MD05G1204700.v1.1

E3 ubiquitin protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
33423660 .. 33427739
4080 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1204700.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGGCGAATCCGGTGGTGAGAGTGAGGAGGGAGACGATTGCGGCATGCATGACTTGTCCTCTTTGCGATAAGCTCTTCAGAGACGCCACCACCATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATATATAATAAGATTTCAGACGAGGAACTAGAAGTCTGTCCAATATGCAACATAGACCTGGGTTGTGTTCCACTGGAGAAATTAAGGCCAGATCACAGCTGGCAAGATGTAAGGGCTAAGATTTTCCCTTTTAAAAGAAGAAAGGTAAGTGCACCTGAAGTTATGCCTTCAGTTACATTACCAGCTAGAAGAAAGGAGAGATCTCTCTCGTCGTTGGTGGTCAGCACTCCCAGAGTATCAGCCCAGGCTACCATGACGGGAAGGAGAACTAAAGCTGTTGCAAGAAAGGCTTCTGCTTTACAAGCATCCAGTTTTTTGGTTGAGAGGCCTATTAAGAAAGAGGAAAGTTCAGCAGAAGATCACCTAGAGAGCAACAGCTCACCTGAAGCCTCAAATAAGTCCGGTCAAAATAACAAGCCGAGTTCTTTTTCTGCTGAGCCTAGCCAGCCTGTATCCAATAAAGAAACTGAGGATGGCGGTGAACCATGGGAAGGGAAATTGGATCTTTGGAAACCATTAAATTGTTTGGTCGAAGTTGCGAATAGGACCAAGTCGCTCAAATCCAACTCCCAAGGGTCTGAAAATAAAGTAGAACCAGTGCATGTAAGTGAACCTCAGGTTCGCAAGTCCAAAAATAAGGAAAACAAAGAGAAATCAAAAGTTGAGGAGGAAAAGAATAGTACTTATCCTACCTCTCCAGACACAGTAAAACCTAAAAAGCTGCGTAGGGTTCGACGAAAGAGGGAATCATTTGCAGAATCAAGCATTTCACCCCAAGCTGTTTTGGATGCAACTTTTGGCAAACATGAACGAAGAGCCGGTCCAATTTGGTTCTCACTCGTAGCTTCTGAAGACCAGGAAGGAGATGAACCCTTGCCTCAAATTCCGACAAGTTACTTAAGGATAAAGGATGGGAACGTGCCTGTCTCGTTCATCCAGAAATACCTAATGAGGAAACTAGACCTCACTAGCGAAGCTGAGGTTGAGATTAAATGTATGGGGCAACCAGTGGTTCCCACGTTAGAAATGTATAACTTAGTTGATCTGTGGCTACAAATGGCATCCCCTCCAGAACGAATTACAGCATCTGTCGGGTCCTCTGCGAAAGATTTTGTGATGGTGCTGGCTTATTCCCGAAAGGTCTCAAACTCCTAA

Protein Analysis

428

Amino Acids

47.81

Weight (kDa)

9.1

Isoelectric Point (pI)

