E3 ubiquitin protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580 |
| fragaria_vesca | FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710 |
| malus_domestica | MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1 |
| prunus_persica | Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1 |
| pyrus_communis | pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160 |
| rosa_chinensis | RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351 |
| rosa_laevigata | RLG00000012310 RLG00000025707 |
| rosa_multiflora | Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00428390 Rroxscaffold_7G00179330 |
| rosa_rugosa | Rorug02G0629900 Rorug02G0630000 Rorug06G0202900 |
| rosa_samantha | Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200 |
| rosa_wichuraiana | Rw3G002380 Rw6G027130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 41, 606 |
| AclWI | GGATC | 1 cut(s) | 639 |
| AcsI | RAATTY | 1 cut(s) | 1011 |
| AcuI | CTGAAG | 5 cut(s) | 61, 282, 306, 534, 999 |
| AcyI | GRCGYC | 1 cut(s) | 84 |
| AfaI | GTAC | 1 cut(s) | 811 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 620 |
| AflII | CTTAAG | 1 cut(s) | 1027 |
| AflIII | ACRYGT | 1 cut(s) | 111 |
| AjnI | CCWGG | 3 cut(s) | 186, 372, 984 |
| AluBI | AGCT | 9 cut(s) | 73, 228, 314, 404, 507, 850, 908, 974, 1106 |
| AluI | AGCT | 9 cut(s) | 73, 228, 314, 404, 507, 850, 908, 974, 1106 |
| Alw21I | GWGCWC | 1 cut(s) | 283 |
| Alw26I | GTCTC | 4 cut(s) | 26, 75, 1060, 1276 |
| Alw44I | GTGCAC | 1 cut(s) | 279 |
| AlwI | GGATC | 1 cut(s) | 639 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1217 |
| AoxI | GGCC | 2 cut(s) | 215, 455 |
| ApaLI | GTGCAC | 1 cut(s) | 279 |
| ApeKI | GCWGC | 1 cut(s) | 850 |
| ApoI | RAATTY | 1 cut(s) | 1011 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 934, 966 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 105, 418 |
| AspS9I | GGNCC | 3 cut(s) | 675, 950, 1224 |
| AsuHPI | GGTGA | 5 cut(s) | 28, 482, 501, 620, 891 |
| AvaII | GGWCC | 3 cut(s) | 675, 950, 1224 |
| AxyI | CCTNAGG | 1 cut(s) | 744 |
| BaeGI | GKGCMC | 1 cut(s) | 283 |
| BbsI | GAAGAC | 2 cut(s) | 98, 987 |
| Bbv12I | GWGCWC | 1 cut(s) | 283 |
| BbvCI | CCTCAGC | 1 cut(s) | 1107 |
| BbvI | GCAGC | 1 cut(s) | 837 |
| BccI | CCATC | 3 cut(s) | 596, 1034, 1240 |
| BciT130I | CCWGG | 3 cut(s) | 188, 374, 986 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BcoDI | GTCTC | 4 cut(s) | 26, 75, 1060, 1276 |
| BfaI | CTAG | 6 cut(s) | 158, 315, 494, 570, 1088, 1098 |
| BfrI | CTTAAG | 1 cut(s) | 1027 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BglII | AGATCT | 1 cut(s) | 329 |
| BisI | GCNGC | 2 cut(s) | 42, 851 |
| BlpI | GCTNAGC | 1 cut(s) | 564 |
