Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Reverse (-)

2078880 .. 2082097

Gene Structure 3218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGATGATTAAGGTGAAGAAGGAGACGATGAGGGCATGCTTAAGCTGCTCTATCTGCGACAATATCCTCCGTGACGCCACCACTATCTCCGAGTGCCTCCACACATTTTGTAGGAAATGCATCTATGAGAAGATCACGGAGGATGAGATAGAGACTTGTCCCGTATGCAATATCGACCTCGGTAGCACCCCATTGGAGAAGCTGAGGCCTGACCACAATTTGCAAGACTTGAGGGCCAAAATCTTTGCTCTAAAACGAAGAAAAGTGAAAGCTCCTGGAATTGTGTCCTTACCAGGAAAGAGGAAGGAGAGATCTATATCTTCTTTGGTTGTGAGCACACCTATGGTGTCAGCACAAGCTGGAACAACGAGAAGAAGAACTAAAGCACCTACAAGAAAAGAGTTACGTAATGGTTCTTTGGCTGAGAGAACTGTGAAGAAGGAAGAATCTTCTGGGGATGAGCTTCTGGAGAGCACAAGCTCACCCGACACTCTTAACAAATTCACTCAGAATAAAAGACAGTCAAAGAAGTCATGTAAAGAGTCCATCTCCAATAAAGAAAACAAGGATGGTGATGAACCCTGGGATTCCAAAATGGATTGGAAACCTTTGAACTTTCTGGTTGAAGTGGCAAATGGGACAAAGCCCTTGAAGTCTTCTGCTTCTCAAGGGTCAGGTTCAAAATCTGAGCACGCGAATGTATCTCGCAATCAATTTCAAGGGAGTAAAACCAAAACTAAGAATAAAAAGAGAAAATGTAAACGTGAGGATGACAAGAGTAATAATGGTGATCCTACAACATCAGAAACTGTTACTCCTAAAAGAATGCGTACAACTCAACGCAAAAGGTCTGCCACCACTTTAGGCGATTCAAGGAATTTGCCACAACCAGATGAGTCAAGTGCAAAACAGGAGAGGAGAAATGGTCCCGTTTGGTTCTCACTTGTGGCGTCCAATGATCAGGAAGGAGGAACTTCTTTACCTCAAATTCCAGCAAATTTTTTGAGAATAAGGGATGGAAATACAACAGTTTCTTTCATCCAAAAGTACCTCATGAGGAAGCTAGATCTCGAGAGTGAAAATGAGATAGAGATAAAGTGTATGGGAGAAGCGGTGATCCCAACGCTGACGCTTTACAATTTAGTGGATCTATGGCTCCAGAAAAGTTCAAACCACCAACGGTTTGCTGCATTGGTAGGTTCTTCTGCAAAGGATTTTACGATGGTTCTTGTCTATGCTCGGAAGCTACCAGAGTGCAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

421

Amino Acids

47.33

Weight (kDa)