65.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 19 - 59 1.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 19 - 59 4.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 19 - 52 1.2e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 41, 606
AclWI GGATC 1 cut(s) 639
AcsI RAATTY 1 cut(s) 1011
AcuI CTGAAG 5 cut(s) 61, 282, 306, 534, 999
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 1 cut(s) 620
AflII CTTAAG 1 cut(s) 1027
AflIII ACRYGT 1 cut(s) 111
AjnI CCWGG 3 cut(s) 186, 372, 984
AluBI AGCT 9 cut(s) 73, 228, 314, 404, 507, 850, 908, 974, 1106
AluI AGCT 9 cut(s) 73, 228, 314, 404, 507, 850, 908, 974, 1106
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 4 cut(s) 26, 75, 1060, 1276
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 1 cut(s) 639
AlwNI CAGNNNCTG 1 cut(s) 1217
AoxI GGCC 2 cut(s) 215, 455
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 850
ApoI RAATTY 1 cut(s) 1011
ArsI GACNNNNNNTTYG 2 cut(s) 934, 966
Asp700I GAANNNNTTC 2 cut(s) 105, 418
AspS9I GGNCC 3 cut(s) 675, 950, 1224
AsuHPI GGTGA 5 cut(s) 28, 482, 501, 620, 891
AvaII GGWCC 3 cut(s) 675, 950, 1224
AxyI CCTNAGG 1 cut(s) 744
BaeGI GKGCMC 1 cut(s) 283
BbsI GAAGAC 2 cut(s) 98, 987
Bbv12I GWGCWC 1 cut(s) 283
BbvCI CCTCAGC 1 cut(s) 1107
BbvI GCAGC 1 cut(s) 837
BccI CCATC 3 cut(s) 596, 1034, 1240
BciT130I CCWGG 3 cut(s) 188, 374, 986
BciVI GTATCC 1 cut(s) 592
BcoDI GTCTC 4 cut(s) 26, 75, 1060, 1276
BfaI CTAG 6 cut(s) 158, 315, 494, 570, 1088, 1098
BfrI CTTAAG 1 cut(s) 1027
BfuI GTATCC 1 cut(s) 592
BglII AGATCT 1 cut(s) 329
BisI GCNGC 2 cut(s) 42, 851
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 2 cut(s) 43, 852
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 3 cut(s) 188, 374, 986
Bme18I GGWCC 3 cut(s) 675, 950, 1224
BmgT120I GGNCC 3 cut(s) 675, 950, 1224
BmiI GGNNCC 2 cut(s) 1143, 1225
BmrFI CCNGG 3 cut(s) 188, 374, 986
BmsI GCATC 4 cut(s) 443, 907, 1199, 1223
BpiI GAAGAC 2 cut(s) 98, 987
BpmI CTGGAG 3 cut(s) 224, 810, 1182
Bpu10I CCTNAGC 1 cut(s) 1107
Bpu1102I GCTNAGC 1 cut(s) 564
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 1276
BsaJI CCNNGG 4 cut(s) 187, 372, 614, 700
BsaWI WCCGGW 2 cut(s) 10, 530
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse118I RCCGGY 1 cut(s) 947
Bse1I ACTGG 4 cut(s) 207, 438, 725, 1136
Bse21I CCTNAGG 1 cut(s) 744
BseBI CCWGG 3 cut(s) 188, 374, 986
BseDI CCNNGG 4 cut(s) 187, 372, 614, 700
BseGI GGATG 6 cut(s) 434, 607, 922, 1045, 1062, 1190
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMII CTCAG 4 cut(s) 555, 588, 758, 1098
BseNI ACTGG 4 cut(s) 207, 438, 725, 1136
BseRI GAGGAG 2 cut(s) 40, 809
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 1 cut(s) 837
BshFI GGCC 2 cut(s) 217, 457
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 3 cut(s) 11, 531, 948
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 4 cut(s) 26, 75, 1060, 1276
BsmBI CGTCTC 2 cut(s) 26, 75
BsnI GGCC 2 cut(s) 217, 457
Bso31I GGTCTC 1 cut(s) 1276
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 5 cut(s) 220, 329, 487, 631, 1171
Bsp1720I GCTNAGC 1 cut(s) 564
Bsp19I CCATGG 1 cut(s) 614
BspACI CCGC 2 cut(s) 41, 606
BspANI GGCC 2 cut(s) 217, 457
BspCNI CTCAG 4 cut(s) 556, 589, 757, 1099
BspLI GGNNCC 2 cut(s) 1143, 1225
BspPI GGATC 1 cut(s) 639
BspQI GCTCTTC 2 cut(s) 80, 937
BspTI CTTAAG 1 cut(s) 1027
BspTNI GGTCTC 1 cut(s) 1276
BsrFI RCCGGY 1 cut(s) 947
BsrI ACTGG 4 cut(s) 207, 438, 725, 1136
BssAI RCCGGY 1 cut(s) 947
