AT2G30580

protein binding ubiquitin-protein ligase zinc ion binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
13025911 .. 13030661
4751 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30580.2

Sequence Viewer

Length: 1263 bp
ATGGAAGGAGACATGGTGGCTAAAGTGAAGAGAGAAACGGTGGTGGCATGCATGACTTGTCCTCTCTGTGACAAACTCCTCCGTGACGCCACTACCATTTCAGAGTGTCTTCACACGTTTTGTAGGAAATGCATTTATGAGAAAATCACAGAGGATGAGATAGAGAGCTGTCCAGTATGCGATATTGACCTCGGGGGTACCCCACTGGAGAAACTAAGGCCTGACCACATTTTGCAAGACTTGAGAGCCAAATTATTTCCTCTAAAACGTAAAAAGGAGAGAGCGCCTGAAGTTGTGTCCTCCATCTCATTACCTGCAAAGAGGAAGGAGAGGTCTATCTCGTCTTTGGTGGTAAGCACACCCAGGGTTTCAGCACAAGCTGGTACAACAGGAAAAAGAACAAAAGCTGCTACGAGAAAAGATGTAAGAGGTAGTGGTTCATTCACTAAGAGAACAGTGAAGAAGGAAGAAGAATTTGGAGATGATCATGTAGAGAGCGCAAGCTCGCCTGAAACACTTAAAAAGTTTACTCAGAATAAAAGACAGTCTTCATATGCAAATCCTAACCAGTCCCTCTCTAATCGAAGAAACAAGGATGTTGATGAACCATGGGATTCCAAATTACATCTTTGGAAACCTCTAAATTTTCTTGTGGATGTGGCAAACGGAACAAAGGACCCAAAATCTGAGCTTGGAAACGCATCCCACAATGATGTTCAGGGGAGTAAAACCAAAACAAAGGATCATAAAAGAAAGTGTAAACTCGAGGAAGAGATCAGCAATAACGGTGATCCTACAACATCAGAAACTGCTACACTTAAACGAACGCGTCGGACTCGTCGCAAAAGGTCATCTACTTTTGGTGATTCTAGAATTCCACTGTTACCAGGTGCAGCAAGCCTAAAACAGGAGAGGAGAAACGGTCATGTTTGGTTCTCACTTGTAGCGTCAAGTAATCAGGAAGGAGAAGCATCATTGCCTCAGATTCCAGCAAACTACTTGAGAATAAGGGATGGAAATATTCCAGTTTCTTTTATCCAAAAGTACCTCATGAGGAAGCTTGATCTCAAGAGTGAAGATGAGGTAGAGATAACATGTATGGGAGAACCAGTGATCCCAACGTTGCAGCTTCACAGCTTAGTAGACCTATGGTTGGAAACAACTTCTAAGCATCAAAGAGTCGCTGCGTCAATAGGTTCATCTGCAAAGGAATTTGTAATGGTGCTAGTTTATTCTCGGAAGCTCCCTGAATGCAACAACTAA

Protein Analysis

420

Amino Acids

47.19

Weight (kDa)

9.35

Isoelectric Point (pI)