9.58

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	695
AciI	CCGC	1 cut(s)	1112
AclWI	GGATC	3 cut(s)	785, 1111, 1155
AcsI	RAATTY	4 cut(s)	500, 877, 987, 997
AcyI	GRCGYC	2 cut(s)	75, 950
AfaI	GTAC	2 cut(s)	832, 1049
AflII	CTTAAG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	1260
AgsI	TTSAA	7 cut(s)	613, 626, 652, 681, 719, 873, 1170
AjnI	CCWGG	3 cut(s)	274, 292, 581
AluBI	AGCT	8 cut(s)	45, 202, 272, 359, 463, 480, 1063, 1246
AluI	AGCT	8 cut(s)	45, 202, 272, 359, 463, 480, 1063, 1246
Alw21I	GWGCWC	3 cut(s)	338, 476, 693
Alw26I	GTCTC	2 cut(s)	17, 146
AlwI	GGATC	3 cut(s)	785, 1111, 1155
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	1070
AoxI	GGCC	2 cut(s)	206, 234
ApeKI	GCWGC	2 cut(s)	45, 1187
ApoI	RAATTY	4 cut(s)	500, 877, 987, 997
AspS9I	GGNCC	2 cut(s)	234, 926
AsuHPI	GGTGA	5 cut(s)	25, 474, 584, 800, 1126
AvaI	CYCGRG	1 cut(s)	1070
AvaII	GGWCC	1 cut(s)	926
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	3 cut(s)	338, 476, 693
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	32, 1174
BccI	CCATC	4 cut(s)	554, 563, 1010, 1216
BciT130I	CCWGG	3 cut(s)	276, 294, 583
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	2 cut(s)	17, 146
BfaI	CTAG	1 cut(s)	1064
BfrI	CTTAAG	1 cut(s)	40
BglII	AGATCT	2 cut(s)	311, 1066
BisI	GCNGC	2 cut(s)	46, 1188
BlsI	GCNGC	2 cut(s)	47, 1189
Bme1390I	CCNGG	3 cut(s)	276, 294, 583
Bme18I	GGWCC	1 cut(s)	926
BmeT110I	CYCGRG	1 cut(s)	1070
BmgT120I	GGNCC	2 cut(s)	234, 926
BmiI	GGNNCC	2 cut(s)	928, 1157
BmrFI	CCNGG	3 cut(s)	276, 294, 583
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	2 cut(s)	488, 1142
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	250, 651
BsaAI	YACGTR	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	316
BsaHI	GRCGYC	2 cut(s)	75, 950
BsaJI	CCNNGG	3 cut(s)	178, 581, 582
BsaXI	ACNNNNNCTCC	6 cut(s)	799, 829, 910, 940, 1098, 1128
Bse8I	GATNNNNATC	1 cut(s)	316
BseBI	CCWGG	3 cut(s)	276, 294, 583
BseDI	CCNNGG	3 cut(s)	178, 581, 582
BseGI	GGATG	6 cut(s)	148, 463, 574, 775, 1021, 1038
BseJI	GATNNNNATC	1 cut(s)	316
BseMII	CTCAG	4 cut(s)	194, 414, 521, 678
BseRI	GAGGAG	1 cut(s)	931
BseXI	GCAGC	2 cut(s)	32, 1174
Bsh1236I	CGCG	1 cut(s)	695
BshFI	GGCC	2 cut(s)	208, 236
BsiHKAI	GWGCWC	3 cut(s)	338, 476, 693
BsiHKCI	CYCGRG	1 cut(s)	1070
BslFI	GGGAC	3 cut(s)	144, 652, 912
BsmAI	GTCTC	2 cut(s)	17, 146
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	3 cut(s)	144, 652, 912
BsmI	GAATGC	1 cut(s)	831
BsnI	GGCC	2 cut(s)	208, 236
BsoBI	CYCGRG	1 cut(s)	1070
Bsp1286I	GDGCHC	3 cut(s)	338, 476, 693
Bsp143I	GATC	7 cut(s)	132, 311, 790, 958, 1066, 1116, 1147
BspACI	CCGC	1 cut(s)	1112
BspANI	GGCC	2 cut(s)	208, 236
BspCNI	CTCAG	4 cut(s)	195, 415, 520, 679
BspFNI	CGCG	1 cut(s)	695
BspHI	TCATGA	1 cut(s)	1053
BspLI	GGNNCC	2 cut(s)	928, 1157
BspPI	GGATC	3 cut(s)	785, 1111, 1155
BspTI	CTTAAG	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	178, 581, 582
BssMI	GATC	7 cut(s)	132, 311, 790, 958, 1066, 1116, 1147
BssNI	GRCGYC	2 cut(s)	75, 950
