Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Reverse (-)

21996916 .. 22000229

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19090.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCGAATCCGGTGGTGAGAGTGAGGAGGGAGACGATTGCGGCATGCATGACTTGTCCTCTCTGCGATAAGCTCTTCAGAGACGCCACCACCATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATATATAATAAGATTTCAGACGAGGAACTAGAAGTCTGTCCAATATGCAACATAGACCTGGGTTGTGTTCCACTGGAGAAATTAAGGCCAGATCACAGCTGGCAAGATGTAAGGGCTAAGATTTTCCCTTTTAAAAGAAGAAAGGTAAGTGCACCTGAAGTTATGCCTTCAGTTACATTACCAGCTAGAAGAAAGGAGAGATCTCTCTCATCTTTGGTGGTCAGCACTCCCAGAGTGTCAGCCCAGGCTACCATGACGGGAAGGAGAACTAAAGCTGTTGCAAGAAAGGCTTCTGCTTTACAAGCATCCAGTTTTTTGGTTGAGAGGCCTATTAAGAACGAGGAAGGTTCAGCAGAAGATCACCTAGAGAGCAACAGCTCACCTGAAGCCTCAAATAAGTCTGGTCAAAATAACAAGCCGAATTCTTTTTCTGCTGAGCCTAGCCAGCCTGTATCCAATAAAGAAACTGAGGACAGCGGTGAACCATGGGAAGGGAAATTGGATCTTTGGAAACCATTAAATTGTTTGGTCGAAGTTGCGAATAGGACCAAGTCTCTCAAATCCAACTCCCAAGGGTCTGAAAATAAAGTAGAACCAGTGCATGTAAGTGAACCTCAGGTTCGCAAGTCCAAAAATAAGGAAAACAAACAGAAATCAAAAGTTGAGGAGGAAAAGAATAGCACTTATCCTACCTCTCCAGAAACAGTAAAACCTAAAAAGTTGCGTAGGGTTCGACGAAAGAGGGAATCATTTGCAGAATCAAGCATTTCACCCCAAGCTGTTTTGGATGCAACTTTTGGCAAACATGAAAGAAAAGCCGGTCCAATTTGGTTCTCACTCGTAGCTTCTGAAGACCAGGAAGGAGATGAACCCTTGCCTCAAATTCCGACAAGTTACTTAAGGATAAAGGATGGGAACGTGCCTGTCTCGTTCATCCAGAAATACCTAATGAGGAAACTTGACCTCACTAGCGAAGCTGAGGTTGAGATTAAATGTATGGGACAACCAGTGGTTCCCACGTTAGAAATGTATAACTTAGTTGATCTGTGGCTACAAATGGCATCCCCTTCGGAACGAATTACAGCATCTGTCGGGTCCTCTGCGAAAGATTTTGTGATGGTGCTGGCTTATTCCCGAAAGGTCTCAAACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

428

Amino Acids

47.79

Weight (kDa)

9.1

Isoelectric Point (pI)

