E3 ubiquitin protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580 |
| fragaria_vesca | FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710 |
| malus_domestica | MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1 |
| prunus_persica | Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1 |
| pyrus_communis | pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160 |
| rosa_chinensis | RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351 |
| rosa_laevigata | RLG00000012310 RLG00000025707 |
| rosa_multiflora | Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00428390 Rroxscaffold_7G00179330 |
| rosa_rugosa | Rorug02G0629900 Rorug02G0630000 Rorug06G0202900 |
| rosa_samantha | Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200 |
| rosa_wichuraiana | Rw3G002380 Rw6G027130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 482, 606 |
| AclWI | GGATC | 1 cut(s) | 639 |
| AcoI | YGGCCR | 1 cut(s) | 1278 |
| AcuI | CTGAAG | 5 cut(s) | 282, 306, 1005, 1188, 1334 |
| AcyI | GRCGYC | 1 cut(s) | 84 |
| AfaI | GTAC | 1 cut(s) | 1341 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 620, 1276, 1287 |
| AflIII | ACRYGT | 1 cut(s) | 111 |
| AgeI | ACCGGT | 1 cut(s) | 724 |
| AgsI | TTSAA | 3 cut(s) | 662, 688, 1121 |
| AhlI | ACTAGT | 1 cut(s) | 1103 |
| AjnI | CCWGG | 1 cut(s) | 186 |
| AluBI | AGCT | 9 cut(s) | 73, 228, 404, 507, 856, 914, 953, 980, 1276 |
| AluI | AGCT | 9 cut(s) | 73, 228, 404, 507, 856, 914, 953, 980, 1276 |
| Alw21I | GWGCWC | 1 cut(s) | 283 |
| Alw26I | GTCTC | 6 cut(s) | 26, 75, 446, 523, 560, 1066 |
| Alw44I | GTGCAC | 1 cut(s) | 279 |
| AlwI | GGATC | 1 cut(s) | 639 |
| AoxI | GGCC | 2 cut(s) | 215, 1278 |
| ApaLI | GTGCAC | 1 cut(s) | 279 |
| ApeKI | GCWGC | 5 cut(s) | 41, 501, 504, 856, 926 |
| AsiGI | ACCGGT | 1 cut(s) | 724 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 105, 418 |
| AspS9I | GGNCC | 3 cut(s) | 675, 956, 1230 |
| AsuHPI | GGTGA | 6 cut(s) | 28, 482, 501, 620, 897, 1191 |
| AvaII | GGWCC | 3 cut(s) | 675, 956, 1230 |
| AxyI | CCTNAGG | 2 cut(s) | 513, 750 |
| BaeGI | GKGCMC | 1 cut(s) | 283 |
| BalI | TGGCCA | 1 cut(s) | 1280 |
| Bbv12I | GWGCWC | 1 cut(s) | 283 |
| BbvI | GCAGC | 5 cut(s) | 53, 513, 516, 843, 938 |
| BccI | CCATC | 3 cut(s) | 1040, 1232, 1246 |
| BceAI | ACGGC | 2 cut(s) | 619, 1209 |
| BciT130I | CCWGG | 1 cut(s) | 188 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BcoDI | GTCTC | 6 cut(s) | 26, 75, 446, 523, 560, 1066 |
| BcuI | ACTAGT | 1 cut(s) | 1103 |
| BfaI | CTAG | 4 cut(s) | 570, 1094, 1104, 1345 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BglII | AGATCT | 2 cut(s) | 329, 1096 |
| BisI | GCNGC | 5 cut(s) | 42, 502, 505, 857, 927 |
