MD04G1225500.v1.1

E3 ubiquitin protein ligase DRIP2-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
30543657 .. 30548777
5121 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1225500.v1.1.491

Sequence Viewer

Length: 1383 bp
ATGGCGGCTGGTGGTGTTGGTGGTGGTCAGGTGGTGAAAGTTAAGAGGGAGAAGCTGGAGGCATGCATGACGTGCCCTCTTTGTAATAAGCTATTGAAGGAGGCTACAACCATTTCACTCTGCCTCCACACGTTTTGCAGGAAGTGCATCTTCGAAAAGCTCTCGGATGAGGAAGGGGACTGCTGTCCCGTCTGTGAAATTGATCTCGGAATTTTACCTGTCGAAAAACTCAGGCCAGACCATAATTTGCAAGATATTATAGCCAAGATATTTCCCGTTAAAGGAAAGAAAGTTGATACACCAGAAGCTAACGTGCCCGAAGCTAATGATCCTGATGTTACACCTTCTTCATTGCCAGTGAAAAGGAAGGAGAGATCATTATCTTCATTGGTAGTCAGTACCCCCAAAGTTCCATTACAGTCAGGTTTGACTGGAAAGAGATCAAGAGCTCTGTCAAGAAAGGGTGCTGTTTTACGAGGATGCAGTTTTTCCGCTGAAGAAGCTGCAAAGAGAGATGATTCTATAGAAGATCATCCAATGAGCTCCAACTCAACTGGTACTCTTGATGAATTCGCACAAAATAAGAGCCAGGATTCACCTGAGCTTTCATATGAGCGAACTGCTAATAAATATATGAACAATGACGTTGAAATAATAGAAGGGAAAGCTGATCTGTGGACGCCCTTAAACTGTCTCGTAGAGGCTGCTAACCGAACCAAGTCCTCGAAGCCAAATTCACAAGGGTTGCATGCCAAGTCTGATCCAACCAGTTCCCTTGATAGTGAACTTTATATGTCTCAAATTAAGGCAGAAGGAGAATTGCCAAATGCTCTGGACTGCATCAGGAATGCATATACGCCCAAAACCAAAAAAAAGGAGGCCGACCAGAAGGCAAGAGGAAAAAATAACAGTAACGGAACAGGGGCATCAGGACCAGTGAAACGTAAAAGGGTGCGCACAGCTAATCAGAACAGGGTAGCTGCATCTGGGGAATCAAGTGCCTCAACTCAACTTATGCTAGATACATGTGGGGCCAAGTATAGAAATGTTCCTGTTTGGTTCTCCTTGGTTGCATCTGAAGACTGGAAAGGAGAAATTTCATTGCCACAGATATCAGCATGTTGCTTGAAAATAAAGGATGGTAAAATGCCCGTATCAACAATCCAGAAGTACCTTGCAATGAAACTTGAACTTAGCAGTGAAAATGAAGTGGAGATACTGTGTCGGGGTCAGCCGGTGCTTCCAACATGGCAACTAGAATCCTTAGTAGAGTTGTGGTGCCGAACAGCACCAACAACAAAAAAAATACCGGTAACAGTTGGCTCCTCTGCTAAAGATTTTGTGATGGTCCTCAATTATTGTCGTAGGGTTCAAACTCCATGA

Protein Analysis

461

Amino Acids

50.29

Weight (kDa)