| BlsI | GCNGC | 2 cut(s) | 43, 852 |
| BmcAI | AGTACT | 1 cut(s) | 811 |
| Bme1390I | CCNGG | 3 cut(s) | 188, 374, 986 |
| Bme18I | GGWCC | 3 cut(s) | 675, 950, 1224 |
| BmgT120I | GGNCC | 3 cut(s) | 675, 950, 1224 |
| BmiI | GGNNCC | 2 cut(s) | 1143, 1225 |
| BmrFI | CCNGG | 3 cut(s) | 188, 374, 986 |
| BmsI | GCATC | 4 cut(s) | 443, 907, 1199, 1223 |
| BpiI | GAAGAC | 2 cut(s) | 98, 987 |
| BpmI | CTGGAG | 3 cut(s) | 224, 810, 1182 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1107 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 564 |
| BsaHI | GRCGYC | 1 cut(s) | 84 |
| BsaI | GGTCTC | 1 cut(s) | 1276 |
| BsaJI | CCNNGG | 4 cut(s) | 187, 372, 614, 700 |
| BsaWI | WCCGGW | 2 cut(s) | 10, 530 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 620 |
| Bse118I | RCCGGY | 1 cut(s) | 947 |
| Bse1I | ACTGG | 4 cut(s) | 207, 438, 725, 1136 |
| Bse21I | CCTNAGG | 1 cut(s) | 744 |
| BseBI | CCWGG | 3 cut(s) | 188, 374, 986 |
| BseDI | CCNNGG | 4 cut(s) | 187, 372, 614, 700 |
| BseGI | GGATG | 6 cut(s) | 434, 607, 922, 1045, 1062, 1190 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 620 |
| BseMII | CTCAG | 4 cut(s) | 555, 588, 758, 1098 |
| BseNI | ACTGG | 4 cut(s) | 207, 438, 725, 1136 |
| BseRI | GAGGAG | 2 cut(s) | 40, 809 |
| BseSI | GKGCMC | 1 cut(s) | 283 |
| BseXI | GCAGC | 1 cut(s) | 837 |
| BshFI | GGCC | 2 cut(s) | 217, 457 |
| BsiHKAI | GWGCWC | 1 cut(s) | 283 |
| BsiSI | CCGG | 3 cut(s) | 11, 531, 948 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 620 |
| BsmAI | GTCTC | 4 cut(s) | 26, 75, 1060, 1276 |
| BsmBI | CGTCTC | 2 cut(s) | 26, 75 |
| BsnI | GGCC | 2 cut(s) | 217, 457 |
| Bso31I | GGTCTC | 1 cut(s) | 1276 |
| Bsp1286I | GDGCHC | 1 cut(s) | 283 |
| Bsp143I | GATC | 5 cut(s) | 220, 329, 487, 631, 1171 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 564 |
| Bsp19I | CCATGG | 1 cut(s) | 614 |
| BspACI | CCGC | 2 cut(s) | 41, 606 |
| BspANI | GGCC | 2 cut(s) | 217, 457 |
| BspCNI | CTCAG | 4 cut(s) | 556, 589, 757, 1099 |
| BspLI | GGNNCC | 2 cut(s) | 1143, 1225 |
| BspPI | GGATC | 1 cut(s) | 639 |
| BspQI | GCTCTTC | 2 cut(s) | 80, 937 |
| BspTI | CTTAAG | 1 cut(s) | 1027 |
| BspTNI | GGTCTC | 1 cut(s) | 1276 |
| BsrFI | RCCGGY | 1 cut(s) | 947 |
| BsrI | ACTGG | 4 cut(s) | 207, 438, 725, 1136 |
| BssAI | RCCGGY | 1 cut(s) | 947 |
| BssECI | CCNNGG | 4 cut(s) | 187, 372, 614, 700 |
| BssMI | GATC | 5 cut(s) | 220, 329, 487, 631, 1171 |
| BssNI | GRCGYC | 1 cut(s) | 84 |
| BssT1I | CCWWGG | 2 cut(s) | 614, 700 |
| Bst2UI | CCWGG | 3 cut(s) | 188, 374, 986 |
| Bst4CI | ACNGT | 1 cut(s) | 835 |
| Bst6I | CTCTTC | 2 cut(s) | 80, 937 |
| BstACI | GRCGYC | 1 cut(s) | 84 |
| BstAFI | CTTAAG | 1 cut(s) | 1027 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 4 cut(s) | 46, 230, 575, 1254 |