64.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 606
AclWI	GGATC	1 cut(s)	639
AcsI	RAATTY	2 cut(s)	550, 1011
AcuI	CTGAAG	5 cut(s)	61, 282, 306, 534, 999
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	620
AflII	CTTAAG	1 cut(s)	1027
AflIII	ACRYGT	1 cut(s)	111
AjnI	CCWGG	3 cut(s)	186, 372, 984
AluBI	AGCT	8 cut(s)	73, 228, 314, 404, 507, 908, 974, 1106
AluI	AGCT	8 cut(s)	73, 228, 314, 404, 507, 908, 974, 1106
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	5 cut(s)	26, 75, 687, 1060, 1276
Alw44I	GTGCAC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	639
AlwNI	CAGNNNCTG	1 cut(s)	1217
AoxI	GGCC	2 cut(s)	215, 455
ApaLI	GTGCAC	1 cut(s)	279
ApoI	RAATTY	2 cut(s)	550, 1011
Asp700I	GAANNNNTTC	2 cut(s)	105, 418
AspS9I	GGNCC	3 cut(s)	675, 950, 1224
AsuHPI	GGTGA	5 cut(s)	28, 482, 501, 620, 891
AvaII	GGWCC	3 cut(s)	675, 950, 1224
AxyI	CCTNAGG	1 cut(s)	744
BaeGI	GKGCMC	1 cut(s)	283
BbsI	GAAGAC	2 cut(s)	98, 987
Bbv12I	GWGCWC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	1107
BccI	CCATC	2 cut(s)	1034, 1240
BcgI	CGANNNNNNTGC	2 cut(s)	1179, 1213
BciT130I	CCWGG	3 cut(s)	188, 374, 986
BciVI	GTATCC	1 cut(s)	592
BcoDI	GTCTC	5 cut(s)	26, 75, 687, 1060, 1276
BfaI	CTAG	5 cut(s)	158, 315, 494, 570, 1098
BfrI	CTTAAG	1 cut(s)	1027
BfuI	GTATCC	1 cut(s)	592
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	3 cut(s)	188, 374, 986
Bme18I	GGWCC	3 cut(s)	675, 950, 1224
BmgT120I	GGNCC	3 cut(s)	675, 950, 1224
BmiI	GGNNCC	2 cut(s)	1143, 1225
BmrFI	CCNGG	3 cut(s)	188, 374, 986
BmsI	GCATC	4 cut(s)	443, 907, 1199, 1223
BpiI	GAAGAC	2 cut(s)	98, 987
BpmI	CTGGAG	2 cut(s)	224, 810
Bpu10I	CCTNAGC	1 cut(s)	1107
Bpu1102I	GCTNAGC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	1276
BsaJI	CCNNGG	4 cut(s)	187, 372, 614, 700
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse118I	RCCGGY	1 cut(s)	947
Bse1I	ACTGG	4 cut(s)	207, 438, 725, 1136
Bse21I	CCTNAGG	1 cut(s)	744
BseBI	CCWGG	3 cut(s)	188, 374, 986
BseDI	CCNNGG	4 cut(s)	187, 372, 614, 700
BseGI	GGATG	5 cut(s)	434, 922, 1045, 1062, 1190
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMII	CTCAG	4 cut(s)	555, 588, 758, 1098
BseNI	ACTGG	4 cut(s)	207, 438, 725, 1136
BseRI	GAGGAG	2 cut(s)	40, 809
BseSI	GKGCMC	1 cut(s)	283
BshFI	GGCC	2 cut(s)	217, 457
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	11, 948
BslFI	GGGAC	1 cut(s)	1143
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	5 cut(s)	26, 75, 687, 1060, 1276
BsmBI	CGTCTC	2 cut(s)	26, 75
BsmFI	GGGAC	1 cut(s)	1143
BsnI	GGCC	2 cut(s)	217, 457
Bso31I	GGTCTC	1 cut(s)	1276
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	5 cut(s)	220, 329, 487, 631, 1171
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	2 cut(s)	41, 606
BspANI	GGCC	2 cut(s)	217, 457
BspCNI	CTCAG	4 cut(s)	556, 589, 757, 1099
BspLI	GGNNCC	2 cut(s)	1143, 1225
BspPI	GGATC	1 cut(s)	639
BspQI	GCTCTTC	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	1027
BspTNI	GGTCTC	1 cut(s)	1276
BsrFI	RCCGGY	1 cut(s)	947
BsrI	ACTGG	4 cut(s)	207, 438, 725, 1136
BssAI	RCCGGY	1 cut(s)	947
BssECI	CCNNGG	4 cut(s)	187, 372, 614, 700
BssMI	GATC	5 cut(s)	220, 329, 487, 631, 1171
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	614, 700
Bst2UI	CCWGG	3 cut(s)	188, 374, 986
