protein binding ubiquitin-protein ligase zinc ion binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580 |
| fragaria_vesca | FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710 |
| malus_domestica | MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1 |
| prunus_persica | Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1 |
| pyrus_communis | pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160 |
| rosa_chinensis | RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351 |
| rosa_laevigata | RLG00000012310 RLG00000025707 |
| rosa_multiflora | Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00428390 Rroxscaffold_7G00179330 |
| rosa_rugosa | Rorug02G0629900 Rorug02G0630000 Rorug06G0202900 |
| rosa_samantha | Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200 |
| rosa_wichuraiana | Rw3G002380 Rw6G027130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 322 |
| Acc65I | GGTACC | 1 cut(s) | 197 |
| AccB1I | GGYRCC | 1 cut(s) | 197 |
| AccI | GTMKAC | 1 cut(s) | 1143 |
| AccII | CGCG | 1 cut(s) | 829 |
| AclI | AACGTT | 1 cut(s) | 1121 |
| AclWI | GGATC | 3 cut(s) | 750, 785, 1108 |
| AcsI | RAATTY | 4 cut(s) | 473, 643, 873, 1211 |
| AcuI | CTGAAG | 1 cut(s) | 309 |
| AcyI | GRCGYC | 1 cut(s) | 87 |
| AfaI | GTAC | 3 cut(s) | 199, 385, 1046 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 907, 1153 |
| AflIII | ACRYGT | 3 cut(s) | 114, 827, 1094 |
| AjnI | CCWGG | 2 cut(s) | 362, 886 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 459, 491 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1098, 1130 |
| AluBI | AGCT | 9 cut(s) | 168, 380, 407, 504, 691, 1060, 1129, 1137, 1243 |
| AluI | AGCT | 9 cut(s) | 168, 380, 407, 504, 691, 1060, 1129, 1137, 1243 |
| Alw26I | GTCTC | 1 cut(s) | 3 |
| AlwI | GGATC | 3 cut(s) | 750, 785, 1108 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 809 |
| Ama87I | CYCGRG | 2 cut(s) | 191, 764 |
| AoxI | GGCC | 1 cut(s) | 218 |
| ApeKI | GCWGC | 4 cut(s) | 407, 893, 1126, 1184 |
| ApoI | RAATTY | 4 cut(s) | 473, 643, 873, 1211 |
| Asp718I | GGTACC | 1 cut(s) | 197 |
| AspLEI | GCGC | 2 cut(s) | 286, 500 |
| AspS9I | GGNCC | 1 cut(s) | 676 |
| AsuHPI | GGTGA | 2 cut(s) | 800, 875 |
| AvaI | CYCGRG | 2 cut(s) | 191, 764 |
| AvaII | GGWCC | 1 cut(s) | 676 |
| BanI | GGYRCC | 1 cut(s) | 197 |
| BbsI | GAAGAC | 2 cut(s) | 101, 540 |
| BbvI | GCAGC | 4 cut(s) | 394, 905, 1138, 1171 |
| BccI | CCATC | 2 cut(s) | 311, 1007 |
| BciT130I | CCWGG | 2 cut(s) | 364, 888 |
| BclI | TGATCA | 1 cut(s) | 484 |
| BcoDI | GTCTC | 1 cut(s) | 3 |
| BfaI | CTAG | 2 cut(s) | 870, 1226 |
| BfoI | RGCGCY | 1 cut(s) | 287 |
| BfuAI | ACCTGC | 1 cut(s) | 322 |
| BisI | GCNGC | 4 cut(s) | 408, 894, 1127, 1185 |
| BlsI | GCNGC | 4 cut(s) | 409, 895, 1128, 1186 |
