) 32, 425, 801
BslFI GGGAC 2 cut(s) 14, 743
BslI CCNNNNNNNGG 3 cut(s) 396, 639, 661
BsmAI GTCTC 1 cut(s) 297
BsmFI GGGAC 2 cut(s) 14, 743
BsnI GGCC 4 cut(s) 254, 305, 442, 887
BsoBI CYCGRG 2 cut(s) 209, 272
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 8 cut(s) 91, 238, 427, 587, 865, 943, 1053, 1131
BspANI GGCC 4 cut(s) 254, 305, 442, 887
BspCNI CTCAG 2 cut(s) 307, 737
BspFNI CGCG 1 cut(s) 942
BspLI GGNNCC 2 cut(s) 840, 1133
BspPI GGATC 4 cut(s) 435, 860, 1126, 1139
BspQI GCTCTTC 1 cut(s) 1026
BspT107I GGYRCC 1 cut(s) 838
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 273, 390
BssMI GATC 8 cut(s) 91, 238, 427, 587, 865, 943, 1053, 1131
BssNI GRCGYC 2 cut(s) 839, 1042
Bst2UI CCWGG 2 cut(s) 656, 776
Bst4CI ACNGT 3 cut(s) 394, 471, 846
Bst6I CTCTTC 1 cut(s) 1026
BstACI GRCGYC 2 cut(s) 839, 1042
BstC8I GCNNGC 2 cut(s) 50, 303
BstDEI CTNAG 2 cut(s) 294, 724
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 5 cut(s) 610, 703, 763, 771, 828
BstFNI CGCG 1 cut(s) 942
BstH2I RGCGCY 2 cut(s) 437, 842
BstHHI GCGC 3 cut(s) 436, 699, 841
BstKTI GATC 8 cut(s) 94, 241, 430, 590, 868, 946, 1056, 1134
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 8 cut(s) 91, 238, 427, 587, 865, 943, 1053, 1131
BstMCI CGRYCG 2 cut(s) 94, 888
BstMWI GCNNNNNNNGC 5 cut(s) 172, 307, 340, 890, 896
BstNI CCWGG 2 cut(s) 656, 776
BstSCI CCNGG 4 cut(s) 30, 654, 774, 799
BstUI CGCG 1 cut(s) 942
BstV1I GCAGC 2 cut(s) 285, 902
BstV2I GAAGAC 3 cut(s) 252, 326, 847
BstX2I RGATCY 1 cut(s) 1131
BstYI RGATCY 1 cut(s) 1131
BstZI CGGCCG 1 cut(s) 885
BsuRI GGCC 4 cut(s) 254, 305, 442, 887
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 5 cut(s) 610, 703, 763, 771, 828
BtsIMutI CAGTG 1 cut(s) 842
Cac8I GCNNGC 2 cut(s) 50, 303
CaiI CAGNNNCTG 1 cut(s) 301
CciNI GCGGCCGC 1 cut(s) 885
CfoI GCGC 3 cut(s) 436, 699, 841
CseI GACGC 2 cut(s) 342, 1031
Csp6I GTAC 1 cut(s) 847
CviAII CATG 2 cut(s) 602, 1025
CviQI GTAC 1 cut(s) 847
DdeI CTNAG 2 cut(s) 294, 724
DinI GGCGCC 1 cut(s) 840
DpnI GATC 8 cut(s) 93, 240, 429, 589, 867, 945, 1055, 1133
DpnII GATC 8 cut(s) 91, 238, 427, 587, 865, 943, 1053, 1131
DraI TTTAAA 3 cut(s) 484, 1017, 1141
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 3 cut(s) 303, 440, 885
EagI CGGCCG 1 cut(s) 885
Eam1104I CTCTTC 1 cut(s) 1026
EarI CTCTTC 1 cut(s) 1026
EciI GGCGGA 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 493
EclXI CGGCCG 1 cut(s) 885
Eco24I GRGCYC 1 cut(s) 495
Eco52I CGGCCG 1 cut(s) 885
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 2 cut(s) 492, 915
