Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0002112

Physical Location & Seq

Genomic Coordinates Reverse (-)

1715271 .. 1717451

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g01230.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTTCACTCACCTCAAATGGTGAAGAAGCGAGTCCCCGAATGGCTCAACAGCTCGCTCTGGTCCTCCTCCACGCCCTCCCCTTCCATCGACGATGATCTCGTCCAACGCTACACCTCCAATCCCACCGCCGCCACCGCCGCCGCCACCACTCCAATTTCTAGTTATTCTGTCTCCGACTCTGACCCGCCTTCCACGGTTGACCCCCCAATCCCGGTTGCCCCTCCCAAATCCACCAGAGAAGACAAGCATCTTCCCGAGCCCCAATTCTCAGATTCATTTCCGGATCACGAAGACAAGAGCAACAACACTGCTCCATCCCCCGAAGATATCTCCAGACAGTCTCAGCTCTTGGCCGAGCTGTCGAGGAAGGTGATTAATTTGCACGAATTGCGGAGAATTTCATCTCAGGGCATACCAGATGGTGCTGGGATACGGTCTACAGTTTGGAAGCTTTTACTCGGATATCTACCACCAGATCGGGGAGTTTGGTTGTCCGAGTTAGCTAAAAAGAGGTCACAGTACAAGCATTTTAAAGATGAGCTTTTGATGAATCCTTCAGAAATCACAAGGAAGATGGATAACTGCACTACTTGTGACAATGATGAATTAAAATGTCAAAGCAAGGGGTTGCTATCAAGATCTGAAATACCTCATGGGGAGCATCCATTGAGTCTTGGGAAGTCCAGTGTCTGGAATCAATTCTTCCAGGACACAGAGATCATAGAACAAATTGACCGAGATGTAAAGCGCACACATCCAGACATGCACTTCTTCTCAGGAGACTCTCAAGATGCTAAATCTAATCAGGTTTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

274

Amino Acids

30.68

Weight (kDa)

5.72

Isoelectric Point (pI)