| Bme1390I | CCNGG | 2 cut(s) | 364, 888 |
| Bme18I | GGWCC | 1 cut(s) | 676 |
| BmeT110I | CYCGRG | 2 cut(s) | 191, 764 |
| BmgT120I | GGNCC | 1 cut(s) | 676 |
| BmiI | GGNNCC | 2 cut(s) | 199, 678 |
| BmrFI | CCNGG | 2 cut(s) | 364, 888 |
| BmsI | GCATC | 3 cut(s) | 710, 980, 1180 |
| BpiI | GAAGAC | 2 cut(s) | 101, 540 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 3 cut(s) | 262, 1021, 1052 |
| BsaHI | GRCGYC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 4 cut(s) | 190, 362, 363, 608 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 30, 907, 937, 1095, 1125 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 907, 1153 |
| Bse1I | ACTGG | 5 cut(s) | 173, 210, 568, 1025, 1109 |
| Bse3DI | GCAATG | 1 cut(s) | 974 |
| BseBI | CCWGG | 2 cut(s) | 364, 888 |
| BseDI | CCNNGG | 4 cut(s) | 190, 362, 363, 608 |
| BseGI | GGATG | 5 cut(s) | 160, 601, 661, 701, 1018 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 907, 1153 |
| BseMI | GCAATG | 1 cut(s) | 974 |
| BseMII | CTCAG | 3 cut(s) | 545, 678, 995 |
| BseNI | ACTGG | 5 cut(s) | 173, 210, 568, 1025, 1109 |
| BseRI | GAGGAG | 2 cut(s) | 68, 928 |
| BseXI | GCAGC | 4 cut(s) | 394, 905, 1138, 1171 |
| BsgI | GTGCAG | 1 cut(s) | 912 |
| Bsh1236I | CGCG | 1 cut(s) | 829 |
| BshFI | GGCC | 1 cut(s) | 220 |
| BshNI | GGYRCC | 1 cut(s) | 197 |
| BsiHKCI | CYCGRG | 2 cut(s) | 191, 764 |
| BslFI | GGGAC | 1 cut(s) | 556 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 907, 1153 |
| BsmAI | GTCTC | 1 cut(s) | 3 |
| BsmFI | GGGAC | 1 cut(s) | 556 |
| BsmI | GAATGC | 1 cut(s) | 1256 |
| BsnI | GGCC | 1 cut(s) | 220 |
| BsoBI | CYCGRG | 2 cut(s) | 191, 764 |
| Bsp143I | GATC | 6 cut(s) | 484, 742, 774, 790, 1063, 1113 |
| Bsp19I | CCATGG | 1 cut(s) | 608 |
| BspANI | GGCC | 1 cut(s) | 220 |
| BspCNI | CTCAG | 3 cut(s) | 544, 679, 994 |
| BspFNI | CGCG | 1 cut(s) | 829 |
| BspHI | TCATGA | 1 cut(s) | 1050 |
| BspLI | GGNNCC | 2 cut(s) | 199, 678 |
| BspMI | ACCTGC | 1 cut(s) | 322 |
| BspPI | GGATC | 3 cut(s) | 750, 785, 1108 |
| BspT107I | GGYRCC | 1 cut(s) | 197 |
| BsrDI | GCAATG | 1 cut(s) | 974 |
| BsrI | ACTGG | 5 cut(s) | 173, 210, 568, 1025, 1109 |
| BssECI | CCNNGG | 4 cut(s) | 190, 362, 363, 608 |
| BssMI | GATC | 6 cut(s) | 484, 742, 774, 790, 1063, 1113 |
| BssNI | GRCGYC | 1 cut(s) | 87 |
| BssT1I | CCWWGG | 1 cut(s) | 608 |
| Bst2UI | CCWGG | 2 cut(s) | 364, 888 |
| Bst4CI | ACNGT | 6 cut(s) | 40, 457, 546, 788, 882, 923 |
| Bst6I | CTCTTC | 2 cut(s) | 23, 765 |
| BstACI | GRCGYC | 1 cut(s) | 87 |
| BstC8I | GCNNGC | 4 cut(s) | 49, 502, 506, 898 |
| BstDEI | CTNAG | 7 cut(s) | 215, 447, 531, 687, 981, 1138, 1167 |
| BstDSI | CCRYGG | 1 cut(s) | 608 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 905 |