BssECI CCNNGG 4 cut(s) 187, 372, 614, 700
BssMI GATC 5 cut(s) 220, 329, 487, 631, 1171
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 2 cut(s) 614, 700
Bst2UI CCWGG 3 cut(s) 188, 374, 986
Bst4CI ACNGT 1 cut(s) 835
Bst6I CTCTTC 2 cut(s) 80, 937
BstACI GRCGYC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 1027
BstAPI GCANNNNNTGC 1 cut(s) 126
BstC8I GCNNGC 4 cut(s) 46, 230, 575, 1254
BstDEI CTNAG 6 cut(s) 246, 564, 597, 744, 1107, 1165
BstDSI CCRYGG 1 cut(s) 614
BstF5I GGATG 6 cut(s) 434, 607, 922, 1045, 1062, 1190
BstKTI GATC 5 cut(s) 223, 332, 490, 634, 1174
BstMAI GTCTC 4 cut(s) 26, 75, 1060, 1276
BstMBI GATC 5 cut(s) 220, 329, 487, 631, 1171
BstMWI GCNNNNNNNGC 4 cut(s) 126, 416, 431, 574
BstNI CCWGG 3 cut(s) 188, 374, 986
BstNSI RCATGY 2 cut(s) 48, 734
BstSCI CCNGG 3 cut(s) 186, 372, 984
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 837
BstV2I GAAGAC 2 cut(s) 98, 987
BstX2I RGATCY 2 cut(s) 329, 631
BstXI CCANNNNNNTGG 1 cut(s) 445
BstYI RGATCY 2 cut(s) 329, 631
Bsu36I CCTNAGG 1 cut(s) 744
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 217, 457
BtgI CCRYGG 1 cut(s) 614
BtsCI GGATG 6 cut(s) 434, 607, 922, 1045, 1062, 1190
BtsIMutI CAGTG 3 cut(s) 200, 732, 1143
Cac8I GCNNGC 4 cut(s) 46, 230, 575, 1254
CaiI CAGNNNCTG 1 cut(s) 1217
Cfr10I RCCGGY 1 cut(s) 947
Cfr13I GGNCC 3 cut(s) 675, 950, 1224
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 810
CviAII CATG 6 cut(s) 45, 49, 382, 615, 731, 935
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 6 cut(s) 246, 564, 597, 744, 1107, 1165
DpnI GATC 5 cut(s) 222, 331, 489, 633, 1173
DpnII GATC 5 cut(s) 220, 329, 487, 631, 1171
DraI TTTAAA 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 80, 937
EarI CTCTTC 2 cut(s) 80, 937
Eco130I CCWWGG 2 cut(s) 614, 700
Eco147I AGGCCT 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 1276
Eco47I GGWCC 3 cut(s) 675, 950, 1224
Eco57I CTGAAG 5 cut(s) 61, 282, 306, 534, 999
Eco81I CCTNAGG 1 cut(s) 744
EcoO109I RGGNCCY 1 cut(s) 1224
EcoRII CCWGG 3 cut(s) 186, 372, 984
EcoT14I CCWWGG 2 cut(s) 614, 700
EcoT22I ATGCAT 1 cut(s) 50
ErhI CCWWGG 2 cut(s) 614, 700
Esp3I CGTCTC 2 cut(s) 26, 75
FaeI CATG 6 cut(s) 48, 52, 385, 618, 734, 938
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FatI CATG 6 cut(s) 44, 48, 381, 614, 730, 934
Fnu4HI GCNGC 2 cut(s) 42, 851
FokI GGATG 6 cut(s) 421, 614, 929, 1049, 1052, 1177
Fsp4HI GCNGC 2 cut(s) 42, 851
FspBI CTAG 6 cut(s) 158, 315, 494, 570, 1088, 1098
GluI GCNGC 2 cut(s) 42, 851
GsuI CTGGAG 3 cut(s) 224, 810, 1182
HaeIII GGCC 2 cut(s) 217, 457
HapII CCGG 3 cut(s) 11, 531, 948
HgaI GACGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 6 cut(s) 48, 52, 385, 618, 734, 938
HinfI GANTC 3 cut(s) 7, 875, 887
HpaII CCGG 3 cut(s) 11, 531, 948
HphI GGTGA 5 cut(s) 28, 482, 501, 620, 891
Hpy166II GTNNAC 3 cut(s) 281, 611, 740
Hpy188I TCNGA 6 cut(s) 80, 100, 148, 709, 979, 1017
Hpy188III TCNNGA 4 cut(s) 827, 1066, 1199, 1263
Hpy8I GTNNAC 3 cut(s) 281, 611, 740
Hpy99I CGWCG 2 cut(s) 343, 867
HpyAV CCTTC 4 cut(s) 306, 384, 614, 983
HpyCH4III ACNGT 1 cut(s) 835
HpyCH4IV ACGT 3 cut(s) 113, 1047, 1148
HpyCH4V TGCA 9 cut(s) 48, 120, 129, 177, 281, 410, 730, 884, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 416, 431, 574
HpyF3I CTNAG 6 cut(s) 246, 564, 597, 744, 1107, 1165
HpySE526I ACGT 3 cut(s) 113, 1047, 1148
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 6 cut(s) 48, 52, 385, 618, 734, 938
