pycom10g16540

E3 ubiquitin protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
19733251 .. 19736620
3370 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g16540.4

Sequence Viewer

Length: 1347 bp
ATGGCGAATCCGGTGGTGAGAGTGAGGAGGGAGACGATTGCAGCATGCATGACTTGTCCTCTCTGCGATAAGCTTTTCAGAGACGCCACCACCATATCTGAATGCCTTCACACGTTTTGCAGGAAGTGCATATATAATAAGATTTCAGACGAGGAACTGGAAGTCTGTCCAATATGCAACATAGACCTGGGTTGTGTTCCACTGGAGAAATTAAGGCCAGATCACAGCTTGCAAGATGTAAGGGCTAAGATTTTCCCTTTTAAAAGAAGAAAGGTTAGTGCACCTGAAGTAATGCCTTCAGTTACATTACCAGCAAGAAGAAAGGAGAGATCTCTCTCATCGTTGGTGGTCAACACTCCCAGAGTATCAACTCAAGCCACCATGACGGGAAGGAGAACTAAAGCTGTTGCGAGAAAGGCTTCTGCTTTACAGGCATCCAGTTTTTTGGTTGAGACACCTATTAAGAAAGAGGAAGGTTCTGCGGAAGATCACCTTGAGAGCAGCAGCTCACCTGAGGTCTCAAATAAGTCCGGTCAAAATAACAAGCAGAGTTCTTTTTCTGCTGAGACTAGGCAACCTGTATCCAATAAAGAAACTGAGAACGGCGGTGAACCATGGGAAGGGAAATTGGATCTCTGGAAACCGTTAAATTGTTTGGTTGAAGTTGCGAATAGGACCAAGTCTTTCAAATCCAACTCCCAAGGGTCTGAAAATAAAGTAGAACCGGTGCATGTCATTGCCAGTGAACCTCAGGTTCGCAAGTCCAAAAATAAGGAAAACAAACAGAAATCAAAAGTAGAGGGGGAAAAGAATAGTAATTATCCTACCTCTCCAGAAACAGTAAAACCTAAAAAGCTGCGTAGGATTCGACGAAAGAGGGAATCCTTTGGAGAATCAAGCATTTCACCCCAAGCTGTTCTGGATGCAGCCATTGGCAAACATGAAAGAAGAGCTGGTCCAATTTGGTTCTCACTCGTAGCTTCTGAAGATCAGGAAGGAGATGAACCCTTGCCTCAACTTCCGACGAGTTACTTGAGAATAAAAGATGGAAGTGTGCCAGTCTCGTTCATCCACAAATATCTAATGATGAAACTAGATCTCACTAGTGAAGCCGAGGTTGAAATCAAATGTATGGGGCAACCAGTGGTTCCCACATTAGAGATGTATAATTTAGTTGATCTGTGGCTACAAACGGCATCACCTTCAGAACGAATTACAGCATCCATCGGGTCCTCTGCAAAAGATTTTGTGATGGTGCTGGCTTATTCCCGAAAGCTGGCCACAGCAGGGTTAACGGGGACGAATGGACTACTGAAGAAACGCTCGCTCATCTTCCCCGTACGCTAG

Protein Analysis

449

Amino Acids

49.87

Weight (kDa)

9.39

Isoelectric Point (pI)