| BstF5I | GGATG | 5 cut(s) | 160, 601, 661, 701, 1018 |
| BstFNI | CGCG | 1 cut(s) | 829 |
| BstH2I | RGCGCY | 1 cut(s) | 287 |
| BstHHI | GCGC | 2 cut(s) | 286, 500 |
| BstKTI | GATC | 6 cut(s) | 487, 745, 777, 793, 1066, 1116 |
| BstMAI | GTCTC | 1 cut(s) | 3 |
| BstMBI | GATC | 6 cut(s) | 484, 742, 774, 790, 1063, 1113 |
| BstNI | CCWGG | 2 cut(s) | 364, 888 |
| BstNSI | RCATGY | 2 cut(s) | 51, 1098 |
| BstSCI | CCNGG | 2 cut(s) | 362, 886 |
| BstUI | CGCG | 1 cut(s) | 829 |
| BstV1I | GCAGC | 4 cut(s) | 394, 905, 1138, 1171 |
| BstV2I | GAAGAC | 2 cut(s) | 101, 540 |
| BsuRI | GGCC | 1 cut(s) | 220 |
| BtgI | CCRYGG | 1 cut(s) | 608 |
| BtsCI | GGATG | 5 cut(s) | 160, 601, 661, 701, 1018 |
| BtsIMutI | CAGTG | 4 cut(s) | 203, 462, 878, 1116 |
| BveI | ACCTGC | 1 cut(s) | 322 |
| Cac8I | GCNNGC | 4 cut(s) | 49, 502, 506, 898 |
| CaiI | CAGNNNCTG | 1 cut(s) | 809 |
| CciI | TCATGA | 1 cut(s) | 1050 |
| CfoI | GCGC | 2 cut(s) | 286, 500 |
| Cfr13I | GGNCC | 1 cut(s) | 676 |
| CseI | GACGC | 4 cut(s) | 95, 818, 936, 1176 |
| CsiI | ACCWGGT | 1 cut(s) | 886 |
| Csp6I | GTAC | 3 cut(s) | 198, 384, 1045 |
| CviAII | CATG | 8 cut(s) | 13, 48, 52, 488, 609, 926, 1051, 1095 |
| CviQI | GTAC | 3 cut(s) | 198, 384, 1045 |
| DdeI | CTNAG | 7 cut(s) | 215, 447, 531, 687, 981, 1138, 1167 |
| DpnI | GATC | 6 cut(s) | 486, 744, 776, 792, 1065, 1115 |
| DpnII | GATC | 6 cut(s) | 484, 742, 774, 790, 1063, 1113 |
| Eam1104I | CTCTTC | 2 cut(s) | 23, 765 |
| EarI | CTCTTC | 2 cut(s) | 23, 765 |
| Eco130I | CCWWGG | 1 cut(s) | 608 |
| Eco147I | AGGCCT | 1 cut(s) | 220 |
| Eco47I | GGWCC | 1 cut(s) | 676 |
| Eco57I | CTGAAG | 1 cut(s) | 309 |
| Eco88I | CYCGRG | 2 cut(s) | 191, 764 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 905 |
| EcoO109I | RGGNCCY | 1 cut(s) | 676 |
| EcoRI | GAATTC | 1 cut(s) | 873 |
| EcoRII | CCWGG | 2 cut(s) | 362, 886 |
| EcoT14I | CCWWGG | 1 cut(s) | 608 |
| EcoT22I | ATGCAT | 2 cut(s) | 53, 134 |
| ErhI | CCWWGG | 1 cut(s) | 608 |
| FaeI | CATG | 8 cut(s) | 16, 51, 55, 491, 612, 929, 1054, 1098 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 532, 564 |
| FaqI | GGGAC | 1 cut(s) | 556 |
| FatI | CATG | 8 cut(s) | 12, 47, 51, 487, 608, 925, 1050, 1094 |
| FauNDI | CATATG | 1 cut(s) | 553 |
| FbaI | TGATCA | 1 cut(s) | 484 |
| FblI | GTMKAC | 1 cut(s) | 1143 |
| Fnu4HI | GCNGC | 4 cut(s) | 408, 894, 1127, 1185 |
| FokI | GGATG | 5 cut(s) | 167, 608, 668, 688, 1025 |
| Fsp4HI | GCNGC | 4 cut(s) | 408, 894, 1127, 1185 |
| FspBI | CTAG | 2 cut(s) | 870, 1226 |
| GlaI | GCGC | 2 cut(s) | 285, 499 |
| GluI | GCNGC | 4 cut(s) | 408, 894, 1127, 1185 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 287 |
| HaeIII | GGCC | 1 cut(s) | 220 |
| HgaI | GACGC | 4 cut(s) | 95, 818, 936, 1176 |