61.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04830 AT1G04830 AT1G04830 AT4G13730 AT4G13730 AT4G13730
fragaria_vesca	FvH4_1g03180 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770
malus_domestica	MD02G1030800.v1.1 MD04G1012300.v1.1 MD13G1283700.v1.1
prunus_persica	Prupe.1G158400_v2.0.a1 Prupe.7G243700_v2.0.a1 Prupe.7G243700_v2.0.a1
pyrus_communis	pycom02g02570 pycom04g00970 pycom04g00980 pycom15g15410 pycom420g01230
rosa_chinensis	RchiOBHm_Chr2g0088311 RchiOBHm_Chr4g0414611
rosa_laevigata	RLG00000008143 RLG00000015941
rosa_multiflora	Rmu_sc0004235.1_g000035 Rmu_sc0007034.1_g000031 Rmu_sc0012211.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358370
rosa_rugosa	Rorug01G0482800 Rorug04G0128100 Rorug04G0128200
rosa_samantha	Rh2AG037900 Rh2BG037100 Rh2CG038200 Rh2DG037600 Rh4AG186900 Rh4BG185600 Rh4CG199000 Rh4DG185100
rosa_wichuraiana	Rw2G002990 Rw4G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	693
AccI	GTMKAC	1 cut(s)	440
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	7 cut(s)	129, 132, 138, 141, 144, 188, 394
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	399
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	3 cut(s)	214, 482, 693
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	6 cut(s)	54, 349, 361, 454, 506, 544
AluI	AGCT	6 cut(s)	54, 349, 361, 454, 506, 544
Alw26I	GTCTC	3 cut(s)	178, 348, 777
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	693
Ama87I	CYCGRG	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	399
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	753
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	3, 34, 385
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	264
BbsI	GAAGAC	2 cut(s)	249, 300
BccI	CCATC	4 cut(s)	95, 325, 416, 571
BciT130I	CCWGG	1 cut(s)	710
BciVI	GTATCC	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	3 cut(s)	178, 348, 777
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	426
BglII	AGATCT	1 cut(s)	641
BisI	GCNGC	3 cut(s)	132, 141, 144
BlsI	GCNGC	3 cut(s)	133, 142, 145
Bme1390I	CCNGG	2 cut(s)	215, 710
Bme18I	GGWCC	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	63
BmrFI	CCNGG	2 cut(s)	215, 710
BmsI	GCATC	3 cut(s)	259, 673, 784
BpiI	GAAGAC	2 cut(s)	249, 300
BpmI	CTGGAG	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 482, 693
Bse1I	ACTGG	1 cut(s)	687
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	3 cut(s)	317, 664, 757
BseLI	CCNNNNNNNGG	3 cut(s)	214, 482, 693
BseMII	CTCAG	4 cut(s)	285, 359, 422, 792
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	58
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	571
BshFI	GGCC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	215, 284
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	3 cut(s)	214, 482, 693
BsmAI	GTCTC	3 cut(s)	178, 348, 777
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	5 cut(s)	97, 286, 478, 641, 720
BspACI	CCGC	7 cut(s)	129, 132, 138, 141, 144, 188, 394
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	4 cut(s)	284, 358, 421, 791
BspEI	TCCGGA	1 cut(s)	283
BspPI	GGATC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	5 cut(s)	97, 286, 478, 641, 720
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	5 cut(s)	199, 342, 438, 445, 522
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	4 cut(s)	271, 345, 408, 778
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	317, 664, 757
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	5 cut(s)	100, 289, 481, 644, 723
BstMAI	GTCTC	3 cut(s)	178, 348, 777
BstMBI	GATC	5 cut(s)	97, 286, 478, 641, 720
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 140, 391
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	2 cut(s)	213, 708
BstSFI	CTRYAG	1 cut(s)	441
BstV2I	GAAGAC	2 cut(s)	249, 300
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	317, 664, 757
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	309, 694
Cac8I	GCNNGC	1 cut(s)	56
CaiI	CAGNNNCTG	1 cut(s)	693
CfoI	GCGC	1 cut(s)	753
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	2 cut(s)	656, 766
CviJI	RGCY	9 cut(s)	46, 54, 262, 349, 356, 361, 454, 506, 544
CviKI_1	RGCY	9 cut(s)	46, 54, 262, 349, 356, 361, 454, 506, 544
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	4 cut(s)	271, 345, 408, 778
DpnI	GATC	5 cut(s)	99, 288, 480, 643, 722
DpnII	GATC	5 cut(s)	97, 286, 478, 641, 720
DraI	TTTAAA	1 cut(s)	535
EaeI	YGGCCR	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	264
Eco32I	GATATC	2 cut(s)	331, 467
Eco47I	GGWCC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	708
EcoRV	GATATC	2 cut(s)	331, 467
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	2 cut(s)	659, 769
FaiI	YATR	4 cut(s)	416, 657, 725, 767
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	655, 765
FauI	CCCGC	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	3 cut(s)	132, 141, 144
FokI	GGATG	3 cut(s)	304, 651, 744
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	3 cut(s)	132, 141, 144
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	752
GluI	GCNGC	3 cut(s)	132, 141, 144
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	2 cut(s)	215, 284
HhaI	GCGC	1 cut(s)	753
Hin1II	CATG	2 cut(s)	659, 769
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	7 cut(s)	33, 179, 275, 553, 673, 697, 785
HpaII	CCGG	2 cut(s)	215, 284
HphI	GGTGA	3 cut(s)	3, 34, 385
Hpy166II	GTNNAC	2 cut(s)	202, 441
Hpy188I	TCNGA	7 cut(s)	178, 184, 274, 464, 499, 562, 646
Hpy188III	TCNNGA	9 cut(s)	257, 284, 290, 336, 639, 694, 761, 780, 791
Hpy8I	GTNNAC	2 cut(s)	202, 441
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	93, 201, 364, 567
HpyCH4III	ACNGT	5 cut(s)	199, 342, 438, 445, 522
HpyCH4V	TGCA	3 cut(s)	385, 588, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 140, 391
HpyF3I	CTNAG	4 cut(s)	271, 345, 408, 778
Hsp92II	CATG	2 cut(s)	659, 769
HspAI	GCGC	1 cut(s)	751
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	97, 286, 478, 641, 720
LmnI	GCTCC	2 cut(s)	319, 661
LweI	GCATC	3 cut(s)	259, 673, 784
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	516, 596
MalI	GATC	5 cut(s)	99, 288, 480, 643, 722
MboI	GATC	5 cut(s)	97, 286, 478, 641, 720
MboII	GAAGA	8 cut(s)	37, 245, 254, 305, 338, 586, 697, 766
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	8 cut(s)	156, 266, 379, 389, 399, 608, 701, 732
MlyI	GAGTC	4 cut(s)	42, 173, 682, 779
MmeI	TCCRAC	2 cut(s)	130, 201
MnlI	CCTC	9 cut(s)	24, 76, 79, 88, 127, 234, 360, 507, 663
MroI	TCCGGA	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	701
MseI	TTAA	3 cut(s)	378, 534, 611
MspI	CCGG	2 cut(s)	215, 284
MspR9I	CCNGG	2 cut(s)	215, 710
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	3 cut(s)	137, 140, 391
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	5 cut(s)	97, 286, 478, 641, 720
NlaIII	CATG	2 cut(s)	659, 769
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	2 cut(s)	516, 596
NspI	RCATGY	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	3 cut(s)	275, 553, 697
PflMI	CCANNNNNTGG	1 cut(s)	693
PfoI	TCCNGGA	1 cut(s)	708
PkrI	GCNGC	3 cut(s)	133, 142, 145
PleI	GAGTC	4 cut(s)	41, 173, 681, 779
PpsI	GAGTC	4 cut(s)	41, 173, 681, 779
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	708
PspPI	GGNCC	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	693
PsuI	RGATCY	1 cut(s)	641
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SaqAI	TTAA	3 cut(s)	378, 534, 611
SatI	GCNGC	3 cut(s)	132, 141, 144
Sau3AI	GATC	5 cut(s)	97, 286, 478, 641, 720
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	4 cut(s)	42, 173, 682, 779
ScrFI	CCNGG	2 cut(s)	215, 710
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	3 cut(s)	259, 673, 784
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	789
SmoI	CTYRAG	1 cut(s)	789
Sse9I	AATT	8 cut(s)	156, 266, 379, 389, 399, 608, 701, 732
SsiI	CCGC	7 cut(s)	129, 132, 138, 141, 144, 188, 394
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	213, 708
TaaI	ACNGT	5 cut(s)	199, 342, 438, 445, 522
TaqI	TCGA	2 cut(s)	90, 365
TaqII	GACCGA	1 cut(s)	753
TasI	AATT	8 cut(s)	156, 266, 379, 389, 399, 608, 701, 732
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	3 cut(s)	134, 143, 146
TfiI	GAWTC	3 cut(s)	275, 553, 697
Tru1I	TTAA	3 cut(s)	378, 534, 611
Tru9I	TTAA	3 cut(s)	378, 534, 611
TscAI	CASTG	2 cut(s)	316, 694
TseFI	GTSAC	2 cut(s)	516, 596
Tsp45I	GTSAC	2 cut(s)	516, 596
TspDTI	ATGAA	4 cut(s)	267, 393, 566, 621
TspRI	CASTG	2 cut(s)	316, 694
Van91I	CCANNNNNTGG	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	63
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	769
XmiI	GTMKAC	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.