| BstDEI | CTNAG | 6 cut(s) | 246, 564, 597, 744, 1107, 1165 |
| BstDSI | CCRYGG | 1 cut(s) | 614 |
| BstF5I | GGATG | 6 cut(s) | 434, 607, 922, 1045, 1062, 1190 |
| BstKTI | GATC | 5 cut(s) | 223, 332, 490, 634, 1174 |
| BstMAI | GTCTC | 4 cut(s) | 26, 75, 1060, 1276 |
| BstMBI | GATC | 5 cut(s) | 220, 329, 487, 631, 1171 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 126, 416, 431, 574 |
| BstNI | CCWGG | 3 cut(s) | 188, 374, 986 |
| BstNSI | RCATGY | 2 cut(s) | 48, 734 |
| BstSCI | CCNGG | 3 cut(s) | 186, 372, 984 |
| BstSLI | GKGCMC | 1 cut(s) | 283 |
| BstV1I | GCAGC | 1 cut(s) | 837 |
| BstV2I | GAAGAC | 2 cut(s) | 98, 987 |
| BstX2I | RGATCY | 2 cut(s) | 329, 631 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 445 |
| BstYI | RGATCY | 2 cut(s) | 329, 631 |
| Bsu36I | CCTNAGG | 1 cut(s) | 744 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 2 cut(s) | 217, 457 |
| BtgI | CCRYGG | 1 cut(s) | 614 |
| BtsCI | GGATG | 6 cut(s) | 434, 607, 922, 1045, 1062, 1190 |
| BtsIMutI | CAGTG | 3 cut(s) | 200, 732, 1143 |
| Cac8I | GCNNGC | 4 cut(s) | 46, 230, 575, 1254 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1217 |
| Cfr10I | RCCGGY | 1 cut(s) | 947 |
| Cfr13I | GGNCC | 3 cut(s) | 675, 950, 1224 |
| CseI | GACGC | 1 cut(s) | 92 |
| Csp6I | GTAC | 1 cut(s) | 810 |
| CviAII | CATG | 6 cut(s) | 45, 49, 382, 615, 731, 935 |
| CviQI | GTAC | 1 cut(s) | 810 |
| DdeI | CTNAG | 6 cut(s) | 246, 564, 597, 744, 1107, 1165 |
| DpnI | GATC | 5 cut(s) | 222, 331, 489, 633, 1173 |
| DpnII | GATC | 5 cut(s) | 220, 329, 487, 631, 1171 |
| DraI | TTTAAA | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 2 cut(s) | 80, 937 |
| EarI | CTCTTC | 2 cut(s) | 80, 937 |
| Eco130I | CCWWGG | 2 cut(s) | 614, 700 |
| Eco147I | AGGCCT | 1 cut(s) | 457 |
| Eco31I | GGTCTC | 1 cut(s) | 1276 |
| Eco47I | GGWCC | 3 cut(s) | 675, 950, 1224 |
| Eco57I | CTGAAG | 5 cut(s) | 61, 282, 306, 534, 999 |
| Eco81I | CCTNAGG | 1 cut(s) | 744 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1224 |
| EcoRII | CCWGG | 3 cut(s) | 186, 372, 984 |
| EcoT14I | CCWWGG | 2 cut(s) | 614, 700 |
| EcoT22I | ATGCAT | 1 cut(s) | 50 |
| ErhI | CCWWGG | 2 cut(s) | 614, 700 |
| Esp3I | CGTCTC | 2 cut(s) | 26, 75 |
| FaeI | CATG | 6 cut(s) | 48, 52, 385, 618, 734, 938 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 403, 435 |
| FatI | CATG | 6 cut(s) | 44, 48, 381, 614, 730, 934 |
| Fnu4HI | GCNGC | 2 cut(s) | 42, 851 |
| FokI | GGATG | 6 cut(s) | 421, 614, 929, 1049, 1052, 1177 |
| Fsp4HI | GCNGC | 2 cut(s) | 42, 851 |
| FspBI | CTAG | 6 cut(s) | 158, 315, 494, 570, 1088, 1098 |
| GluI | GCNGC | 2 cut(s) | 42, 851 |