8.74

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 25 - 65 1.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 25 - 65 4.3e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 956
AccB1I GGYRCC 1 cut(s) 1278
AciI CCGC 2 cut(s) 5, 492
AclWI GGATC 2 cut(s) 323, 755
AcsI RAATTY 4 cut(s) 210, 569, 733, 1095
AcuI CTGAAG 2 cut(s) 516, 1098
AcyI GRCGYC 1 cut(s) 680
AfaI GTAC 3 cut(s) 400, 559, 1172
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 2 cut(s) 129, 1025
AgeI ACCGGT 1 cut(s) 1309
AgsI TTSAA 5 cut(s) 97, 650, 1129, 1190, 1373
AjiI CACGTC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 588
Alw21I GWGCWC 2 cut(s) 451, 545
Alw26I GTCTC 2 cut(s) 698, 801
AlwI GGATC 2 cut(s) 323, 755
AoxI GGCC 3 cut(s) 233, 879, 1032
ApeKI GCWGC 3 cut(s) 503, 704, 980
ApoI RAATTY 4 cut(s) 210, 569, 733, 1095
AsiGI ACCGGT 1 cut(s) 1309
AspLEI GCGC 1 cut(s) 957
AspS9I GGNCC 3 cut(s) 932, 1032, 1348
AsuHPI GGTGA 2 cut(s) 46, 588
AsuII TTCGAA 1 cut(s) 153
AvaII GGWCC 2 cut(s) 932, 1348
BaeGI GKGCMC 2 cut(s) 77, 318
BanI GGYRCC 1 cut(s) 1278
BanII GRGCYC 2 cut(s) 451, 545
BarI GAAGNNNNNNTAC 2 cut(s) 1200, 1232
BbsI GAAGAC 1 cut(s) 1086
Bbv12I GWGCWC 2 cut(s) 451, 545
BbvI GCAGC 3 cut(s) 490, 691, 967
BccI CCATC 2 cut(s) 1133, 1339
BciT130I CCWGG 1 cut(s) 590
BcoDI GTCTC 2 cut(s) 698, 801
BfaI CTAG 2 cut(s) 1019, 1256
BfmI CTRYAG 1 cut(s) 522
BisI GCNGC 4 cut(s) 6, 504, 705, 981
BlsI GCNGC 4 cut(s) 7, 505, 706, 982
Bme1390I CCNGG 1 cut(s) 590
Bme18I GGWCC 2 cut(s) 932, 1348
BmgBI CACGTC 1 cut(s) 72
BmgT120I GGNCC 3 cut(s) 932, 1032, 1348
BmiI GGNNCC 3 cut(s) 1033, 1280, 1324
BmrFI CCNGG 1 cut(s) 590
BmsI GCATC 6 cut(s) 156, 470, 849, 935, 992, 1082
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 1086
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 680
BsaJI CCNNGG 1 cut(s) 1065
BsaWI WCCGGW 1 cut(s) 1309
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 1205, 1235
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 2 cut(s) 1234, 1309
Bse1I ACTGG 6 cut(s) 356, 436, 559, 768, 935, 1088
Bse3DI GCAATG 3 cut(s) 350, 1100, 1185
Bse8I GATNNNNATC 1 cut(s) 379
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 1 cut(s) 1065
BseGI GGATG 4 cut(s) 172, 485, 532, 1144
BseJI GATNNNNATC 1 cut(s) 379
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 3 cut(s) 350, 1100, 1185
BseMII CTCAG 2 cut(s) 244, 591
BseNI ACTGG 6 cut(s) 356, 436, 559, 768, 935, 1088
BseRI GAGGAG 1 cut(s) 1315
BseSI GKGCMC 2 cut(s) 77, 318