Bst2UI	CCWGG	3 cut(s)	276, 294, 583
Bst4CI	ACNGT	5 cut(s)	433, 522, 811, 1030, 1182
BstACI	GRCGYC	2 cut(s)	75, 950
BstAFI	CTTAAG	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	37, 693
BstDEI	CTNAG	5 cut(s)	203, 423, 507, 687, 738
BstF5I	GGATG	6 cut(s)	148, 463, 574, 775, 1021, 1038
BstFNI	CGCG	1 cut(s)	695
BstKTI	GATC	7 cut(s)	135, 314, 793, 961, 1069, 1119, 1150
BstMAI	GTCTC	2 cut(s)	17, 146
BstMBI	GATC	7 cut(s)	132, 311, 790, 958, 1066, 1116, 1147
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 54
BstNI	CCWGG	3 cut(s)	276, 294, 583
BstNSI	RCATGY	2 cut(s)	39, 1264
BstSCI	CCNGG	3 cut(s)	274, 292, 581
BstSNI	TACGTA	1 cut(s)	407
BstUI	CGCG	1 cut(s)	695
BstV1I	GCAGC	2 cut(s)	32, 1174
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	3 cut(s)	311, 1066, 1147
BstYI	RGATCY	3 cut(s)	311, 1066, 1147
BsuRI	GGCC	2 cut(s)	208, 236
BtsCI	GGATG	6 cut(s)	148, 463, 574, 775, 1021, 1038
Cac8I	GCNNGC	2 cut(s)	37, 693
CaiI	CAGNNNCTG	1 cut(s)	809
CciI	TCATGA	1 cut(s)	1053
Cfr13I	GGNCC	2 cut(s)	234, 926
CseI	GACGC	3 cut(s)	83, 939, 1138
Csp6I	GTAC	2 cut(s)	831, 1048
CspCI	CAANNNNNGTGG	2 cut(s)	89, 124
CviAII	CATG	4 cut(s)	36, 534, 1054, 1261
CviQI	GTAC	2 cut(s)	831, 1048
DdeI	CTNAG	5 cut(s)	203, 423, 507, 687, 738
DpnI	GATC	7 cut(s)	134, 313, 792, 960, 1068, 1118, 1149
DpnII	GATC	7 cut(s)	132, 311, 790, 958, 1066, 1116, 1147
Eco105I	TACGTA	1 cut(s)	407
Eco147I	AGGCCT	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	926
Eco88I	CYCGRG	1 cut(s)	1070
EcoRII	CCWGG	3 cut(s)	274, 292, 581
EcoT22I	ATGCAT	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	4 cut(s)	39, 537, 1057, 1264
FaqI	GGGAC	3 cut(s)	144, 652, 912
FatI	CATG	4 cut(s)	35, 533, 1053, 1260
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	2 cut(s)	46, 1188
FokI	GGATG	6 cut(s)	155, 470, 581, 782, 1025, 1028
Fsp4HI	GCNGC	2 cut(s)	46, 1188
FspBI	CTAG	1 cut(s)	1064
GluI	GCNGC	2 cut(s)	46, 1188
GsuI	CTGGAG	2 cut(s)	488, 1142
HaeIII	GGCC	2 cut(s)	208, 236
HgaI	GACGC	3 cut(s)	83, 939, 1138
Hin1I	GRCGYC	2 cut(s)	75, 950
Hin1II	CATG	4 cut(s)	39, 537, 1057, 1264
HinfI	GANTC	5 cut(s)	446, 542, 587, 869, 896
HphI	GGTGA	5 cut(s)	25, 474, 584, 800, 1126
Hpy166II	GTNNAC	1 cut(s)	761
Hpy188I	TCNGA	5 cut(s)	91, 510, 688, 805, 1242
Hpy188III	TCNNGA	6 cut(s)	467, 962, 1054, 1070, 1072, 1159
Hpy8I	GTNNAC	1 cut(s)	761
HpyAV	CCTTC	4 cut(s)	13, 298, 433, 959
HpyCH4III	ACNGT	5 cut(s)	433, 522, 811, 1030, 1182
HpyCH4IV	ACGT	2 cut(s)	406, 763
HpyCH4V	TGCA	7 cut(s)	120, 168, 223, 905, 1190, 1208, 1257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 54
HpyF3I	CTNAG	5 cut(s)	203, 423, 507, 687, 738
HpySE526I	ACGT	2 cut(s)	406, 763
Hsp92I	GRCGYC	2 cut(s)	75, 950
Hsp92II	CATG	4 cut(s)	39, 537, 1057, 1264
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	7 cut(s)	132, 311, 790, 958, 1066, 1116, 1147
LmnI	GCTCC	2 cut(s)	277, 1161
Lsp1109I	GCAGC	2 cut(s)	32, 1174
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	1064
MaeII	ACGT	2 cut(s)	406, 763