Bst4CI	ACNGT	1 cut(s)	835
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	1027
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	4 cut(s)	46, 230, 575, 1254
BstDEI	CTNAG	6 cut(s)	246, 564, 597, 744, 1107, 1165
BstDSI	CCRYGG	1 cut(s)	614
BstF5I	GGATG	5 cut(s)	434, 922, 1045, 1062, 1190
BstKTI	GATC	5 cut(s)	223, 332, 490, 634, 1174
BstMAI	GTCTC	5 cut(s)	26, 75, 687, 1060, 1276
BstMBI	GATC	5 cut(s)	220, 329, 487, 631, 1171
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 416, 431, 574
BstNI	CCWGG	3 cut(s)	188, 374, 986
BstNSI	RCATGY	2 cut(s)	48, 734
BstSCI	CCNGG	3 cut(s)	186, 372, 984
BstSLI	GKGCMC	1 cut(s)	283
BstV2I	GAAGAC	2 cut(s)	98, 987
BstX2I	RGATCY	2 cut(s)	329, 631
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	2 cut(s)	329, 631
Bsu36I	CCTNAGG	1 cut(s)	744
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	217, 457
BtgI	CCRYGG	1 cut(s)	614
BtsCI	GGATG	5 cut(s)	434, 922, 1045, 1062, 1190
BtsIMutI	CAGTG	3 cut(s)	200, 732, 1143
Cac8I	GCNNGC	4 cut(s)	46, 230, 575, 1254
CaiI	CAGNNNCTG	1 cut(s)	1217
Cfr10I	RCCGGY	1 cut(s)	947
Cfr13I	GGNCC	3 cut(s)	675, 950, 1224
CseI	GACGC	1 cut(s)	92
CviAII	CATG	6 cut(s)	45, 49, 382, 615, 731, 935
DdeI	CTNAG	6 cut(s)	246, 564, 597, 744, 1107, 1165
DpnI	GATC	5 cut(s)	222, 331, 489, 633, 1173
DpnII	GATC	5 cut(s)	220, 329, 487, 631, 1171
DraI	TTTAAA	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	614, 700
Eco147I	AGGCCT	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	1276
Eco47I	GGWCC	3 cut(s)	675, 950, 1224
Eco57I	CTGAAG	5 cut(s)	61, 282, 306, 534, 999
Eco81I	CCTNAGG	1 cut(s)	744
EcoO109I	RGGNCCY	1 cut(s)	1224
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	3 cut(s)	186, 372, 984
EcoT14I	CCWWGG	2 cut(s)	614, 700
EcoT22I	ATGCAT	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	614, 700
Esp3I	CGTCTC	2 cut(s)	26, 75
FaeI	CATG	6 cut(s)	48, 52, 385, 618, 734, 938
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	1 cut(s)	1143
FatI	CATG	6 cut(s)	44, 48, 381, 614, 730, 934
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	5 cut(s)	421, 929, 1049, 1052, 1177
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	5 cut(s)	158, 315, 494, 570, 1098
GluI	GCNGC	1 cut(s)	42
GsuI	CTGGAG	2 cut(s)	224, 810
HaeIII	GGCC	2 cut(s)	217, 457
HapII	CCGG	2 cut(s)	11, 948
HgaI	GACGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	6 cut(s)	48, 52, 385, 618, 734, 938
HinfI	GANTC	3 cut(s)	7, 875, 887
HpaII	CCGG	2 cut(s)	11, 948
HphI	GGTGA	5 cut(s)	28, 482, 501, 620, 891
Hpy166II	GTNNAC	3 cut(s)	281, 611, 740
Hpy188I	TCNGA	7 cut(s)	80, 100, 148, 709, 979, 1017, 1201
Hpy188III	TCNNGA	3 cut(s)	827, 1066, 1263
Hpy8I	GTNNAC	3 cut(s)	281, 611, 740
Hpy99I	CGWCG	1 cut(s)	867
HpyAV	CCTTC	6 cut(s)	306, 384, 467, 614, 983, 1206
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4IV	ACGT	3 cut(s)	113, 1047, 1148
HpyCH4V	TGCA	9 cut(s)	48, 120, 129, 177, 281, 410, 730, 884, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 416, 431, 574
HpyF3I	CTNAG	6 cut(s)	246, 564, 597, 744, 1107, 1165
HpySE526I	ACGT	3 cut(s)	113, 1047, 1148
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	6 cut(s)	48, 52, 385, 618, 734, 938
Kzo9I	GATC	5 cut(s)	220, 329, 487, 631, 1171