62.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 20 - 60 3.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 20 - 60 3.1e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 1143
AccII CGCG 1 cut(s) 829
AclI AACGTT 1 cut(s) 1121
AclWI GGATC 3 cut(s) 750, 785, 1108
AcsI RAATTY 4 cut(s) 473, 643, 873, 1211
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 199, 385, 1046
AfiI CCNNNNNNNGG 2 cut(s) 907, 1153
AflIII ACRYGT 3 cut(s) 114, 827, 1094
AjnI CCWGG 2 cut(s) 362, 886
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AloI GAACNNNNNNTCC 2 cut(s) 1098, 1130
AluBI AGCT 9 cut(s) 168, 380, 407, 504, 691, 1060, 1129, 1137, 1243
AluI AGCT 9 cut(s) 168, 380, 407, 504, 691, 1060, 1129, 1137, 1243
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 3 cut(s) 750, 785, 1108
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 2 cut(s) 191, 764
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 4 cut(s) 407, 893, 1126, 1184
ApoI RAATTY 4 cut(s) 473, 643, 873, 1211
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 2 cut(s) 286, 500
AspS9I GGNCC 1 cut(s) 676
AsuHPI GGTGA 2 cut(s) 800, 875
AvaI CYCGRG 2 cut(s) 191, 764
AvaII GGWCC 1 cut(s) 676
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 101, 540
BbvI GCAGC 4 cut(s) 394, 905, 1138, 1171
BccI CCATC 2 cut(s) 311, 1007
BciT130I CCWGG 2 cut(s) 364, 888
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 2 cut(s) 870, 1226
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 4 cut(s) 408, 894, 1127, 1185
BlsI GCNGC 4 cut(s) 409, 895, 1128, 1186
Bme1390I CCNGG 2 cut(s) 364, 888
Bme18I GGWCC 1 cut(s) 676
BmeT110I CYCGRG 2 cut(s) 191, 764
BmgT120I GGNCC 1 cut(s) 676
BmiI GGNNCC 2 cut(s) 199, 678
BmrFI CCNGG 2 cut(s) 364, 888
BmsI GCATC 3 cut(s) 710, 980, 1180
BpiI GAAGAC 2 cut(s) 101, 540
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 3 cut(s) 262, 1021, 1052
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 4 cut(s) 190, 362, 363, 608
BsaXI ACNNNNNCTCC 5 cut(s) 30, 907, 937, 1095, 1125
Bsc4I CCNNNNNNNGG 2 cut(s) 907, 1153
Bse1I ACTGG 5 cut(s) 173, 210, 568, 1025, 1109
Bse3DI GCAATG 1 cut(s) 974
BseBI CCWGG 2 cut(s) 364, 888
BseDI CCNNGG 4 cut(s) 190, 362, 363, 608
BseGI GGATG 5 cut(s) 160, 601, 661, 701, 1018
BseLI CCNNNNNNNGG 2 cut(s) 907, 1153
BseMI GCAATG 1 cut(s) 974
BseMII CTCAG 3 cut(s) 545, 678, 995
BseNI ACTGG 5 cut(s) 173, 210, 568, 1025, 1109
BseRI GAGGAG 2 cut(s) 68, 928
BseXI GCAGC 4 cut(s) 394, 905, 1138, 1171
BsgI GTGCAG 1 cut(s) 912
Bsh1236I CGCG 1 cut(s) 829
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 197
BsiHKCI CYCGRG 2 cut(s) 191, 764
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 2 cut(s) 907, 1153
BsmAI GTCTC 1 cut(s) 3
BsmFI GGGAC 1 cut(s) 556
BsmI GAATGC 1 cut(s) 1256
BsnI GGCC 1 cut(s) 220
BsoBI CYCGRG 2 cut(s) 191, 764
Bsp143I GATC 6 cut(s) 484, 742, 774, 790, 1063, 1113
Bsp19I CCATGG 1 cut(s) 608
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 3 cut(s) 544, 679, 994
BspFNI CGCG 1 cut(s) 829
BspHI TCATGA 1 cut(s) 1050
BspLI GGNNCC 2 cut(s) 199, 678
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 3 cut(s) 750, 785, 1108
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 974
BsrI ACTGG 5 cut(s) 173, 210, 568, 1025, 1109
BssECI CCNNGG 4 cut(s) 190, 362, 363, 608
BssMI GATC 6 cut(s) 484, 742, 774, 790, 1063, 1113
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 608
Bst2UI CCWGG 2 cut(s) 364, 888
Bst4CI ACNGT 6 cut(s) 40, 457, 546, 788, 882, 923