| HhaI | GCGC | 2 cut(s) | 286, 500 |
| Hin1I | GRCGYC | 1 cut(s) | 87 |
| Hin1II | CATG | 8 cut(s) | 16, 51, 55, 491, 612, 929, 1054, 1098 |
| Hin6I | GCGC | 2 cut(s) | 284, 498 |
| HinP1I | GCGC | 2 cut(s) | 284, 498 |
| HindIII | AAGCTT | 1 cut(s) | 1058 |
| HinfI | GANTC | 5 cut(s) | 614, 835, 866, 985, 1179 |
| HphI | GGTGA | 2 cut(s) | 800, 875 |
| Hpy166II | GTNNAC | 3 cut(s) | 528, 761, 1144 |
| Hpy188I | TCNGA | 7 cut(s) | 103, 534, 688, 805, 834, 984, 1239 |
| Hpy188III | TCNNGA | 4 cut(s) | 870, 959, 1051, 1069 |
| Hpy8I | GTNNAC | 3 cut(s) | 528, 761, 1144 |
| Hpy99I | CGWCG | 2 cut(s) | 834, 843 |
| HpyAV | CCTTC | 3 cut(s) | 319, 457, 956 |
| HpyCH4III | ACNGT | 6 cut(s) | 40, 457, 546, 788, 882, 923 |
| HpyCH4IV | ACGT | 3 cut(s) | 116, 268, 1121 |
| HpyCH4V | TGCA | 9 cut(s) | 51, 132, 235, 317, 557, 893, 1126, 1205, 1254 |
| HpyF3I | CTNAG | 7 cut(s) | 215, 447, 531, 687, 981, 1138, 1167 |
| HpySE526I | ACGT | 3 cut(s) | 116, 268, 1121 |
| Hsp92I | GRCGYC | 1 cut(s) | 87 |
| Hsp92II | CATG | 8 cut(s) | 16, 51, 55, 491, 612, 929, 1054, 1098 |
| HspAI | GCGC | 2 cut(s) | 284, 498 |
| KpnI | GGTACC | 1 cut(s) | 201 |
| Ksp22I | TGATCA | 1 cut(s) | 484 |
| Kzo9I | GATC | 6 cut(s) | 484, 742, 774, 790, 1063, 1113 |
| LmnI | GCTCC | 1 cut(s) | 1248 |
| Lsp1109I | GCAGC | 4 cut(s) | 394, 905, 1138, 1171 |
| LweI | GCATC | 3 cut(s) | 710, 980, 1180 |
| MabI | ACCWGGT | 1 cut(s) | 886 |
| MaeI | CTAG | 2 cut(s) | 870, 1226 |
| MaeII | ACGT | 3 cut(s) | 116, 268, 1121 |
| MaeIII | GTNAC | 3 cut(s) | 68, 83, 882 |
| MalI | GATC | 6 cut(s) | 486, 744, 776, 792, 1065, 1115 |
| MboI | GATC | 6 cut(s) | 484, 742, 774, 790, 1063, 1113 |
| MboII | GAAGA | 9 cut(s) | 40, 101, 472, 479, 482, 540, 597, 782, 1088 |
| MluCI | AATT | 6 cut(s) | 251, 473, 620, 643, 873, 1211 |
| MluI | ACGCGT | 1 cut(s) | 827 |
| MlyI | GAGTC | 2 cut(s) | 829, 1188 |
| MmeI | TCCRAC | 2 cut(s) | 812, 1134 |
| Mph1103I | ATGCAT | 2 cut(s) | 53, 134 |
| MseI | TTAA | 2 cut(s) | 519, 819 |
| MslI | CAYNNNNRTG | 1 cut(s) | 711 |
| MspR9I | CCNGG | 2 cut(s) | 364, 888 |
| Mva1269I | GAATGC | 1 cut(s) | 1256 |
| MvaI | CCWGG | 2 cut(s) | 364, 888 |
| MvnI | CGCG | 1 cut(s) | 829 |
| NcoI | CCATGG | 1 cut(s) | 608 |
| NdeI | CATATG | 1 cut(s) | 553 |
| NdeII | GATC | 6 cut(s) | 484, 742, 774, 790, 1063, 1113 |
| NlaIII | CATG | 8 cut(s) | 16, 51, 55, 491, 612, 929, 1054, 1098 |
| NlaIV | GGNNCC | 2 cut(s) | 199, 678 |
| NmuCI | GTSAC | 2 cut(s) | 68, 83 |
| NsiI | ATGCAT | 2 cut(s) | 53, 134 |
| NspI | RCATGY | 2 cut(s) | 51, 1098 |
| PaeI | GCATGC | 1 cut(s) | 51 |
| PaeR7I | CTCGAG | 1 cut(s) | 764 |
| PagI | TCATGA | 1 cut(s) | 1050 |
| PasI | CCCWGGG | 1 cut(s) | 363 |
| PceI | AGGCCT | 1 cut(s) | 220 |
