Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Reverse (-)

74451064 .. 74453419

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0630000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTTGAAAGAGGAGGCGGCGCCGATGTTGAGCGTGGAGGCTTCTGCCACAGGTTCGGAGGTGACTGTGGTCGCGGCGGTAGGCGCCGCGGTGCTGGGCCTGAGAGAATCATGAAGATCATGCCGGTTCAGAAGCAAACCGTTTTGGTTAGAGGGCTTCTTCTGACGAGGAACCTGCTTCTCATTGCTATATTCAATATCACTGGGTATGATATTGATGCATTTTCTACTCACTTCCTCAGTTCCTCTATCTCGGCCATGTTCCCCAACCCTAGTTGGCCGTCCCACAAGCTCTTCAACAAGACGTCGTGGACCGACTTCGATTACTGCAAAATCCCGCCAGCTTTCTTGATGCCTAGGTGGTTCGCAAAGCGTTTCTTACATCCTGATATAGTTTATCAATATAGTCGCATTCTTCTACAGGATGAGGACCTTGGAGTTGACAATCTCAATCCTCAACGGTATGTGTCCATTGTTCGAAAGGAAGGGCTTGAAATATCACAACCGGCACTTGATTTTTCCAAGACAGAGGTGAACTATATGGAGAAACTTTCAAAAGAGGAGGGGATTCAGAAGAAACTCAGCAAGGATATTTTGCAATATAAAGCTCATATAATCAAGATATTTGCGGAACATAGGTACAATTGGATCTCTGCAGATTTAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

223

Amino Acids

25.69

Weight (kDa)