Bst6I CTCTTC 2 cut(s) 23, 765
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 4 cut(s) 49, 502, 506, 898
BstDEI CTNAG 7 cut(s) 215, 447, 531, 687, 981, 1138, 1167
BstDSI CCRYGG 1 cut(s) 608
BstENI CCTNNNNNAGG 1 cut(s) 905
BstF5I GGATG 5 cut(s) 160, 601, 661, 701, 1018
BstFNI CGCG 1 cut(s) 829
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 286, 500
BstKTI GATC 6 cut(s) 487, 745, 777, 793, 1066, 1116
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 6 cut(s) 484, 742, 774, 790, 1063, 1113
BstNI CCWGG 2 cut(s) 364, 888
BstNSI RCATGY 2 cut(s) 51, 1098
BstSCI CCNGG 2 cut(s) 362, 886
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 4 cut(s) 394, 905, 1138, 1171
BstV2I GAAGAC 2 cut(s) 101, 540
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 5 cut(s) 160, 601, 661, 701, 1018
BtsIMutI CAGTG 4 cut(s) 203, 462, 878, 1116
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 4 cut(s) 49, 502, 506, 898
CaiI CAGNNNCTG 1 cut(s) 809
CciI TCATGA 1 cut(s) 1050
CfoI GCGC 2 cut(s) 286, 500
Cfr13I GGNCC 1 cut(s) 676
CseI GACGC 4 cut(s) 95, 818, 936, 1176
CsiI ACCWGGT 1 cut(s) 886
Csp6I GTAC 3 cut(s) 198, 384, 1045
CviAII CATG 8 cut(s) 13, 48, 52, 488, 609, 926, 1051, 1095
CviQI GTAC 3 cut(s) 198, 384, 1045
DdeI CTNAG 7 cut(s) 215, 447, 531, 687, 981, 1138, 1167
DpnI GATC 6 cut(s) 486, 744, 776, 792, 1065, 1115
DpnII GATC 6 cut(s) 484, 742, 774, 790, 1063, 1113
Eam1104I CTCTTC 2 cut(s) 23, 765
EarI CTCTTC 2 cut(s) 23, 765
Eco130I CCWWGG 1 cut(s) 608
Eco147I AGGCCT 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 676
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 2 cut(s) 191, 764
EcoNI CCTNNNNNAGG 1 cut(s) 905
EcoO109I RGGNCCY 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 873
EcoRII CCWGG 2 cut(s) 362, 886
EcoT14I CCWWGG 1 cut(s) 608
EcoT22I ATGCAT 2 cut(s) 53, 134
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 8 cut(s) 16, 51, 55, 491, 612, 929, 1054, 1098
FalI AAGNNNNNCTT 2 cut(s) 532, 564
FaqI GGGAC 1 cut(s) 556
FatI CATG 8 cut(s) 12, 47, 51, 487, 608, 925, 1050, 1094
FauNDI CATATG 1 cut(s) 553
FbaI TGATCA 1 cut(s) 484
FblI GTMKAC 1 cut(s) 1143
Fnu4HI GCNGC 4 cut(s) 408, 894, 1127, 1185
FokI GGATG 5 cut(s) 167, 608, 668, 688, 1025
Fsp4HI GCNGC 4 cut(s) 408, 894, 1127, 1185
FspBI CTAG 2 cut(s) 870, 1226
GlaI GCGC 2 cut(s) 285, 499
GluI GCNGC 4 cut(s) 408, 894, 1127, 1185
GsuI CTGGAG 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 1 cut(s) 220
HgaI GACGC 4 cut(s) 95, 818, 936, 1176
HhaI GCGC 2 cut(s) 286, 500
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 8 cut(s) 16, 51, 55, 491, 612, 929, 1054, 1098
Hin6I GCGC 2 cut(s) 284, 498
HinP1I GCGC 2 cut(s) 284, 498
HindIII AAGCTT 1 cut(s) 1058
HinfI GANTC 5 cut(s) 614, 835, 866, 985, 1179
HphI GGTGA 2 cut(s) 800, 875
Hpy166II GTNNAC 3 cut(s) 528, 761, 1144
Hpy188I TCNGA 7 cut(s) 103, 534, 688, 805, 834, 984, 1239
Hpy188III TCNNGA 4 cut(s) 870, 959, 1051, 1069
Hpy8I GTNNAC 3 cut(s) 528, 761, 1144
Hpy99I CGWCG 2 cut(s) 834, 843
HpyAV CCTTC 3 cut(s) 319, 457, 956
HpyCH4III ACNGT 6 cut(s) 40, 457, 546, 788, 882, 923
HpyCH4IV ACGT 3 cut(s) 116, 268, 1121
HpyCH4V TGCA 9 cut(s) 51, 132, 235, 317, 557, 893, 1126, 1205, 1254
HpyF3I CTNAG 7 cut(s) 215, 447, 531, 687, 981, 1138, 1167
HpySE526I ACGT 3 cut(s) 116, 268, 1121
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 8 cut(s) 16, 51, 55, 491, 612, 929, 1054, 1098
HspAI GCGC 2 cut(s) 284, 498