MaeIII	GTNAC	3 cut(s)	71, 402, 811
MalI	GATC	7 cut(s)	134, 313, 792, 960, 1068, 1118, 1149
MboI	GATC	7 cut(s)	132, 311, 790, 958, 1066, 1116, 1147
MflI	RGATCY	3 cut(s)	311, 1066, 1147
MhlI	GDGCHC	3 cut(s)	338, 476, 693
MluCI	AATT	8 cut(s)	217, 279, 500, 713, 877, 987, 997, 1138
MlyI	GAGTC	2 cut(s)	551, 905
Mph1103I	ATGCAT	1 cut(s)	122
MseI	TTAA	3 cut(s)	9, 41, 495
MslI	CAYNNNNRTG	2 cut(s)	341, 696
MspCI	CTTAAG	1 cut(s)	40
MspR9I	CCNGG	3 cut(s)	276, 294, 583
Mva1269I	GAATGC	1 cut(s)	831
MvaI	CCWGG	3 cut(s)	276, 294, 583
MvnI	CGCG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	45, 54
NdeII	GATC	7 cut(s)	132, 311, 790, 958, 1066, 1116, 1147
NlaIII	CATG	4 cut(s)	39, 537, 1057, 1264
NlaIV	GGNNCC	2 cut(s)	928, 1157
NmuCI	GTSAC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	122
NspI	RCATGY	2 cut(s)	39, 1264
PaeI	GCATGC	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	1070
PagI	TCATGA	1 cut(s)	1053
PasI	CCCWGGG	1 cut(s)	582
PceI	AGGCCT	1 cut(s)	208
PciI	ACATGT	1 cut(s)	1260
PctI	GAATGC	1 cut(s)	831
PfeI	GAWTC	3 cut(s)	446, 587, 869
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	47, 1189
PleI	GAGTC	2 cut(s)	550, 904
PpsI	GAGTC	2 cut(s)	550, 904
Ppu21I	YACGTR	1 cut(s)	407
PscI	ACATGT	1 cut(s)	1260
Psp6I	CCWGG	3 cut(s)	274, 292, 581
PspGI	CCWGG	3 cut(s)	274, 292, 581
PspN4I	GGNNCC	2 cut(s)	928, 1157
PspPI	GGNCC	2 cut(s)	234, 926
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	3 cut(s)	311, 1066, 1147
RsaI	GTAC	2 cut(s)	832, 1049
RsaNI	GTAC	2 cut(s)	831, 1048
RseI	CAYNNNNRTG	2 cut(s)	341, 696
SaqAI	TTAA	3 cut(s)	9, 41, 495
SatI	GCNGC	2 cut(s)	46, 1188
Sau3AI	GATC	7 cut(s)	132, 311, 790, 958, 1066, 1116, 1147
Sau96I	GGNCC	2 cut(s)	234, 926
SchI	GAGTC	2 cut(s)	551, 905
ScrFI	CCNGG	3 cut(s)	276, 294, 583
SduI	GDGCHC	3 cut(s)	338, 476, 693
SfaNI	GCATC	1 cut(s)	129
Sfr274I	CTCGAG	1 cut(s)	1070
SinI	GGWCC	1 cut(s)	926
SlaI	CTCGAG	1 cut(s)	1070
SmiMI	CAYNNNNRTG	2 cut(s)	341, 696
SmlI	CTYRAG	4 cut(s)	40, 229, 666, 1070
SmoI	CTYRAG	4 cut(s)	40, 229, 666, 1070
SnaBI	TACGTA	1 cut(s)	407
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	8 cut(s)	217, 279, 500, 713, 877, 987, 997, 1138
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	1 cut(s)	1112
SspMI	CTAG	1 cut(s)	1064
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	3 cut(s)	274, 292, 581
TaaI	ACNGT	5 cut(s)	433, 522, 811, 1030, 1182
TaiI	ACGT	2 cut(s)	409, 766
TaqI	TCGA	2 cut(s)	174, 1071
TasI	AATT	8 cut(s)	217, 279, 500, 713, 877, 987, 997, 1138
TfiI	GAWTC	3 cut(s)	446, 587, 869
Tru1I	TTAA	3 cut(s)	9, 41, 495
Tru9I	TTAA	3 cut(s)	9, 41, 495
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	45, 1187
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	591, 1027
TspGWI	ACGGA	2 cut(s)	59, 152
Vha464I	CTTAAG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	926
XapI	RAATTY	4 cut(s)	500, 877, 987, 997
XceI	RCATGY	2 cut(s)	39, 1264
XhoI	CTCGAG	1 cut(s)	1070
XspI	CTAG	1 cut(s)	1064
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.