BseXI GCAGC 3 cut(s) 490, 691, 967
BshFI GGCC 3 cut(s) 235, 881, 1034
BshNI GGYRCC 1 cut(s) 1278
BshTI ACCGGT 1 cut(s) 1309
BsiHKAI GWGCWC 2 cut(s) 451, 545
BsiSI CCGG 2 cut(s) 1235, 1310
BslFI GGGAC 2 cut(s) 171, 191
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 2 cut(s) 698, 801
BsmFI GGGAC 2 cut(s) 171, 191
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 3 cut(s) 235, 881, 1034
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 4 cut(s) 77, 318, 451, 545
Bsp143I GATC 7 cut(s) 202, 328, 374, 440, 529, 670, 760
BspACI CCGC 2 cut(s) 5, 492
BspANI GGCC 3 cut(s) 235, 881, 1034
BspCNI CTCAG 2 cut(s) 243, 592
BspLI GGNNCC 3 cut(s) 1033, 1280, 1324
BspPI GGATC 2 cut(s) 323, 755
BspT104I TTCGAA 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 1278
BsrDI GCAATG 3 cut(s) 350, 1100, 1185
BsrFI RCCGGY 2 cut(s) 1234, 1309
BsrI ACTGG 6 cut(s) 356, 436, 559, 768, 935, 1088
BssAI RCCGGY 2 cut(s) 1234, 1309
BssECI CCNNGG 1 cut(s) 1065
BssMI GATC 7 cut(s) 202, 328, 374, 440, 529, 670, 760
BssNI GRCGYC 1 cut(s) 680
BssT1I CCWWGG 1 cut(s) 1065
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 5 cut(s) 420, 692, 911, 1221, 1318
BstACI GRCGYC 1 cut(s) 680
BstAPI GCANNNNNTGC 2 cut(s) 72, 144
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 64, 750
BstDEI CTNAG 4 cut(s) 230, 600, 1193, 1264
BstF5I GGATG 4 cut(s) 172, 485, 532, 1144
BstHHI GCGC 1 cut(s) 957
BstKTI GATC 7 cut(s) 205, 331, 377, 443, 532, 673, 763
BstMAI GTCTC 2 cut(s) 698, 801
BstMBI GATC 7 cut(s) 202, 328, 374, 440, 529, 670, 760
BstMWI GCNNNNNNNGC 3 cut(s) 72, 144, 500
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 4 cut(s) 66, 752, 1029, 1122
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 588
BstSFI CTRYAG 1 cut(s) 522
BstSLI GKGCMC 2 cut(s) 77, 318
BstV1I GCAGC 3 cut(s) 490, 691, 967
BstV2I GAAGAC 1 cut(s) 1086
BsuRI GGCC 3 cut(s) 235, 881, 1034
BtrI CACGTC 1 cut(s) 72
BtsCI GGATG 4 cut(s) 172, 485, 532, 1144
BtsI GCAGTG 1 cut(s) 1204
BtsIMutI CAGTG 3 cut(s) 363, 942, 1204
Cac8I GCNNGC 2 cut(s) 64, 750
CfoI GCGC 1 cut(s) 957
Cfr10I RCCGGY 2 cut(s) 1234, 1309
Cfr13I GGNCC 3 cut(s) 932, 1032, 1348
CseI GACGC 1 cut(s) 688
Csp6I GTAC 3 cut(s) 399, 558, 1171
CspAI ACCGGT 1 cut(s) 1309
CspCI CAANNNNNGTGG 2 cut(s) 116, 151
CviAII CATG 7 cut(s) 63, 67, 749, 1026, 1119, 1248, 1380
CviQI GTAC 3 cut(s) 399, 558, 1171
DdeI CTNAG 4 cut(s) 230, 600, 1193, 1264
DpnI GATC 7 cut(s) 204, 330, 376, 442, 531, 672, 762
DpnII GATC 7 cut(s) 202, 328, 374, 440, 529, 670, 760