KpnI GGTACC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 6 cut(s) 484, 742, 774, 790, 1063, 1113
LmnI GCTCC 1 cut(s) 1248
Lsp1109I GCAGC 4 cut(s) 394, 905, 1138, 1171
LweI GCATC 3 cut(s) 710, 980, 1180
MabI ACCWGGT 1 cut(s) 886
MaeI CTAG 2 cut(s) 870, 1226
MaeII ACGT 3 cut(s) 116, 268, 1121
MaeIII GTNAC 3 cut(s) 68, 83, 882
MalI GATC 6 cut(s) 486, 744, 776, 792, 1065, 1115
MboI GATC 6 cut(s) 484, 742, 774, 790, 1063, 1113
MboII GAAGA 9 cut(s) 40, 101, 472, 479, 482, 540, 597, 782, 1088
MluCI AATT 6 cut(s) 251, 473, 620, 643, 873, 1211
MluI ACGCGT 1 cut(s) 827
MlyI GAGTC 2 cut(s) 829, 1188
MmeI TCCRAC 2 cut(s) 812, 1134
Mph1103I ATGCAT 2 cut(s) 53, 134
MseI TTAA 2 cut(s) 519, 819
MslI CAYNNNNRTG 1 cut(s) 711
MspR9I CCNGG 2 cut(s) 364, 888
Mva1269I GAATGC 1 cut(s) 1256
MvaI CCWGG 2 cut(s) 364, 888
MvnI CGCG 1 cut(s) 829
NcoI CCATGG 1 cut(s) 608
NdeI CATATG 1 cut(s) 553
NdeII GATC 6 cut(s) 484, 742, 774, 790, 1063, 1113
NlaIII CATG 8 cut(s) 16, 51, 55, 491, 612, 929, 1054, 1098
NlaIV GGNNCC 2 cut(s) 199, 678
NmuCI GTSAC 2 cut(s) 68, 83
NsiI ATGCAT 2 cut(s) 53, 134
NspI RCATGY 2 cut(s) 51, 1098
PaeI GCATGC 1 cut(s) 51
PaeR7I CTCGAG 1 cut(s) 764
PagI TCATGA 1 cut(s) 1050
PasI CCCWGGG 1 cut(s) 363
PceI AGGCCT 1 cut(s) 220
PciI ACATGT 1 cut(s) 1094
PctI GAATGC 1 cut(s) 1256
PfeI GAWTC 3 cut(s) 614, 866, 985
PkrI GCNGC 4 cut(s) 409, 895, 1128, 1186
PleI GAGTC 2 cut(s) 829, 1187
PpsI GAGTC 2 cut(s) 829, 1187
PpuMI RGGWCCY 1 cut(s) 676
PscI ACATGT 1 cut(s) 1094
Psp1406I AACGTT 1 cut(s) 1121
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 2 cut(s) 362, 886
PspGI CCWGG 2 cut(s) 362, 886
PspN4I GGNNCC 2 cut(s) 199, 678
PspPI GGNCC 1 cut(s) 676
PspPPI RGGWCCY 1 cut(s) 676
PspXI VCTCGAGB 1 cut(s) 764
PstNI CAGNNNCTG 1 cut(s) 809
RsaI GTAC 3 cut(s) 199, 385, 1046
RsaNI GTAC 3 cut(s) 198, 384, 1045
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 2 cut(s) 519, 819
SatI GCNGC 4 cut(s) 408, 894, 1127, 1185
Sau3AI GATC 6 cut(s) 484, 742, 774, 790, 1063, 1113
Sau96I GGNCC 1 cut(s) 676
SchI GAGTC 2 cut(s) 829, 1188
ScrFI CCNGG 2 cut(s) 364, 888
SexAI ACCWGGT 1 cut(s) 886
SfaNI GCATC 3 cut(s) 710, 980, 1180
Sfr274I CTCGAG 1 cut(s) 764
SinI GGWCC 1 cut(s) 676
SlaI CTCGAG 1 cut(s) 764
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 4 cut(s) 241, 764, 1000, 1067
SmoI CTYRAG 4 cut(s) 241, 764, 1000, 1067
SphI GCATGC 1 cut(s) 51
Sse9I AATT 6 cut(s) 251, 473, 620, 643, 873, 1211
SseBI AGGCCT 1 cut(s) 220
SspI AATATT 1 cut(s) 1021
SspMI CTAG 2 cut(s) 870, 1226
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 2 cut(s) 362, 886
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 6 cut(s) 40, 457, 546, 788, 882, 923
TaiI ACGT 3 cut(s) 119, 271, 1124
TaqI TCGA 2 cut(s) 583, 765
TasI AATT 6 cut(s) 251, 473, 620, 643, 873, 1211
TfiI GAWTC 3 cut(s) 614, 866, 985
Tru1I TTAA 2 cut(s) 519, 819
Tru9I TTAA 2 cut(s) 519, 819
TscAI CASTG 4 cut(s) 210, 462, 885, 1116
TseFI GTSAC 2 cut(s) 68, 83
TseI GCWGC 4 cut(s) 407, 893, 1126, 1184
Tsp45I GTSAC 2 cut(s) 68, 83
TspDTI ATGAA 4 cut(s) 429, 540, 618, 1188
TspGWI ACGGA 2 cut(s) 71, 681
TspRI CASTG 4 cut(s) 210, 462, 885, 1116
VpaK11BI GGWCC 1 cut(s) 676
XagI CCTNNNNNAGG 1 cut(s) 905
XapI RAATTY 4 cut(s) 473, 643, 873, 1211
XbaI TCTAGA 1 cut(s) 869
XceI RCATGY 2 cut(s) 51, 1098
XhoI CTCGAG 1 cut(s) 764
XmiI GTMKAC 1 cut(s) 1143
XspI CTAG 2 cut(s) 870, 1226
Zsp2I ATGCAT 2 cut(s) 53, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.