64.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 482, 606
AclWI GGATC 1 cut(s) 639
AcoI YGGCCR 1 cut(s) 1278
AcuI CTGAAG 5 cut(s) 282, 306, 1005, 1188, 1334
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 1341
AfiI CCNNNNNNNGG 3 cut(s) 620, 1276, 1287
AflIII ACRYGT 1 cut(s) 111
AgeI ACCGGT 1 cut(s) 724
AgsI TTSAA 3 cut(s) 662, 688, 1121
AhlI ACTAGT 1 cut(s) 1103
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 9 cut(s) 73, 228, 404, 507, 856, 914, 953, 980, 1276
AluI AGCT 9 cut(s) 73, 228, 404, 507, 856, 914, 953, 980, 1276
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 6 cut(s) 26, 75, 446, 523, 560, 1066
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 1 cut(s) 639
AoxI GGCC 2 cut(s) 215, 1278
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 5 cut(s) 41, 501, 504, 856, 926
AsiGI ACCGGT 1 cut(s) 724
Asp700I GAANNNNTTC 2 cut(s) 105, 418
AspS9I GGNCC 3 cut(s) 675, 956, 1230
AsuHPI GGTGA 6 cut(s) 28, 482, 501, 620, 897, 1191
AvaII GGWCC 3 cut(s) 675, 956, 1230
AxyI CCTNAGG 2 cut(s) 513, 750
BaeGI GKGCMC 1 cut(s) 283
BalI TGGCCA 1 cut(s) 1280
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 5 cut(s) 53, 513, 516, 843, 938
BccI CCATC 3 cut(s) 1040, 1232, 1246
BceAI ACGGC 2 cut(s) 619, 1209
BciT130I CCWGG 1 cut(s) 188
BciVI GTATCC 1 cut(s) 592
BcoDI GTCTC 6 cut(s) 26, 75, 446, 523, 560, 1066
BcuI ACTAGT 1 cut(s) 1103
BfaI CTAG 4 cut(s) 570, 1094, 1104, 1345
BfuI GTATCC 1 cut(s) 592
BglII AGATCT 2 cut(s) 329, 1096
BisI GCNGC 5 cut(s) 42, 502, 505, 857, 927
BlsI GCNGC 5 cut(s) 43, 503, 506, 858, 928
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 3 cut(s) 675, 956, 1230
BmgT120I GGNCC 3 cut(s) 675, 956, 1230
BmiI GGNNCC 2 cut(s) 1149, 1231
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 4 cut(s) 443, 913, 1205, 1229
BpmI CTGGAG 2 cut(s) 224, 816
BpuEI CTTGAG 3 cut(s) 357, 515, 1054
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 4 cut(s) 187, 614, 700, 1113
BsaWI WCCGGW 3 cut(s) 10, 530, 724
Bsc4I CCNNNNNNNGG 3 cut(s) 620, 1276, 1287
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 6 cut(s) 162, 207, 438, 741, 1058, 1142
Bse21I CCTNAGG 2 cut(s) 513, 750
Bse3DI GCAATG 1 cut(s) 735
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 4 cut(s) 187, 614, 700, 1113
BseGI GGATG 4 cut(s) 434, 928, 1068, 1220
BseLI CCNNNNNNNGG 3 cut(s) 620, 1276, 1287
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 4 cut(s) 504, 555, 588, 764
BseNI ACTGG 6 cut(s) 162, 207, 438, 741, 1058, 1142
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 5 cut(s) 53, 513, 516, 843, 938
BshFI GGCC 2 cut(s) 217, 1280
BshTI ACCGGT 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 3 cut(s) 11, 531, 725
BsiWI CGTACG 1 cut(s) 1339
BslFI GGGAC 1 cut(s) 1312
BslI CCNNNNNNNGG 3 cut(s) 620, 1276, 1287
BsmAI GTCTC 6 cut(s) 26, 75, 446, 523, 560, 1066
BsmBI CGTCTC 2 cut(s) 26, 75
BsmFI GGGAC 1 cut(s) 1312
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 2 cut(s) 217, 1280
Bso31I GGTCTC 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 7 cut(s) 220, 329, 487, 631, 988, 1096, 1177
Bsp19I CCATGG 1 cut(s) 614
BspACI CCGC 2 cut(s) 482, 606
BspANI GGCC 2 cut(s) 217, 1280
BspCNI CTCAG 4 cut(s) 505, 556, 589, 763
BspLI GGNNCC 2 cut(s) 1149, 1231
BspPI GGATC 1 cut(s) 639
BspQI GCTCTTC 1 cut(s) 943
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 735
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 6 cut(s) 162, 207, 438, 741, 1058, 1142