Eco88I CYCGRG 2 cut(s) 209, 272
EcoICRI GAGCTC 1 cut(s) 493
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 2 cut(s) 654, 774
EcoT38I GRGCYC 1 cut(s) 495
EgeI GGCGCC 1 cut(s) 840
EheI GGCGCC 1 cut(s) 840
FaeI CATG 2 cut(s) 605, 1028
FaqI GGGAC 2 cut(s) 14, 743
FatI CATG 2 cut(s) 601, 1024
FauI CCCGC 1 cut(s) 229
Fnu4HI GCNGC 7 cut(s) 176, 255, 258, 299, 885, 888, 891
FokI GGATG 5 cut(s) 597, 690, 758, 770, 835
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 7 cut(s) 176, 255, 258, 299, 885, 888, 891
FspBI CTAG 2 cut(s) 138, 1086
GlaI GCGC 3 cut(s) 435, 698, 840
GluI GCNGC 7 cut(s) 176, 255, 258, 299, 885, 888, 891
HaeII RGCGCY 2 cut(s) 437, 842
HaeIII GGCC 4 cut(s) 254, 305, 442, 887
HapII CCGG 3 cut(s) 32, 425, 801
HgaI GACGC 2 cut(s) 342, 1031
HhaI GCGC 3 cut(s) 436, 699, 841
Hin1I GRCGYC 2 cut(s) 839, 1042
Hin1II CATG 2 cut(s) 605, 1028
Hin6I GCGC 3 cut(s) 434, 697, 839
HinP1I GCGC 3 cut(s) 434, 697, 839
HinfI GANTC 8 cut(s) 27, 146, 227, 502, 560, 619, 643, 731
HpaII CCGG 3 cut(s) 32, 425, 801
HphI GGTGA 1 cut(s) 1141
Hpy166II GTNNAC 1 cut(s) 1069
Hpy188I TCNGA 5 cut(s) 145, 194, 238, 448, 511
Hpy188III TCNNGA 9 cut(s) 242, 368, 397, 496, 585, 707, 755, 869, 1049
Hpy8I GTNNAC 1 cut(s) 1069
Hpy99I CGWCG 5 cut(s) 89, 92, 155, 158, 358
HpyAV CCTTC 3 cut(s) 129, 276, 516
HpyCH4III ACNGT 3 cut(s) 394, 471, 846
HpyCH4V TGCA 2 cut(s) 715, 788
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 307, 340, 890, 896
HpyF3I CTNAG 2 cut(s) 294, 724
Hsp92I GRCGYC 2 cut(s) 839, 1042
Hsp92II CATG 2 cut(s) 605, 1028
HspAI GCGC 3 cut(s) 434, 697, 839
KasI GGCGCC 1 cut(s) 838
Kzo9I GATC 8 cut(s) 91, 238, 427, 587, 865, 943, 1053, 1131
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 4 cut(s) 79, 146, 607, 992
Lsp1109I GCAGC 2 cut(s) 285, 902
LweI GCATC 2 cut(s) 619, 748
MaeI CTAG 2 cut(s) 138, 1086
MaeIII GTNAC 2 cut(s) 465, 1005
MalI GATC 8 cut(s) 93, 240, 429, 589, 867, 945, 1055, 1133
MboI GATC 8 cut(s) 91, 238, 427, 587, 865, 943, 1053, 1131
MboII GAAGA 7 cut(s) 257, 331, 569, 643, 778, 847, 1043
MflI RGATCY 1 cut(s) 1131
MhlI GDGCHC 1 cut(s) 495
MlsI TGGCCA 1 cut(s) 442
MluCI AATT 4 cut(s) 278, 348, 737, 923
MluNI TGGCCA 1 cut(s) 442
Mly113I GGCGCC 1 cut(s) 839
MlyI GAGTC 4 cut(s) 36, 140, 628, 725
MmeI TCCRAC 1 cut(s) 168
Mox20I TGGCCA 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 647
MscI TGGCCA 1 cut(s) 442
MseI TTAA 3 cut(s) 483, 1016, 1140
Msp20I TGGCCA 1 cut(s) 442
MspA1I CMGCKG 2 cut(s) 298, 893
MspI CCGG 3 cut(s) 32, 425, 801