LguI	GCTCTTC	1 cut(s)	80
LweI	GCATC	4 cut(s)	443, 907, 1199, 1223
MaeI	CTAG	5 cut(s)	158, 315, 494, 570, 1098
MaeII	ACGT	3 cut(s)	113, 1047, 1148
MaeIII	GTNAC	2 cut(s)	301, 1022
MalI	GATC	5 cut(s)	222, 331, 489, 633, 1173
MboI	GATC	5 cut(s)	220, 329, 487, 631, 1171
MboII	GAAGA	6 cut(s)	67, 98, 279, 330, 497, 992
MflI	RGATCY	2 cut(s)	329, 631
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	7 cut(s)	209, 550, 626, 649, 954, 1011, 1206
MmeI	TCCRAC	2 cut(s)	717, 1040
Mph1103I	ATGCAT	1 cut(s)	50
MroXI	GAANNNNTTC	2 cut(s)	105, 418
MseI	TTAA	6 cut(s)	212, 261, 462, 647, 1028, 1119
MslI	CAYNNNNRTG	1 cut(s)	735
MspA1I	CMGCKG	2 cut(s)	228, 606
MspCI	CTTAAG	1 cut(s)	1027
MspI	CCGG	2 cut(s)	11, 948
MspR9I	CCNGG	3 cut(s)	188, 374, 986
MvaI	CCWGG	3 cut(s)	188, 374, 986
MwoI	GCNNNNNNNGC	4 cut(s)	126, 416, 431, 574
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	5 cut(s)	220, 329, 487, 631, 1171
NlaIII	CATG	6 cut(s)	48, 52, 385, 618, 734, 938
NlaIV	GGNNCC	2 cut(s)	1143, 1225
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	2 cut(s)	48, 734
PaeI	GCATGC	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	80
PdmI	GAANNNNTTC	2 cut(s)	105, 418
PfeI	GAWTC	3 cut(s)	7, 875, 887
PflFI	GACNNNGTC	1 cut(s)	679
PkrI	GCNGC	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	1224
Psp5II	RGGWCCY	1 cut(s)	1224
Psp6I	CCWGG	3 cut(s)	186, 372, 984
PspGI	CCWGG	3 cut(s)	186, 372, 984
PspN4I	GGNNCC	2 cut(s)	1143, 1225
PspPI	GGNCC	3 cut(s)	675, 950, 1224
PspPPI	RGGWCCY	1 cut(s)	1224
PstNI	CAGNNNCTG	1 cut(s)	1217
PsuI	RGATCY	2 cut(s)	329, 631
PsyI	GACNNNGTC	1 cut(s)	679
PvuII	CAGCTG	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	735
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	6 cut(s)	212, 261, 462, 647, 1028, 1119
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	5 cut(s)	220, 329, 487, 631, 1171
Sau96I	GGNCC	3 cut(s)	675, 950, 1224
ScrFI	CCNGG	3 cut(s)	188, 374, 986
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	4 cut(s)	443, 907, 1199, 1223
SinI	GGWCC	3 cut(s)	675, 950, 1224
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	1027
SmoI	CTYRAG	1 cut(s)	1027
SphI	GCATGC	1 cut(s)	48
Sse9I	AATT	7 cut(s)	209, 550, 626, 649, 954, 1011, 1206
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	2 cut(s)	41, 606
SspMI	CTAG	5 cut(s)	158, 315, 494, 570, 1098
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	3 cut(s)	186, 372, 984
StyI	CCWWGG	2 cut(s)	614, 700
TaaI	ACNGT	1 cut(s)	835
TaiI	ACGT	3 cut(s)	116, 1050, 1151
TaqI	TCGA	2 cut(s)	660, 862
TasI	AATT	7 cut(s)	209, 550, 626, 649, 954, 1011, 1206
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	7, 875, 887
Tru1I	TTAA	6 cut(s)	212, 261, 462, 647, 1028, 1119
Tru9I	TTAA	6 cut(s)	212, 261, 462, 647, 1028, 1119
TscAI	CASTG	3 cut(s)	207, 732, 1143
TspDTI	ATGAA	3 cut(s)	951, 1011, 1051
TspRI	CASTG	3 cut(s)	207, 732, 1143
Tth111I	GACNNNGTC	1 cut(s)	679
Vha464I	CTTAAG	1 cut(s)	1027
VneI	GTGCAC	1 cut(s)	279
VpaK11BI	GGWCC	3 cut(s)	675, 950, 1224
XapI	RAATTY	2 cut(s)	550, 1011
XceI	RCATGY	2 cut(s)	48, 734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XmnI	GAANNNNTTC	2 cut(s)	105, 418
XspI	CTAG	5 cut(s)	158, 315, 494, 570, 1098
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.