Ecl136II GAGCTC 2 cut(s) 449, 543
Eco130I CCWWGG 1 cut(s) 1065
Eco24I GRGCYC 2 cut(s) 451, 545
Eco32I GATATC 1 cut(s) 1113
Eco47I GGWCC 2 cut(s) 932, 1348
Eco53kI GAGCTC 2 cut(s) 449, 543
Eco57I CTGAAG 2 cut(s) 516, 1098
EcoICRI GAGCTC 2 cut(s) 449, 543
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 588
EcoRV GATATC 1 cut(s) 1113
EcoT14I CCWWGG 1 cut(s) 1065
EcoT22I ATGCAT 2 cut(s) 68, 853
EcoT38I GRGCYC 2 cut(s) 451, 545
ErhI CCWWGG 1 cut(s) 1065
FaeI CATG 7 cut(s) 66, 70, 752, 1029, 1122, 1251, 1383
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 2 cut(s) 171, 191
FatI CATG 7 cut(s) 62, 66, 748, 1025, 1118, 1247, 1379
FauNDI CATATG 1 cut(s) 610
Fnu4HI GCNGC 4 cut(s) 6, 504, 705, 981
FokI GGATG 4 cut(s) 179, 492, 519, 1151
FriOI GRGCYC 2 cut(s) 451, 545
Fsp4HI GCNGC 4 cut(s) 6, 504, 705, 981
FspAI RTGCGCAY 1 cut(s) 956
FspBI CTAG 2 cut(s) 1019, 1256
FspI TGCGCA 1 cut(s) 956
GlaI GCGC 1 cut(s) 956
GluI GCNGC 4 cut(s) 6, 504, 705, 981
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 3 cut(s) 235, 881, 1034
HapII CCGG 2 cut(s) 1235, 1310
HgaI GACGC 1 cut(s) 688
HhaI GCGC 1 cut(s) 957
Hin1I GRCGYC 1 cut(s) 680
Hin1II CATG 7 cut(s) 66, 70, 752, 1029, 1122, 1251, 1383
Hin6I GCGC 1 cut(s) 955
HinP1I GCGC 1 cut(s) 955
HinfI GANTC 4 cut(s) 518, 593, 992, 1259
HpaII CCGG 2 cut(s) 1235, 1310
HphI GGTGA 2 cut(s) 46, 588
Hpy166II GTNNAC 2 cut(s) 678, 785
Hpy188I TCNGA 5 cut(s) 166, 209, 760, 969, 1078
Hpy188III TCNNGA 8 cut(s) 332, 444, 456, 563, 833, 844, 930, 1165
Hpy8I GTNNAC 2 cut(s) 678, 785
HpyAV CCTTC 7 cut(s) 91, 167, 354, 361, 653, 806, 883
HpyCH4III ACNGT 5 cut(s) 420, 692, 911, 1221, 1318
HpyCH4IV ACGT 5 cut(s) 71, 131, 312, 645, 943
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 144, 500
HpyF3I CTNAG 4 cut(s) 230, 600, 1193, 1264
HpySE526I ACGT 5 cut(s) 71, 131, 312, 645, 943
Hsp92I GRCGYC 1 cut(s) 680
Hsp92II CATG 7 cut(s) 66, 70, 752, 1029, 1122, 1251, 1383
HspAI GCGC 1 cut(s) 955
Kzo9I GATC 7 cut(s) 202, 328, 374, 440, 529, 670, 760
LmnI GCTCC 2 cut(s) 548, 1328
Lsp1109I GCAGC 3 cut(s) 490, 691, 967
LweI GCATC 6 cut(s) 156, 470, 849, 935, 992, 1082
MaeI CTAG 2 cut(s) 1019, 1256
MaeII ACGT 5 cut(s) 71, 131, 312, 645, 943
MaeIII GTNAC 3 cut(s) 337, 911, 1312
MalI GATC 7 cut(s) 204, 330, 376, 442, 531, 672, 762
MboI GATC 7 cut(s) 202, 328, 374, 440, 529, 670, 760
MboII GAAGA 6 cut(s) 142, 339, 375, 509, 539, 1091
MhlI GDGCHC 4 cut(s) 77, 318, 451, 545
MluCI AATT 9 cut(s) 198, 210, 244, 569, 733, 801, 818, 1095, 1354