MspR9I CCNGG 4 cut(s) 32, 656, 776, 801
MvaI CCWGG 2 cut(s) 656, 776
MvnI CGCG 1 cut(s) 942
MwoI GCNNNNNNNGC 5 cut(s) 172, 307, 340, 890, 896
NarI GGCGCC 1 cut(s) 839
NciI CCSGG 2 cut(s) 32, 801
NdeII GATC 8 cut(s) 91, 238, 427, 587, 865, 943, 1053, 1131
NlaIII CATG 2 cut(s) 605, 1028
NlaIV GGNNCC 2 cut(s) 840, 1133
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 2 cut(s) 465, 1005
NotI GCGGCCGC 1 cut(s) 885
PciSI GCTCTTC 1 cut(s) 1026
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 4 cut(s) 227, 502, 560, 643
PflFI GACNNNGTC 1 cut(s) 149
PflMI CCANNNNNTGG 2 cut(s) 396, 639
PfoI TCCNGGA 2 cut(s) 30, 654
PkrI GCNGC 7 cut(s) 177, 256, 259, 300, 886, 889, 892
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 4 cut(s) 35, 140, 627, 725
PluTI GGCGCC 1 cut(s) 842
PpsI GAGTC 4 cut(s) 35, 140, 627, 725
Psp124BI GAGCTC 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 654, 774
PspGI CCWGG 2 cut(s) 654, 774
PspN4I GGNNCC 2 cut(s) 840, 1133
PstNI CAGNNNCTG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 1131
PsyI GACNNNGTC 1 cut(s) 149
PvuI CGATCG 1 cut(s) 94
PvuII CAGCTG 2 cut(s) 298, 893
RsaI GTAC 1 cut(s) 848
RsaNI GTAC 1 cut(s) 847
SacI GAGCTC 1 cut(s) 495
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 3 cut(s) 483, 1016, 1140
SatI GCNGC 7 cut(s) 176, 255, 258, 299, 885, 888, 891
Sau3AI GATC 8 cut(s) 91, 238, 427, 587, 865, 943, 1053, 1131
SchI GAGTC 4 cut(s) 36, 140, 628, 725
ScrFI CCNGG 4 cut(s) 32, 656, 776, 801
SduI GDGCHC 1 cut(s) 495
SfaNI GCATC 2 cut(s) 619, 748
SfoI GGCGCC 1 cut(s) 840
SmlI CTYRAG 1 cut(s) 1049
SmoI CTYRAG 1 cut(s) 1049
Sse9I AATT 4 cut(s) 278, 348, 737, 923
SspDI GGCGCC 1 cut(s) 838
SspMI CTAG 2 cut(s) 138, 1086
SstI GAGCTC 1 cut(s) 495
StyD4I CCNGG 4 cut(s) 30, 654, 774, 799
TaaI ACNGT 3 cut(s) 394, 471, 846
TaqI TCGA 3 cut(s) 84, 94, 156
TaqII GACCGA 1 cut(s) 699
TasI AATT 4 cut(s) 278, 348, 737, 923
TatI WGTACW 1 cut(s) 846
TauI GCSGC 5 cut(s) 178, 257, 260, 887, 890
TfiI GAWTC 4 cut(s) 227, 502, 560, 643
Tru1I TTAA 3 cut(s) 483, 1016, 1140
Tru9I TTAA 3 cut(s) 483, 1016, 1140
TscAI CASTG 1 cut(s) 849
TseFI GTSAC 2 cut(s) 465, 1005
TseI GCWGC 2 cut(s) 298, 890
Tsp45I GTSAC 2 cut(s) 465, 1005
TspDTI ATGAA 4 cut(s) 515, 839, 843, 1044
TspGWI ACGGA 4 cut(s) 139, 178, 535, 677
TspRI CASTG 1 cut(s) 849
Tth111I GACNNNGTC 1 cut(s) 149
Van91I CCANNNNNTGG 2 cut(s) 396, 639
XapI RAATTY 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 2 cut(s) 138, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.