| PciI | ACATGT | 1 cut(s) | 1094 |
| PctI | GAATGC | 1 cut(s) | 1256 |
| PfeI | GAWTC | 3 cut(s) | 614, 866, 985 |
| PkrI | GCNGC | 4 cut(s) | 409, 895, 1128, 1186 |
| PleI | GAGTC | 2 cut(s) | 829, 1187 |
| PpsI | GAGTC | 2 cut(s) | 829, 1187 |
| PpuMI | RGGWCCY | 1 cut(s) | 676 |
| PscI | ACATGT | 1 cut(s) | 1094 |
| Psp1406I | AACGTT | 1 cut(s) | 1121 |
| Psp5II | RGGWCCY | 1 cut(s) | 676 |
| Psp6I | CCWGG | 2 cut(s) | 362, 886 |
| PspGI | CCWGG | 2 cut(s) | 362, 886 |
| PspN4I | GGNNCC | 2 cut(s) | 199, 678 |
| PspPI | GGNCC | 1 cut(s) | 676 |
| PspPPI | RGGWCCY | 1 cut(s) | 676 |
| PspXI | VCTCGAGB | 1 cut(s) | 764 |
| PstNI | CAGNNNCTG | 1 cut(s) | 809 |
| RsaI | GTAC | 3 cut(s) | 199, 385, 1046 |
| RsaNI | GTAC | 3 cut(s) | 198, 384, 1045 |
| RseI | CAYNNNNRTG | 1 cut(s) | 711 |
| SaqAI | TTAA | 2 cut(s) | 519, 819 |
| SatI | GCNGC | 4 cut(s) | 408, 894, 1127, 1185 |
| Sau3AI | GATC | 6 cut(s) | 484, 742, 774, 790, 1063, 1113 |
| Sau96I | GGNCC | 1 cut(s) | 676 |
| SchI | GAGTC | 2 cut(s) | 829, 1188 |
| ScrFI | CCNGG | 2 cut(s) | 364, 888 |
| SexAI | ACCWGGT | 1 cut(s) | 886 |
| SfaNI | GCATC | 3 cut(s) | 710, 980, 1180 |
| Sfr274I | CTCGAG | 1 cut(s) | 764 |
| SinI | GGWCC | 1 cut(s) | 676 |
| SlaI | CTCGAG | 1 cut(s) | 764 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 711 |
| SmlI | CTYRAG | 4 cut(s) | 241, 764, 1000, 1067 |
| SmoI | CTYRAG | 4 cut(s) | 241, 764, 1000, 1067 |
| SphI | GCATGC | 1 cut(s) | 51 |
| Sse9I | AATT | 6 cut(s) | 251, 473, 620, 643, 873, 1211 |
| SseBI | AGGCCT | 1 cut(s) | 220 |
| SspI | AATATT | 1 cut(s) | 1021 |
| SspMI | CTAG | 2 cut(s) | 870, 1226 |
| StuI | AGGCCT | 1 cut(s) | 220 |
| StyD4I | CCNGG | 2 cut(s) | 362, 886 |
| StyI | CCWWGG | 1 cut(s) | 608 |
| TaaI | ACNGT | 6 cut(s) | 40, 457, 546, 788, 882, 923 |
| TaiI | ACGT | 3 cut(s) | 119, 271, 1124 |
| TaqI | TCGA | 2 cut(s) | 583, 765 |
| TasI | AATT | 6 cut(s) | 251, 473, 620, 643, 873, 1211 |
| TfiI | GAWTC | 3 cut(s) | 614, 866, 985 |
| Tru1I | TTAA | 2 cut(s) | 519, 819 |
| Tru9I | TTAA | 2 cut(s) | 519, 819 |
| TscAI | CASTG | 4 cut(s) | 210, 462, 885, 1116 |
| TseFI | GTSAC | 2 cut(s) | 68, 83 |
| TseI | GCWGC | 4 cut(s) | 407, 893, 1126, 1184 |
| Tsp45I | GTSAC | 2 cut(s) | 68, 83 |
| TspDTI | ATGAA | 4 cut(s) | 429, 540, 618, 1188 |
| TspGWI | ACGGA | 2 cut(s) | 71, 681 |
| TspRI | CASTG | 4 cut(s) | 210, 462, 885, 1116 |
| VpaK11BI | GGWCC | 1 cut(s) | 676 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 905 |
| XapI | RAATTY | 4 cut(s) | 473, 643, 873, 1211 |
| XbaI | TCTAGA | 1 cut(s) | 869 |
| XceI | RCATGY | 2 cut(s) | 51, 1098 |
| XhoI | CTCGAG | 1 cut(s) | 764 |
| XmiI | GTMKAC | 1 cut(s) | 1143 |
| XspI | CTAG | 2 cut(s) | 870, 1226 |
| Zsp2I | ATGCAT | 2 cut(s) | 53, 134 |