| BlsI | GCNGC | 5 cut(s) | 43, 503, 506, 858, 928 |
| Bme1390I | CCNGG | 1 cut(s) | 188 |
| Bme18I | GGWCC | 3 cut(s) | 675, 956, 1230 |
| BmgT120I | GGNCC | 3 cut(s) | 675, 956, 1230 |
| BmiI | GGNNCC | 2 cut(s) | 1149, 1231 |
| BmrFI | CCNGG | 1 cut(s) | 188 |
| BmsI | GCATC | 4 cut(s) | 443, 913, 1205, 1229 |
| BpmI | CTGGAG | 2 cut(s) | 224, 816 |
| BpuEI | CTTGAG | 3 cut(s) | 357, 515, 1054 |
| BsaHI | GRCGYC | 1 cut(s) | 84 |
| BsaI | GGTCTC | 1 cut(s) | 523 |
| BsaJI | CCNNGG | 4 cut(s) | 187, 614, 700, 1113 |
| BsaWI | WCCGGW | 3 cut(s) | 10, 530, 724 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 620, 1276, 1287 |
| Bse118I | RCCGGY | 1 cut(s) | 724 |
| Bse1I | ACTGG | 6 cut(s) | 162, 207, 438, 741, 1058, 1142 |
| Bse21I | CCTNAGG | 2 cut(s) | 513, 750 |
| Bse3DI | GCAATG | 1 cut(s) | 735 |
| BseBI | CCWGG | 1 cut(s) | 188 |
| BseDI | CCNNGG | 4 cut(s) | 187, 614, 700, 1113 |
| BseGI | GGATG | 4 cut(s) | 434, 928, 1068, 1220 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 620, 1276, 1287 |
| BseMI | GCAATG | 1 cut(s) | 735 |
| BseMII | CTCAG | 4 cut(s) | 504, 555, 588, 764 |
| BseNI | ACTGG | 6 cut(s) | 162, 207, 438, 741, 1058, 1142 |
| BseRI | GAGGAG | 1 cut(s) | 40 |
| BseSI | GKGCMC | 1 cut(s) | 283 |
| BseXI | GCAGC | 5 cut(s) | 53, 513, 516, 843, 938 |
| BshFI | GGCC | 2 cut(s) | 217, 1280 |
| BshTI | ACCGGT | 1 cut(s) | 724 |
| BsiHKAI | GWGCWC | 1 cut(s) | 283 |
| BsiSI | CCGG | 3 cut(s) | 11, 531, 725 |
| BsiWI | CGTACG | 1 cut(s) | 1339 |
| BslFI | GGGAC | 1 cut(s) | 1312 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 620, 1276, 1287 |
| BsmAI | GTCTC | 6 cut(s) | 26, 75, 446, 523, 560, 1066 |
| BsmBI | CGTCTC | 2 cut(s) | 26, 75 |
| BsmFI | GGGAC | 1 cut(s) | 1312 |
| BsmI | GAATGC | 1 cut(s) | 107 |
| BsnI | GGCC | 2 cut(s) | 217, 1280 |
| Bso31I | GGTCTC | 1 cut(s) | 523 |
| Bsp1286I | GDGCHC | 1 cut(s) | 283 |
| Bsp143I | GATC | 7 cut(s) | 220, 329, 487, 631, 988, 1096, 1177 |
| Bsp19I | CCATGG | 1 cut(s) | 614 |
| BspACI | CCGC | 2 cut(s) | 482, 606 |
| BspANI | GGCC | 2 cut(s) | 217, 1280 |
| BspCNI | CTCAG | 4 cut(s) | 505, 556, 589, 763 |
| BspLI | GGNNCC | 2 cut(s) | 1149, 1231 |
| BspPI | GGATC | 1 cut(s) | 639 |
| BspQI | GCTCTTC | 1 cut(s) | 943 |
| BspTNI | GGTCTC | 1 cut(s) | 523 |
| BsrDI | GCAATG | 1 cut(s) | 735 |
| BsrFI | RCCGGY | 1 cut(s) | 724 |
| BsrI | ACTGG | 6 cut(s) | 162, 207, 438, 741, 1058, 1142 |
| BssAI | RCCGGY | 1 cut(s) | 724 |
| BssECI | CCNNGG | 4 cut(s) | 187, 614, 700, 1113 |
| BssMI | GATC | 7 cut(s) | 220, 329, 487, 631, 988, 1096, 1177 |
| BssNI | GRCGYC | 1 cut(s) | 84 |
| BssT1I | CCWWGG | 2 cut(s) | 614, 700 |
| Bst2UI | CCWGG | 1 cut(s) | 188 |
| Bst4CI | ACNGT | 2 cut(s) | 645, 841 |