Kzo9I GATC 5 cut(s) 220, 329, 487, 631, 1171
LguI GCTCTTC 2 cut(s) 80, 937
Lsp1109I GCAGC 1 cut(s) 837
LweI GCATC 4 cut(s) 443, 907, 1199, 1223
MaeI CTAG 6 cut(s) 158, 315, 494, 570, 1088, 1098
MaeII ACGT 3 cut(s) 113, 1047, 1148
MaeIII GTNAC 2 cut(s) 301, 1022
MalI GATC 5 cut(s) 222, 331, 489, 633, 1173
MboI GATC 5 cut(s) 220, 329, 487, 631, 1171
MboII GAAGA 7 cut(s) 67, 98, 279, 330, 497, 954, 992
MflI RGATCY 2 cut(s) 329, 631
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 6 cut(s) 209, 626, 649, 954, 1011, 1206
MmeI TCCRAC 2 cut(s) 717, 1040
Mph1103I ATGCAT 1 cut(s) 50
MroXI GAANNNNTTC 2 cut(s) 105, 418
MseI TTAA 6 cut(s) 212, 261, 462, 647, 1028, 1119
MslI CAYNNNNRTG 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 228
MspCI CTTAAG 1 cut(s) 1027
MspI CCGG 3 cut(s) 11, 531, 948
MspR9I CCNGG 3 cut(s) 188, 374, 986
MvaI CCWGG 3 cut(s) 188, 374, 986
MwoI GCNNNNNNNGC 4 cut(s) 126, 416, 431, 574
NcoI CCATGG 1 cut(s) 614
NdeII GATC 5 cut(s) 220, 329, 487, 631, 1171
NlaIII CATG 6 cut(s) 48, 52, 385, 618, 734, 938
NlaIV GGNNCC 2 cut(s) 1143, 1225
NmeAIII GCCGAG 1 cut(s) 573
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 2 cut(s) 48, 734
PaeI GCATGC 1 cut(s) 48
PceI AGGCCT 1 cut(s) 457
PciSI GCTCTTC 2 cut(s) 80, 937
PdmI GAANNNNTTC 2 cut(s) 105, 418
PfeI GAWTC 3 cut(s) 7, 875, 887
PflFI GACNNNGTC 1 cut(s) 679
PkrI GCNGC 2 cut(s) 43, 852
PpuMI RGGWCCY 1 cut(s) 1224
Psp5II RGGWCCY 1 cut(s) 1224
Psp6I CCWGG 3 cut(s) 186, 372, 984
PspGI CCWGG 3 cut(s) 186, 372, 984
PspN4I GGNNCC 2 cut(s) 1143, 1225
PspPI GGNCC 3 cut(s) 675, 950, 1224
PspPPI RGGWCCY 1 cut(s) 1224
PstNI CAGNNNCTG 1 cut(s) 1217
PsuI RGATCY 2 cut(s) 329, 631
PsyI GACNNNGTC 1 cut(s) 679
PvuII CAGCTG 1 cut(s) 228
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
RseI CAYNNNNRTG 1 cut(s) 735
SapI GCTCTTC 2 cut(s) 80, 937
SaqAI TTAA 6 cut(s) 212, 261, 462, 647, 1028, 1119
SatI GCNGC 2 cut(s) 42, 851
Sau3AI GATC 5 cut(s) 220, 329, 487, 631, 1171
Sau96I GGNCC 3 cut(s) 675, 950, 1224
ScaI AGTACT 1 cut(s) 811
ScrFI CCNGG 3 cut(s) 188, 374, 986
SduI GDGCHC 1 cut(s) 283
SfaNI GCATC 4 cut(s) 443, 907, 1199, 1223
SinI GGWCC 3 cut(s) 675, 950, 1224
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 1 cut(s) 1027
SmoI CTYRAG 1 cut(s) 1027
SphI GCATGC 1 cut(s) 48
Sse9I AATT 6 cut(s) 209, 626, 649, 954, 1011, 1206
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 2 cut(s) 41, 606
SspMI CTAG 6 cut(s) 158, 315, 494, 570, 1088, 1098
StuI AGGCCT 1 cut(s) 457
StyD4I CCNGG 3 cut(s) 186, 372, 984
StyI CCWWGG 2 cut(s) 614, 700
TaaI ACNGT 1 cut(s) 835
TaiI ACGT 3 cut(s) 116, 1050, 1151
TaqI TCGA 2 cut(s) 660, 862
TasI AATT 6 cut(s) 209, 626, 649, 954, 1011, 1206
TatI WGTACW 1 cut(s) 809
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 3 cut(s) 7, 875, 887
Tru1I TTAA 6 cut(s) 212, 261, 462, 647, 1028, 1119
Tru9I TTAA 6 cut(s) 212, 261, 462, 647, 1028, 1119
TscAI CASTG 3 cut(s) 207, 732, 1143
TseI GCWGC 1 cut(s) 850
TspDTI ATGAA 3 cut(s) 951, 1011, 1051
TspRI CASTG 3 cut(s) 207, 732, 1143
Tth111I GACNNNGTC 1 cut(s) 679
Vha464I CTTAAG 1 cut(s) 1027
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 3 cut(s) 675, 950, 1224
XapI RAATTY 1 cut(s) 1011
XceI RCATGY 2 cut(s) 48, 734
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XmnI GAANNNNTTC 2 cut(s) 105, 418
XspI CTAG 6 cut(s) 158, 315, 494, 570, 1088, 1098
ZrmI AGTACT 1 cut(s) 811
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.