Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002112

Physical Location & Seq

Genomic Coordinates Reverse (-)

20421740 .. 20424976

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0128200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGATAGCTTTAATGGGAAGCTTCTTGAGAGGAAAAGGGCTGGTCTCGACACCAAAGACATTGACCAAGAAGATGAGGAGGACTACATGCGTCTCACACCATTGATAGAGAAGCTTAAGAAGGAGAAGCTCAAGACCACTGGGGATCTCAATTCCTATGAGGAGCCCACCGATTCTGGTAGCGACGATGACGACGAGTGGTTCAGTCCCGATGCCATCAGGAAGAGGGTTGATGAGTTTCAGAGGAAGTTCACGCGACACGAGGAATTGCTCAAGAATTTCACACAGGCTAGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

99

Amino Acids

11.69

Weight (kDa)

4.69

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04830 AT1G04830 AT1G04830 AT4G13730 AT4G13730 AT4G13730
fragaria_vesca	FvH4_1g03180 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770
malus_domestica	MD02G1030800.v1.1 MD04G1012300.v1.1 MD13G1283700.v1.1
prunus_persica	Prupe.1G158400_v2.0.a1 Prupe.7G243700_v2.0.a1 Prupe.7G243700_v2.0.a1
pyrus_communis	pycom02g02570 pycom04g00970 pycom04g00980 pycom15g15410 pycom420g01230
rosa_chinensis	RchiOBHm_Chr2g0088311 RchiOBHm_Chr4g0414611
rosa_laevigata	RLG00000008143 RLG00000015941
rosa_multiflora	Rmu_sc0004235.1_g000035 Rmu_sc0007034.1_g000031 Rmu_sc0012211.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358370
rosa_rugosa	Rorug01G0482800 Rorug04G0128100 Rorug04G0128200
rosa_samantha	Rh2AG037900 Rh2BG037100 Rh2CG038200 Rh2DG037600 Rh4AG186900 Rh4BG185600 Rh4CG199000 Rh4DG185100
rosa_wichuraiana	Rw2G002990 Rw4G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	256
AclWI	GGATC	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	1 cut(s)	295
AflII	CTTAAG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	9, 22, 115, 130
AluI	AGCT	4 cut(s)	9, 22, 115, 130
Alw26I	GTCTC	2 cut(s)	50, 98
AlwI	GGATC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	260
BccI	CCATC	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	50, 98
BfaI	CTAG	1 cut(s)	291
BfrI	CTTAAG	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	150
BpuEI	CTTGAG	3 cut(s)	47, 116, 257
BsaI	GGTCTC	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	92, 176
Bsh1236I	CGCG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	50, 98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	153
BspTI	CTTAAG	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	145
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	2 cut(s)	50, 98
BstMBI	GATC	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	91
BstUI	CGCG	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	138
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	7 cut(s)	9, 22, 41, 115, 130, 166, 290
CviKI_1	RGCY	7 cut(s)	9, 22, 41, 115, 130, 166, 290
CviQI	GTAC	1 cut(s)	294
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	89, 159, 298
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	91
HindIII	AAGCTT	2 cut(s)	20, 113
HinfI	GANTC	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	6 cut(s)	26, 47, 133, 209, 220, 274
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	188, 197
HpyAV	CCTTC	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	27, 126, 162, 205, 272
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	291
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	83, 235
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	3 cut(s)	151, 266, 277
MnlI	CCTC	7 cut(s)	24, 70, 73, 154, 219, 237, 256
MseI	TTAA	2 cut(s)	12, 117
MspCI	CTTAAG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	256
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	165
NspI	RCATGY	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	12, 117
Sau3AI	GATC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	4 cut(s)	11, 24, 117, 132
SfaNI	GCATC	1 cut(s)	202
SmlI	CTYRAG	4 cut(s)	26, 116, 131, 272
SmoI	CTYRAG	4 cut(s)	26, 116, 131, 272
Sse9I	AATT	3 cut(s)	151, 266, 277
SspMI	CTAG	1 cut(s)	291
TaqI	TCGA	1 cut(s)	48
TasI	AATT	3 cut(s)	151, 266, 277
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	12, 117
Tru9I	TTAA	2 cut(s)	12, 117
TscAI	CASTG	1 cut(s)	145
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	91
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.