| Bst6I | CTCTTC | 1 cut(s) | 943 |
| BstACI | GRCGYC | 1 cut(s) | 84 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 5 cut(s) | 46, 230, 1260, 1278, 1325 |
| BstDEI | CTNAG | 5 cut(s) | 246, 513, 564, 597, 750 |
| BstDSI | CCRYGG | 1 cut(s) | 614 |
| BstF5I | GGATG | 4 cut(s) | 434, 928, 1068, 1220 |
| BstKTI | GATC | 7 cut(s) | 223, 332, 490, 634, 991, 1099, 1180 |
| BstMAI | GTCTC | 6 cut(s) | 26, 75, 446, 523, 560, 1066 |
| BstMBI | GATC | 7 cut(s) | 220, 329, 487, 631, 988, 1096, 1177 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 126, 416, 431 |
| BstNI | CCWGG | 1 cut(s) | 188 |
| BstNSI | RCATGY | 2 cut(s) | 48, 734 |
| BstSCI | CCNGG | 1 cut(s) | 186 |
| BstSLI | GKGCMC | 1 cut(s) | 283 |
| BstV1I | GCAGC | 5 cut(s) | 53, 513, 516, 843, 938 |
| BstX2I | RGATCY | 3 cut(s) | 329, 631, 1096 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 445 |
| BstYI | RGATCY | 3 cut(s) | 329, 631, 1096 |
| Bsu36I | CCTNAGG | 2 cut(s) | 513, 750 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 2 cut(s) | 217, 1280 |
| BtgI | CCRYGG | 1 cut(s) | 614 |
| BtsCI | GGATG | 4 cut(s) | 434, 928, 1068, 1220 |
| BtsIMutI | CAGTG | 3 cut(s) | 200, 748, 1149 |
| Cac8I | GCNNGC | 5 cut(s) | 46, 230, 1260, 1278, 1325 |
| Cfr10I | RCCGGY | 1 cut(s) | 724 |
| Cfr13I | GGNCC | 3 cut(s) | 675, 956, 1230 |
| CseI | GACGC | 1 cut(s) | 92 |
| Csp6I | GTAC | 1 cut(s) | 1340 |
| CspAI | ACCGGT | 1 cut(s) | 724 |
| CviAII | CATG | 6 cut(s) | 45, 49, 382, 615, 731, 941 |
| CviQI | GTAC | 1 cut(s) | 1340 |
| DdeI | CTNAG | 5 cut(s) | 246, 513, 564, 597, 750 |
| DpnI | GATC | 7 cut(s) | 222, 331, 489, 633, 990, 1098, 1179 |
| DpnII | GATC | 7 cut(s) | 220, 329, 487, 631, 988, 1096, 1177 |
| DraI | TTTAAA | 1 cut(s) | 262 |
| EaeI | YGGCCR | 1 cut(s) | 1278 |
| Eam1104I | CTCTTC | 1 cut(s) | 943 |
| EarI | CTCTTC | 1 cut(s) | 943 |
| Eco130I | CCWWGG | 2 cut(s) | 614, 700 |
| Eco31I | GGTCTC | 1 cut(s) | 523 |
| Eco47I | GGWCC | 3 cut(s) | 675, 956, 1230 |
| Eco57I | CTGAAG | 5 cut(s) | 282, 306, 1005, 1188, 1334 |
| Eco81I | CCTNAGG | 2 cut(s) | 513, 750 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1230 |
| EcoRII | CCWGG | 1 cut(s) | 186 |
| EcoT14I | CCWWGG | 2 cut(s) | 614, 700 |
| EcoT22I | ATGCAT | 1 cut(s) | 50 |
| ErhI | CCWWGG | 2 cut(s) | 614, 700 |
| Esp3I | CGTCTC | 2 cut(s) | 26, 75 |
| FaeI | CATG | 6 cut(s) | 48, 52, 385, 618, 734, 944 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 477, 509 |
| FaqI | GGGAC | 1 cut(s) | 1312 |
| FatI | CATG | 6 cut(s) | 44, 48, 381, 614, 730, 940 |
| Fnu4HI | GCNGC | 5 cut(s) | 42, 502, 505, 857, 927 |
| FokI | GGATG | 4 cut(s) | 421, 935, 1055, 1207 |
| Fsp4HI | GCNGC | 5 cut(s) | 42, 502, 505, 857, 927 |