MmeI TCCRAC 3 cut(s) 570, 788, 1268
Mph1103I ATGCAT 2 cut(s) 68, 853
MseI TTAA 4 cut(s) 42, 279, 686, 804
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 2 cut(s) 1235, 1310
MspR9I CCNGG 1 cut(s) 590
Mva1269I GAATGC 1 cut(s) 853
MvaI CCWGG 1 cut(s) 590
MwoI GCNNNNNNNGC 3 cut(s) 72, 144, 500
NdeI CATATG 1 cut(s) 610
NdeII GATC 7 cut(s) 202, 328, 374, 440, 529, 670, 760
NlaIII CATG 7 cut(s) 66, 70, 752, 1029, 1122, 1251, 1383
NlaIV GGNNCC 3 cut(s) 1033, 1280, 1324
NsbI TGCGCA 1 cut(s) 956
NsiI ATGCAT 2 cut(s) 68, 853
NspI RCATGY 4 cut(s) 66, 752, 1029, 1122
NspV TTCGAA 1 cut(s) 153
PaeI GCATGC 2 cut(s) 66, 752
PciI ACATGT 1 cut(s) 1025
PctI GAATGC 1 cut(s) 853
PfeI GAWTC 4 cut(s) 518, 593, 992, 1259
PinAI ACCGGT 1 cut(s) 1309
PkrI GCNGC 4 cut(s) 7, 505, 706, 982
PscI ACATGT 1 cut(s) 1025
PshAI GACNNNNGTC 1 cut(s) 183
Psp124BI GAGCTC 2 cut(s) 451, 545
Psp6I CCWGG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 1033, 1280, 1324
PspPI GGNCC 3 cut(s) 932, 1032, 1348
RsaI GTAC 3 cut(s) 400, 559, 1172
RsaNI GTAC 3 cut(s) 399, 558, 1171
SacI GAGCTC 2 cut(s) 451, 545
SaqAI TTAA 4 cut(s) 42, 279, 686, 804
SatI GCNGC 4 cut(s) 6, 504, 705, 981
Sau3AI GATC 7 cut(s) 202, 328, 374, 440, 529, 670, 760
Sau96I GGNCC 3 cut(s) 932, 1032, 1348
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 4 cut(s) 77, 318, 451, 545
SfaNI GCATC 6 cut(s) 156, 470, 849, 935, 992, 1082
SfcI CTRYAG 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 153
SinI GGWCC 2 cut(s) 932, 1348
SphI GCATGC 2 cut(s) 66, 752
Sse9I AATT 9 cut(s) 198, 210, 244, 569, 733, 801, 818, 1095, 1354
SsiI CCGC 2 cut(s) 5, 492
SspMI CTAG 2 cut(s) 1019, 1256
SstI GAGCTC 2 cut(s) 451, 545
StyD4I CCNGG 1 cut(s) 588
StyI CCWWGG 1 cut(s) 1065
TaaI ACNGT 5 cut(s) 420, 692, 911, 1221, 1318
TaiI ACGT 5 cut(s) 74, 134, 315, 648, 946
TaqI TCGA 3 cut(s) 153, 222, 725
TasI AATT 9 cut(s) 198, 210, 244, 569, 733, 801, 818, 1095, 1354
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 518, 593, 992, 1259
Tru1I TTAA 4 cut(s) 42, 279, 686, 804
Tru9I TTAA 4 cut(s) 42, 279, 686, 804
TscAI CASTG 3 cut(s) 363, 942, 1204
TseI GCWGC 3 cut(s) 503, 704, 980
TspDTI ATGAA 8 cut(s) 339, 375, 582, 597, 650, 1089, 1196, 1221
TspGWI ACGGA 1 cut(s) 930
TspRI CASTG 3 cut(s) 363, 942, 1204
VpaK11BI GGWCC 2 cut(s) 932, 1348
XapI RAATTY 4 cut(s) 210, 569, 733, 1095
XceI RCATGY 4 cut(s) 66, 752, 1029, 1122
XspI CTAG 2 cut(s) 1019, 1256
Zsp2I ATGCAT 2 cut(s) 68, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.