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 4 cut(s) 187, 614, 700, 1113
BssMI GATC 7 cut(s) 220, 329, 487, 631, 988, 1096, 1177
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 2 cut(s) 614, 700
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 645, 841
Bst6I CTCTTC 1 cut(s) 943
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 126
BstC8I GCNNGC 5 cut(s) 46, 230, 1260, 1278, 1325
BstDEI CTNAG 5 cut(s) 246, 513, 564, 597, 750
BstDSI CCRYGG 1 cut(s) 614
BstF5I GGATG 4 cut(s) 434, 928, 1068, 1220
BstKTI GATC 7 cut(s) 223, 332, 490, 634, 991, 1099, 1180
BstMAI GTCTC 6 cut(s) 26, 75, 446, 523, 560, 1066
BstMBI GATC 7 cut(s) 220, 329, 487, 631, 988, 1096, 1177
BstMWI GCNNNNNNNGC 3 cut(s) 126, 416, 431
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 2 cut(s) 48, 734
BstSCI CCNGG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 5 cut(s) 53, 513, 516, 843, 938
BstX2I RGATCY 3 cut(s) 329, 631, 1096
BstXI CCANNNNNNTGG 1 cut(s) 445
BstYI RGATCY 3 cut(s) 329, 631, 1096
Bsu36I CCTNAGG 2 cut(s) 513, 750
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 217, 1280
BtgI CCRYGG 1 cut(s) 614
BtsCI GGATG 4 cut(s) 434, 928, 1068, 1220
BtsIMutI CAGTG 3 cut(s) 200, 748, 1149
Cac8I GCNNGC 5 cut(s) 46, 230, 1260, 1278, 1325
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 3 cut(s) 675, 956, 1230
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 1340
CspAI ACCGGT 1 cut(s) 724
CviAII CATG 6 cut(s) 45, 49, 382, 615, 731, 941
CviQI GTAC 1 cut(s) 1340
DdeI CTNAG 5 cut(s) 246, 513, 564, 597, 750
DpnI GATC 7 cut(s) 222, 331, 489, 633, 990, 1098, 1179
DpnII GATC 7 cut(s) 220, 329, 487, 631, 988, 1096, 1177
DraI TTTAAA 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 1278
Eam1104I CTCTTC 1 cut(s) 943
EarI CTCTTC 1 cut(s) 943
Eco130I CCWWGG 2 cut(s) 614, 700
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 3 cut(s) 675, 956, 1230
Eco57I CTGAAG 5 cut(s) 282, 306, 1005, 1188, 1334
Eco81I CCTNAGG 2 cut(s) 513, 750
EcoO109I RGGNCCY 1 cut(s) 1230
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 614, 700
EcoT22I ATGCAT 1 cut(s) 50
ErhI CCWWGG 2 cut(s) 614, 700
Esp3I CGTCTC 2 cut(s) 26, 75
FaeI CATG 6 cut(s) 48, 52, 385, 618, 734, 944
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 1 cut(s) 1312
FatI CATG 6 cut(s) 44, 48, 381, 614, 730, 940
Fnu4HI GCNGC 5 cut(s) 42, 502, 505, 857, 927
FokI GGATG 4 cut(s) 421, 935, 1055, 1207
Fsp4HI GCNGC 5 cut(s) 42, 502, 505, 857, 927
FspBI CTAG 4 cut(s) 570, 1094, 1104, 1345
GluI GCNGC 5 cut(s) 42, 502, 505, 857, 927
GsuI CTGGAG 2 cut(s) 224, 816
HaeIII GGCC 2 cut(s) 217, 1280
HapII CCGG 3 cut(s) 11, 531, 725
HgaI GACGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 6 cut(s) 48, 52, 385, 618, 734, 944
HincII GTYRAC 2 cut(s) 352, 1293
HindII GTYRAC 2 cut(s) 352, 1293
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 4 cut(s) 7, 865, 881, 893
HpaI GTTAAC 1 cut(s) 1293
HpaII CCGG 3 cut(s) 11, 531, 725
HphI GGTGA 6 cut(s) 28, 482, 501, 620, 897, 1191
Hpy166II GTNNAC 5 cut(s) 281, 352, 611, 746, 1293
Hpy188I TCNGA 7 cut(s) 80, 100, 148, 709, 985, 1023, 1207
Hpy188III TCNNGA 5 cut(s) 637, 833, 920, 992, 1269
Hpy8I GTNNAC 5 cut(s) 281, 352, 611, 746, 1293
Hpy99I CGWCG 2 cut(s) 873, 1027
HpyAV CCTTC 7 cut(s) 116, 306, 384, 467, 614, 989, 1212
HpyCH4III ACNGT 2 cut(s) 645, 841
HpyCH4IV ACGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 416, 431