| FspBI | CTAG | 4 cut(s) | 570, 1094, 1104, 1345 |
| GluI | GCNGC | 5 cut(s) | 42, 502, 505, 857, 927 |
| GsuI | CTGGAG | 2 cut(s) | 224, 816 |
| HaeIII | GGCC | 2 cut(s) | 217, 1280 |
| HapII | CCGG | 3 cut(s) | 11, 531, 725 |
| HgaI | GACGC | 1 cut(s) | 92 |
| Hin1I | GRCGYC | 1 cut(s) | 84 |
| Hin1II | CATG | 6 cut(s) | 48, 52, 385, 618, 734, 944 |
| HincII | GTYRAC | 2 cut(s) | 352, 1293 |
| HindII | GTYRAC | 2 cut(s) | 352, 1293 |
| HindIII | AAGCTT | 1 cut(s) | 71 |
| HinfI | GANTC | 4 cut(s) | 7, 865, 881, 893 |
| HpaI | GTTAAC | 1 cut(s) | 1293 |
| HpaII | CCGG | 3 cut(s) | 11, 531, 725 |
| HphI | GGTGA | 6 cut(s) | 28, 482, 501, 620, 897, 1191 |
| Hpy166II | GTNNAC | 5 cut(s) | 281, 352, 611, 746, 1293 |
| Hpy188I | TCNGA | 7 cut(s) | 80, 100, 148, 709, 985, 1023, 1207 |
| Hpy188III | TCNNGA | 5 cut(s) | 637, 833, 920, 992, 1269 |
| Hpy8I | GTNNAC | 5 cut(s) | 281, 352, 611, 746, 1293 |
| Hpy99I | CGWCG | 2 cut(s) | 873, 1027 |
| HpyAV | CCTTC | 7 cut(s) | 116, 306, 384, 467, 614, 989, 1212 |
| HpyCH4III | ACNGT | 2 cut(s) | 645, 841 |
| HpyCH4IV | ACGT | 1 cut(s) | 113 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 126, 416, 431 |
| HpyF3I | CTNAG | 5 cut(s) | 246, 513, 564, 597, 750 |
| HpySE526I | ACGT | 1 cut(s) | 113 |
| Hsp92I | GRCGYC | 1 cut(s) | 84 |
| Hsp92II | CATG | 6 cut(s) | 48, 52, 385, 618, 734, 944 |
| KspAI | GTTAAC | 1 cut(s) | 1293 |
| Kzo9I | GATC | 7 cut(s) | 220, 329, 487, 631, 988, 1096, 1177 |
| LguI | GCTCTTC | 1 cut(s) | 943 |
| Lsp1109I | GCAGC | 5 cut(s) | 53, 513, 516, 843, 938 |
| LweI | GCATC | 4 cut(s) | 443, 913, 1205, 1229 |
| MaeI | CTAG | 4 cut(s) | 570, 1094, 1104, 1345 |
| MaeII | ACGT | 1 cut(s) | 113 |
| MaeIII | GTNAC | 2 cut(s) | 301, 1028 |
| MalI | GATC | 7 cut(s) | 222, 331, 489, 633, 990, 1098, 1179 |
| MboI | GATC | 7 cut(s) | 220, 329, 487, 631, 988, 1096, 1177 |
| MboII | GAAGA | 7 cut(s) | 279, 330, 497, 960, 998, 1324, 1327 |
| MflI | RGATCY | 3 cut(s) | 329, 631, 1096 |
| MhlI | GDGCHC | 1 cut(s) | 283 |
| MlsI | TGGCCA | 1 cut(s) | 1280 |
| MluCI | AATT | 7 cut(s) | 209, 626, 649, 817, 960, 1168, 1212 |
| MluNI | TGGCCA | 1 cut(s) | 1280 |
| MmeI | TCCRAC | 2 cut(s) | 717, 1046 |
| Mox20I | TGGCCA | 1 cut(s) | 1280 |
| Mph1103I | ATGCAT | 1 cut(s) | 50 |
| MroXI | GAANNNNTTC | 2 cut(s) | 105, 418 |
| MscI | TGGCCA | 1 cut(s) | 1280 |
| MseI | TTAA | 5 cut(s) | 212, 261, 462, 647, 1292 |
| Msp20I | TGGCCA | 1 cut(s) | 1280 |
| MspI | CCGG | 3 cut(s) | 11, 531, 725 |
| MspR9I | CCNGG | 1 cut(s) | 188 |
| Mva1269I | GAATGC | 1 cut(s) | 107 |
| MvaI | CCWGG | 1 cut(s) | 188 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 126, 416, 431 |
| NcoI | CCATGG | 1 cut(s) | 614 |
| NdeII | GATC | 7 cut(s) | 220, 329, 487, 631, 988, 1096, 1177 |