9.2

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	121 - 188	1.7e-25	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	183
AccB1I	GGYRCC	2 cut(s)	20, 84
AccII	CGCG	2 cut(s)	75, 90
AciI	CCGC	7 cut(s)	18, 75, 78, 88, 90, 338, 629
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	2 cut(s)	255, 278
AcyI	GRCGYC	3 cut(s)	21, 85, 305
AfaI	GTAC	1 cut(s)	641
AgsI	TTSAA	5 cut(s)	8, 196, 298, 494, 555
AluBI	AGCT	3 cut(s)	292, 344, 608
AluI	AGCT	3 cut(s)	292, 344, 608
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	3 cut(s)	98, 255, 278
AspA2I	CCTAGG	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	23, 87
AspS9I	GGNCC	3 cut(s)	98, 312, 430
AsuHPI	GGTGA	2 cut(s)	74, 544
AsuII	TTCGAA	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	312, 430
AvrII	CCTAGG	1 cut(s)	356
BanI	GGYRCC	2 cut(s)	20, 84
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BfaI	CTAG	2 cut(s)	273, 357
BfmI	CTRYAG	2 cut(s)	419, 654
BfoI	RGCGCY	2 cut(s)	24, 88
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	3 cut(s)	19, 76, 88
BlnI	CCTAGG	1 cut(s)	356
BlsI	GCNGC	3 cut(s)	20, 77, 89
Bme18I	GGWCC	2 cut(s)	312, 430
BmgT120I	GGNCC	3 cut(s)	98, 312, 430
BmiI	GGNNCC	3 cut(s)	22, 86, 173
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	208, 342
BmuI	ACTGGG	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	478
BsaHI	GRCGYC	3 cut(s)	21, 85, 305
BsaJI	CCNNGG	3 cut(s)	88, 356, 433
Bse118I	RCCGGY	2 cut(s)	124, 505
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	88, 356, 433
BseGI	GGATG	2 cut(s)	382, 430
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	3 cut(s)	93, 253, 595
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	27, 575
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	2 cut(s)	75, 90
BshFI	GGCC	3 cut(s)	100, 257, 280
BshNI	GGYRCC	2 cut(s)	20, 84
BsiSI	CCGG	2 cut(s)	125, 506
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	3 cut(s)	100, 257, 280
Bsp119I	TTCGAA	1 cut(s)	478
Bsp143I	GATC	2 cut(s)	117, 648
BspACI	CCGC	7 cut(s)	18, 75, 78, 88, 90, 338, 629
BspANI	GGCC	3 cut(s)	100, 257, 280
BspCNI	CTCAG	3 cut(s)	94, 252, 594
BspFNI	CGCG	2 cut(s)	75, 90
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	22, 86, 173
BspMAI	CTGCAG	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	656
BspQI	GCTCTTC	1 cut(s)	299
BspT104I	TTCGAA	1 cut(s)	478
BspT107I	GGYRCC	2 cut(s)	20, 84
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	124, 505
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	2 cut(s)	124, 505
BssECI	CCNNGG	3 cut(s)	88, 356, 433
BssMI	GATC	2 cut(s)	117, 648
BssNI	GRCGYC	3 cut(s)	21, 85, 305
BssT1I	CCWWGG	2 cut(s)	356, 433
Bst4CI	ACNGT	3 cut(s)	68, 142, 462
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	3 cut(s)	21, 85, 305
BstBI	TTCGAA	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	102, 239, 581
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	382, 430
BstFNI	CGCG	2 cut(s)	75, 90
BstH2I	RGCGCY	2 cut(s)	24, 88
BstHHI	GCGC	2 cut(s)	23, 87
BstKTI	GATC	2 cut(s)	120, 651
BstMBI	GATC	2 cut(s)	117, 648
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSFI	CTRYAG	2 cut(s)	419, 654
BstUI	CGCG	2 cut(s)	75, 90
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	100, 257, 280
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	382, 430
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	342
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	2 cut(s)	23, 87
Cfr10I	RCCGGY	2 cut(s)	124, 505
Cfr13I	GGNCC	3 cut(s)	98, 312, 430
Cfr42I	CCGCGG	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	3 cut(s)	112, 121, 259
CviJI	RGCY	9 cut(s)	42, 100, 157, 257, 280, 292, 344, 490, 608
CviKI_1	RGCY	9 cut(s)	42, 100, 157, 257, 280, 292, 344, 490, 608
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	3 cut(s)	102, 239, 581
DinI	GGCGCC	2 cut(s)	22, 86
DpnI	GATC	2 cut(s)	119, 650
DpnII	GATC	2 cut(s)	117, 648
EaeI	YGGCCR	2 cut(s)	255, 278
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco130I	CCWWGG	2 cut(s)	356, 433
Eco47I	GGWCC	2 cut(s)	312, 430
EcoO109I	RGGNCCY	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	356, 433
EcoT22I	ATGCAT	1 cut(s)	223
EgeI	GGCGCC	2 cut(s)	22, 86
EheI	GGCGCC	2 cut(s)	22, 86
ErhI	CCWWGG	2 cut(s)	356, 433
FaeI	CATG	3 cut(s)	115, 124, 262
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	3 cut(s)	111, 120, 258
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	19, 76, 88
FokI	GGATG	2 cut(s)	369, 437
Fsp4HI	GCNGC	3 cut(s)	19, 76, 88
FspBI	CTAG	2 cut(s)	273, 357
GlaI	GCGC	2 cut(s)	22, 86
GluI	GCNGC	3 cut(s)	19, 76, 88
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	2 cut(s)	24, 88
HaeIII	GGCC	3 cut(s)	100, 257, 280
HapII	CCGG	2 cut(s)	125, 506
HhaI	GCGC	2 cut(s)	23, 87
Hin1I	GRCGYC	3 cut(s)	21, 85, 305
Hin1II	CATG	3 cut(s)	115, 124, 262
Hin6I	GCGC	2 cut(s)	21, 85
HinP1I	GCGC	2 cut(s)	21, 85
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	108, 568
HpaII	CCGG	2 cut(s)	125, 506
HphI	GGTGA	2 cut(s)	74, 544
Hpy166II	GTNNAC	3 cut(s)	312, 442, 535
Hpy188I	TCNGA	4 cut(s)	59, 132, 165, 573
Hpy188III	TCNNGA	4 cut(s)	112, 349, 386, 619
Hpy8I	GTNNAC	3 cut(s)	312, 442, 535
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	3 cut(s)	68, 142, 462
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	4 cut(s)	221, 330, 598, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	3 cut(s)	102, 239, 581
HpySE526I	ACGT	1 cut(s)	305
Hsp92I	GRCGYC	3 cut(s)	21, 85, 305
Hsp92II	CATG	3 cut(s)	115, 124, 262
HspAI	GCGC	2 cut(s)	21, 85
KasI	GGCGCC	2 cut(s)	20, 84
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	117, 648
LguI	GCTCTTC	1 cut(s)	299
LweI	GCATC	2 cut(s)	208, 342
MaeI	CTAG	2 cut(s)	273, 357
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	2 cut(s)	119, 650
MboI	GATC	2 cut(s)	117, 648
MboII	GAAGA	5 cut(s)	127, 152, 286, 407, 586
MfeI	CAATTG	1 cut(s)	643
MflI	RGATCY	1 cut(s)	648
MluCI	AATT	1 cut(s)	643
Mly113I	GGCGCC	2 cut(s)	21, 85
Mph1103I	ATGCAT	1 cut(s)	223
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	2 cut(s)	125, 506
MunI	CAATTG	1 cut(s)	643
Mva1269I	GAATGC	1 cut(s)	411
MvnI	CGCG	2 cut(s)	75, 90
MwoI	GCNNNNNNNGC	1 cut(s)	84
NarI	GGCGCC	2 cut(s)	21, 85
NdeII	GATC	2 cut(s)	117, 648
NlaIII	CATG	3 cut(s)	115, 124, 262
NlaIV	GGNNCC	3 cut(s)	22, 86, 173
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	478
PagI	TCATGA	1 cut(s)	111
PciSI	GCTCTTC	1 cut(s)	299
PctI	GAATGC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	108, 568
PkrI	GCNGC	3 cut(s)	20, 77, 89
PluTI	GGCGCC	2 cut(s)	24, 88
PpuMI	RGGWCCY	1 cut(s)	430
PshAI	GACNNNNGTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	22, 86, 173
PspPI	GGNCC	3 cut(s)	98, 312, 430
PspPPI	RGGWCCY	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	648
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
SacII	CCGCGG	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	299
SatI	GCNGC	3 cut(s)	19, 76, 88
Sau3AI	GATC	2 cut(s)	117, 648
Sau96I	GGNCC	3 cut(s)	98, 312, 430
SfaNI	GCATC	2 cut(s)	208, 342
SfcI	CTRYAG	2 cut(s)	419, 654
SfoI	GGCGCC	2 cut(s)	22, 86
Sfr303I	CCGCGG	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	478
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	2 cut(s)	312, 430
Sse9I	AATT	1 cut(s)	643
SsiI	CCGC	7 cut(s)	18, 75, 78, 88, 90, 338, 629
SspDI	GGCGCC	2 cut(s)	20, 84
SspMI	CTAG	2 cut(s)	273, 357
StyI	CCWWGG	2 cut(s)	356, 433
TaaI	ACNGT	3 cut(s)	68, 142, 462
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	321, 478
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	1 cut(s)	643
TauI	GCSGC	3 cut(s)	21, 78, 90
TfiI	GAWTC	2 cut(s)	108, 568
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	312, 430
XmaJI	CCTAGG	1 cut(s)	356
XspI	CTAG	2 cut(s)	273, 357
ZraI	GACGTC	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.