| GsuI | CTGGAG | 3 cut(s) | 224, 810, 1182 |
| HaeIII | GGCC | 2 cut(s) | 217, 457 |
| HapII | CCGG | 3 cut(s) | 11, 531, 948 |
| HgaI | GACGC | 1 cut(s) | 92 |
| Hin1I | GRCGYC | 1 cut(s) | 84 |
| Hin1II | CATG | 6 cut(s) | 48, 52, 385, 618, 734, 938 |
| HinfI | GANTC | 3 cut(s) | 7, 875, 887 |
| HpaII | CCGG | 3 cut(s) | 11, 531, 948 |
| HphI | GGTGA | 5 cut(s) | 28, 482, 501, 620, 891 |
| Hpy166II | GTNNAC | 3 cut(s) | 281, 611, 740 |
| Hpy188I | TCNGA | 6 cut(s) | 80, 100, 148, 709, 979, 1017 |
| Hpy188III | TCNNGA | 4 cut(s) | 827, 1066, 1199, 1263 |
| Hpy8I | GTNNAC | 3 cut(s) | 281, 611, 740 |
| Hpy99I | CGWCG | 2 cut(s) | 343, 867 |
| HpyAV | CCTTC | 4 cut(s) | 306, 384, 614, 983 |
| HpyCH4III | ACNGT | 1 cut(s) | 835 |
| HpyCH4IV | ACGT | 3 cut(s) | 113, 1047, 1148 |
| HpyCH4V | TGCA | 9 cut(s) | 48, 120, 129, 177, 281, 410, 730, 884, 920 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 126, 416, 431, 574 |
| HpyF3I | CTNAG | 6 cut(s) | 246, 564, 597, 744, 1107, 1165 |
| HpySE526I | ACGT | 3 cut(s) | 113, 1047, 1148 |
| Hsp92I | GRCGYC | 1 cut(s) | 84 |
| Hsp92II | CATG | 6 cut(s) | 48, 52, 385, 618, 734, 938 |
| Kzo9I | GATC | 5 cut(s) | 220, 329, 487, 631, 1171 |
| LguI | GCTCTTC | 2 cut(s) | 80, 937 |
| Lsp1109I | GCAGC | 1 cut(s) | 837 |
| LweI | GCATC | 4 cut(s) | 443, 907, 1199, 1223 |
| MaeI | CTAG | 6 cut(s) | 158, 315, 494, 570, 1088, 1098 |
| MaeII | ACGT | 3 cut(s) | 113, 1047, 1148 |
| MaeIII | GTNAC | 2 cut(s) | 301, 1022 |
| MalI | GATC | 5 cut(s) | 222, 331, 489, 633, 1173 |
| MboI | GATC | 5 cut(s) | 220, 329, 487, 631, 1171 |
| MboII | GAAGA | 7 cut(s) | 67, 98, 279, 330, 497, 954, 992 |
| MflI | RGATCY | 2 cut(s) | 329, 631 |
| MhlI | GDGCHC | 1 cut(s) | 283 |
| MluCI | AATT | 6 cut(s) | 209, 626, 649, 954, 1011, 1206 |
| MmeI | TCCRAC | 2 cut(s) | 717, 1040 |
| Mph1103I | ATGCAT | 1 cut(s) | 50 |
| MroXI | GAANNNNTTC | 2 cut(s) | 105, 418 |
| MseI | TTAA | 6 cut(s) | 212, 261, 462, 647, 1028, 1119 |
| MslI | CAYNNNNRTG | 1 cut(s) | 735 |
| MspA1I | CMGCKG | 1 cut(s) | 228 |
| MspCI | CTTAAG | 1 cut(s) | 1027 |
| MspI | CCGG | 3 cut(s) | 11, 531, 948 |
| MspR9I | CCNGG | 3 cut(s) | 188, 374, 986 |
| MvaI | CCWGG | 3 cut(s) | 188, 374, 986 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 126, 416, 431, 574 |
| NcoI | CCATGG | 1 cut(s) | 614 |
| NdeII | GATC | 5 cut(s) | 220, 329, 487, 631, 1171 |
| NlaIII | CATG | 6 cut(s) | 48, 52, 385, 618, 734, 938 |
| NlaIV | GGNNCC | 2 cut(s) | 1143, 1225 |
| NmeAIII | GCCGAG | 1 cut(s) | 573 |
| NsiI | ATGCAT | 1 cut(s) | 50 |
| NspI | RCATGY | 2 cut(s) | 48, 734 |
| PaeI | GCATGC | 1 cut(s) | 48 |
| PceI | AGGCCT | 1 cut(s) | 457 |
| PciSI | GCTCTTC | 2 cut(s) | 80, 937 |