| NlaIII | CATG | 6 cut(s) | 48, 52, 385, 618, 734, 944 |
| NlaIV | GGNNCC | 2 cut(s) | 1149, 1231 |
| NmeAIII | GCCGAG | 1 cut(s) | 1138 |
| NsiI | ATGCAT | 1 cut(s) | 50 |
| NspI | RCATGY | 2 cut(s) | 48, 734 |
| PaeI | GCATGC | 1 cut(s) | 48 |
| PciSI | GCTCTTC | 1 cut(s) | 943 |
| PctI | GAATGC | 1 cut(s) | 107 |
| PdmI | GAANNNNTTC | 2 cut(s) | 105, 418 |
| PfeI | GAWTC | 4 cut(s) | 7, 865, 881, 893 |
| Pfl23II | CGTACG | 1 cut(s) | 1339 |
| PflFI | GACNNNGTC | 1 cut(s) | 679 |
| PinAI | ACCGGT | 1 cut(s) | 724 |
| PkrI | GCNGC | 5 cut(s) | 43, 503, 506, 858, 928 |
| PpuMI | RGGWCCY | 1 cut(s) | 1230 |
| Psp5II | RGGWCCY | 1 cut(s) | 1230 |
| Psp6I | CCWGG | 1 cut(s) | 186 |
| PspGI | CCWGG | 1 cut(s) | 186 |
| PspLI | CGTACG | 1 cut(s) | 1339 |
| PspN4I | GGNNCC | 2 cut(s) | 1149, 1231 |
| PspPI | GGNCC | 3 cut(s) | 675, 956, 1230 |
| PspPPI | RGGWCCY | 1 cut(s) | 1230 |
| PsuI | RGATCY | 3 cut(s) | 329, 631, 1096 |
| PsyI | GACNNNGTC | 1 cut(s) | 679 |
| RsaI | GTAC | 1 cut(s) | 1341 |
| RsaNI | GTAC | 1 cut(s) | 1340 |
| SapI | GCTCTTC | 1 cut(s) | 943 |
| SaqAI | TTAA | 5 cut(s) | 212, 261, 462, 647, 1292 |
| SatI | GCNGC | 5 cut(s) | 42, 502, 505, 857, 927 |
| Sau3AI | GATC | 7 cut(s) | 220, 329, 487, 631, 988, 1096, 1177 |
| Sau96I | GGNCC | 3 cut(s) | 675, 956, 1230 |
| ScrFI | CCNGG | 1 cut(s) | 188 |
| SduI | GDGCHC | 1 cut(s) | 283 |
| SfaNI | GCATC | 4 cut(s) | 443, 913, 1205, 1229 |
| SinI | GGWCC | 3 cut(s) | 675, 956, 1230 |
| SmlI | CTYRAG | 3 cut(s) | 372, 494, 1033 |
| SmoI | CTYRAG | 3 cut(s) | 372, 494, 1033 |
| SpeI | ACTAGT | 1 cut(s) | 1103 |
| SphI | GCATGC | 1 cut(s) | 48 |
| Sse9I | AATT | 7 cut(s) | 209, 626, 649, 817, 960, 1168, 1212 |
| SsiI | CCGC | 2 cut(s) | 482, 606 |
| SspMI | CTAG | 4 cut(s) | 570, 1094, 1104, 1345 |
| StyD4I | CCNGG | 1 cut(s) | 186 |
| StyI | CCWWGG | 2 cut(s) | 614, 700 |
| TaaI | ACNGT | 2 cut(s) | 645, 841 |
| TaiI | ACGT | 1 cut(s) | 116 |
| TaqI | TCGA | 1 cut(s) | 868 |
| TasI | AATT | 7 cut(s) | 209, 626, 649, 817, 960, 1168, 1212 |
| TfiI | GAWTC | 4 cut(s) | 7, 865, 881, 893 |
| Tru1I | TTAA | 5 cut(s) | 212, 261, 462, 647, 1292 |
| Tru9I | TTAA | 5 cut(s) | 212, 261, 462, 647, 1292 |
| TscAI | CASTG | 3 cut(s) | 207, 748, 1149 |
| TseI | GCWGC | 5 cut(s) | 41, 501, 504, 856, 926 |
| TspDTI | ATGAA | 4 cut(s) | 957, 1017, 1057, 1103 |
| TspRI | CASTG | 3 cut(s) | 207, 748, 1149 |
| Tth111I | GACNNNGTC | 1 cut(s) | 679 |
| VneI | GTGCAC | 1 cut(s) | 279 |
| VpaK11BI | GGWCC | 3 cut(s) | 675, 956, 1230 |
| XceI | RCATGY | 2 cut(s) | 48, 734 |
| XmnI | GAANNNNTTC | 2 cut(s) | 105, 418 |
| XspI | CTAG | 4 cut(s) | 570, 1094, 1104, 1345 |
| Zsp2I | ATGCAT | 1 cut(s) | 50 |