HpyF3I CTNAG 5 cut(s) 246, 513, 564, 597, 750
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 6 cut(s) 48, 52, 385, 618, 734, 944
KspAI GTTAAC 1 cut(s) 1293
Kzo9I GATC 7 cut(s) 220, 329, 487, 631, 988, 1096, 1177
LguI GCTCTTC 1 cut(s) 943
Lsp1109I GCAGC 5 cut(s) 53, 513, 516, 843, 938
LweI GCATC 4 cut(s) 443, 913, 1205, 1229
MaeI CTAG 4 cut(s) 570, 1094, 1104, 1345
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 301, 1028
MalI GATC 7 cut(s) 222, 331, 489, 633, 990, 1098, 1179
MboI GATC 7 cut(s) 220, 329, 487, 631, 988, 1096, 1177
MboII GAAGA 7 cut(s) 279, 330, 497, 960, 998, 1324, 1327
MflI RGATCY 3 cut(s) 329, 631, 1096
MhlI GDGCHC 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 1280
MluCI AATT 7 cut(s) 209, 626, 649, 817, 960, 1168, 1212
MluNI TGGCCA 1 cut(s) 1280
MmeI TCCRAC 2 cut(s) 717, 1046
Mox20I TGGCCA 1 cut(s) 1280
Mph1103I ATGCAT 1 cut(s) 50
MroXI GAANNNNTTC 2 cut(s) 105, 418
MscI TGGCCA 1 cut(s) 1280
MseI TTAA 5 cut(s) 212, 261, 462, 647, 1292
Msp20I TGGCCA 1 cut(s) 1280
MspI CCGG 3 cut(s) 11, 531, 725
MspR9I CCNGG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 3 cut(s) 126, 416, 431
NcoI CCATGG 1 cut(s) 614
NdeII GATC 7 cut(s) 220, 329, 487, 631, 988, 1096, 1177
NlaIII CATG 6 cut(s) 48, 52, 385, 618, 734, 944
NlaIV GGNNCC 2 cut(s) 1149, 1231
NmeAIII GCCGAG 1 cut(s) 1138
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 2 cut(s) 48, 734
PaeI GCATGC 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 943
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 2 cut(s) 105, 418
PfeI GAWTC 4 cut(s) 7, 865, 881, 893
Pfl23II CGTACG 1 cut(s) 1339
PflFI GACNNNGTC 1 cut(s) 679
PinAI ACCGGT 1 cut(s) 724
PkrI GCNGC 5 cut(s) 43, 503, 506, 858, 928
PpuMI RGGWCCY 1 cut(s) 1230
Psp5II RGGWCCY 1 cut(s) 1230
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspLI CGTACG 1 cut(s) 1339
PspN4I GGNNCC 2 cut(s) 1149, 1231
PspPI GGNCC 3 cut(s) 675, 956, 1230
PspPPI RGGWCCY 1 cut(s) 1230
PsuI RGATCY 3 cut(s) 329, 631, 1096
PsyI GACNNNGTC 1 cut(s) 679
RsaI GTAC 1 cut(s) 1341
RsaNI GTAC 1 cut(s) 1340
SapI GCTCTTC 1 cut(s) 943
SaqAI TTAA 5 cut(s) 212, 261, 462, 647, 1292
SatI GCNGC 5 cut(s) 42, 502, 505, 857, 927
Sau3AI GATC 7 cut(s) 220, 329, 487, 631, 988, 1096, 1177
Sau96I GGNCC 3 cut(s) 675, 956, 1230
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 283
SfaNI GCATC 4 cut(s) 443, 913, 1205, 1229
SinI GGWCC 3 cut(s) 675, 956, 1230
SmlI CTYRAG 3 cut(s) 372, 494, 1033
SmoI CTYRAG 3 cut(s) 372, 494, 1033
SpeI ACTAGT 1 cut(s) 1103
SphI GCATGC 1 cut(s) 48
Sse9I AATT 7 cut(s) 209, 626, 649, 817, 960, 1168, 1212
SsiI CCGC 2 cut(s) 482, 606
SspMI CTAG 4 cut(s) 570, 1094, 1104, 1345
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 2 cut(s) 614, 700
TaaI ACNGT 2 cut(s) 645, 841
TaiI ACGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 868
TasI AATT 7 cut(s) 209, 626, 649, 817, 960, 1168, 1212
TfiI GAWTC 4 cut(s) 7, 865, 881, 893
Tru1I TTAA 5 cut(s) 212, 261, 462, 647, 1292
Tru9I TTAA 5 cut(s) 212, 261, 462, 647, 1292
TscAI CASTG 3 cut(s) 207, 748, 1149
TseI GCWGC 5 cut(s) 41, 501, 504, 856, 926
TspDTI ATGAA 4 cut(s) 957, 1017, 1057, 1103
TspRI CASTG 3 cut(s) 207, 748, 1149
Tth111I GACNNNGTC 1 cut(s) 679
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 3 cut(s) 675, 956, 1230
XceI RCATGY 2 cut(s) 48, 734
XmnI GAANNNNTTC 2 cut(s) 105, 418
XspI CTAG 4 cut(s) 570, 1094, 1104, 1345
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.