| PdmI | GAANNNNTTC | 2 cut(s) | 105, 418 |
| PfeI | GAWTC | 3 cut(s) | 7, 875, 887 |
| PflFI | GACNNNGTC | 1 cut(s) | 679 |
| PkrI | GCNGC | 2 cut(s) | 43, 852 |
| PpuMI | RGGWCCY | 1 cut(s) | 1224 |
| Psp5II | RGGWCCY | 1 cut(s) | 1224 |
| Psp6I | CCWGG | 3 cut(s) | 186, 372, 984 |
| PspGI | CCWGG | 3 cut(s) | 186, 372, 984 |
| PspN4I | GGNNCC | 2 cut(s) | 1143, 1225 |
| PspPI | GGNCC | 3 cut(s) | 675, 950, 1224 |
| PspPPI | RGGWCCY | 1 cut(s) | 1224 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1217 |
| PsuI | RGATCY | 2 cut(s) | 329, 631 |
| PsyI | GACNNNGTC | 1 cut(s) | 679 |
| PvuII | CAGCTG | 1 cut(s) | 228 |
| RsaI | GTAC | 1 cut(s) | 811 |
| RsaNI | GTAC | 1 cut(s) | 810 |
| RseI | CAYNNNNRTG | 1 cut(s) | 735 |
| SapI | GCTCTTC | 2 cut(s) | 80, 937 |
| SaqAI | TTAA | 6 cut(s) | 212, 261, 462, 647, 1028, 1119 |
| SatI | GCNGC | 2 cut(s) | 42, 851 |
| Sau3AI | GATC | 5 cut(s) | 220, 329, 487, 631, 1171 |
| Sau96I | GGNCC | 3 cut(s) | 675, 950, 1224 |
| ScaI | AGTACT | 1 cut(s) | 811 |
| ScrFI | CCNGG | 3 cut(s) | 188, 374, 986 |
| SduI | GDGCHC | 1 cut(s) | 283 |
| SfaNI | GCATC | 4 cut(s) | 443, 907, 1199, 1223 |
| SinI | GGWCC | 3 cut(s) | 675, 950, 1224 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 735 |
| SmlI | CTYRAG | 1 cut(s) | 1027 |
| SmoI | CTYRAG | 1 cut(s) | 1027 |
| SphI | GCATGC | 1 cut(s) | 48 |
| Sse9I | AATT | 6 cut(s) | 209, 626, 649, 954, 1011, 1206 |
| SseBI | AGGCCT | 1 cut(s) | 457 |
| SsiI | CCGC | 2 cut(s) | 41, 606 |
| SspMI | CTAG | 6 cut(s) | 158, 315, 494, 570, 1088, 1098 |
| StuI | AGGCCT | 1 cut(s) | 457 |
| StyD4I | CCNGG | 3 cut(s) | 186, 372, 984 |
| StyI | CCWWGG | 2 cut(s) | 614, 700 |
| TaaI | ACNGT | 1 cut(s) | 835 |
| TaiI | ACGT | 3 cut(s) | 116, 1050, 1151 |
| TaqI | TCGA | 2 cut(s) | 660, 862 |
| TasI | AATT | 6 cut(s) | 209, 626, 649, 954, 1011, 1206 |
| TatI | WGTACW | 1 cut(s) | 809 |
| TauI | GCSGC | 1 cut(s) | 44 |
| TfiI | GAWTC | 3 cut(s) | 7, 875, 887 |
| Tru1I | TTAA | 6 cut(s) | 212, 261, 462, 647, 1028, 1119 |
| Tru9I | TTAA | 6 cut(s) | 212, 261, 462, 647, 1028, 1119 |
| TscAI | CASTG | 3 cut(s) | 207, 732, 1143 |
| TseI | GCWGC | 1 cut(s) | 850 |
| TspDTI | ATGAA | 3 cut(s) | 951, 1011, 1051 |
| TspRI | CASTG | 3 cut(s) | 207, 732, 1143 |
| Tth111I | GACNNNGTC | 1 cut(s) | 679 |
| Vha464I | CTTAAG | 1 cut(s) | 1027 |
| VneI | GTGCAC | 1 cut(s) | 279 |
| VpaK11BI | GGWCC | 3 cut(s) | 675, 950, 1224 |
| XapI | RAATTY | 1 cut(s) | 1011 |
| XceI | RCATGY | 2 cut(s) | 48, 734 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 225 |
| XmnI | GAANNNNTTC | 2 cut(s) | 105, 418 |
| XspI | CTAG | 6 cut(s) | 158, 315, 494, 570, 1088, 1098 |
| ZrmI | AGTACT | 1 cut(s) | 811 |
| Zsp2I | ATGCAT | 1 cut(s) | 50 |